Structural variants in genes associated with human Williams-Beuren syndrome underlie stereotypical hypersociability in domestic dogs
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Clive D. L. Wynne | Elaine A. Ostrander | Janet S. Sinsheimer | Bridgett M. vonHoldt | J. Sinsheimer | E. Ostrander | C. Wynne | D. Stahler | A. Hogan | B. vonHoldt | Emily Shuldiner | Ilana J Koch | Rebecca Y. Kartzinel | Lauren Brubaker | Shelby Wanser | M. Udell | Emily Shuldiner | Monique A. R. Udell | Ilana Janowitz Koch | Andrew Hogan | Lauren Brubaker | Shelby Wanser | Daniel Stahler | Ilana J. Koch | Emily G. Shuldiner | B. Vonholdt | S. Wanser
[1] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[2] Á. Miklósi,et al. Oxytocin Receptor Gene Polymorphisms Are Associated with Human Directed Social Behavior in Dogs (Canis familiaris) , 2014, PloS one.
[3] Pardis C Sabeti,et al. Genome-wide detection and characterization of positive selection in human populations , 2007, Nature.
[4] Jing Wang,et al. WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013 , 2013, Nucleic Acids Res..
[5] Andreas Meyer-Lindenberg,et al. Neural mechanisms in Williams syndrome: a unique window to genetic influences on cognition and behaviour , 2006, Nature Reviews Neuroscience.
[6] Tom H. Pringle,et al. The human genome browser at UCSC. , 2002, Genome research.
[7] R. Adolphs,et al. II. Hypersociability in Williams Syndrome , 2000, Journal of Cognitive Neuroscience.
[8] Philip Lijnzaad,et al. The Ensembl genome database project , 2002, Nucleic Acids Res..
[9] J. Serpell,et al. Effects of breed, sex, and neuter status on trainability in dogs , 2005 .
[10] M. McHugh. Interrater reliability: the kappa statistic , 2012, Biochemia medica.
[11] Daniel Rios,et al. Bioinformatics Applications Note Databases and Ontologies Deriving the Consequences of Genomic Variants with the Ensembl Api and Snp Effect Predictor , 2022 .
[12] C. Wynne,et al. The performance of stray dogs (Canis familiaris) living in a shelter on human-guided object-choice tasks , 2010, Animal Behaviour.
[13] M. Bayés,et al. Mutational mechanisms of Williams-Beuren syndrome deletions. , 2003, American journal of human genetics.
[14] M. Johnsson,et al. Human‐directed social behaviour in dogs shows significant heritability , 2015, Genes, brain, and behavior.
[15] K. Svartberg,et al. Breed-typical behaviour in dogs—Historical remnants or recent constructs? , 2006 .
[16] Bing Zhang,et al. WebGestalt: an integrated system for exploring gene sets in various biological contexts , 2005, Nucleic Acids Res..
[17] H. Frank,et al. ON THE EFFECTS OF DOMESTICATION ON CANINE SOCIAL DEVELOPMENT AND BEHAVIOR , 1982 .
[18] Peter Kraft,et al. Maximizing the power of principal-component analysis of correlated phenotypes in genome-wide association studies. , 2014, American journal of human genetics.
[19] K. Lindblad-Toh,et al. The genomic signature of dog domestication reveals adaptation to a starch-rich diet , 2013, Nature.
[20] R. Wilson,et al. BreakDancer: An algorithm for high resolution mapping of genomic structural variation , 2009, Nature Methods.
[21] E. H. Margulies,et al. An Expressed Fgf4 Retrogene Is Associated with Breed-Defining Chondrodysplasia in Domestic Dogs , 2009, Science.
[22] M. Digilio,et al. Smaller and larger deletions of the Williams Beuren syndrome region implicate genes involved in mild facial phenotype, epilepsy and autistic traits , 2013, European Journal of Human Genetics.
[23] O. Delaneau,et al. A linear complexity phasing method for thousands of genomes , 2011, Nature Methods.
[24] A. Magi,et al. Detection of Genomic Structural Variants from Next-Generation Sequencing Data , 2015, Front. Bioeng. Biotechnol..
[25] J. Buxbaum,et al. Haploinsufficiency of Gtf2i, a gene deleted in Williams Syndrome, leads to increases in social interactions , 2011, Autism research : official journal of the International Society for Autism Research.
[26] L. Rieseberg,et al. Association Mapping and the Genomic Consequences of Selection in Sunflower , 2013, PLoS genetics.
[27] Lisa J. Martin,et al. The effect of minor allele frequency on the likelihood of obtaining false positives , 2009, BMC Proceedings.
[28] Á. Miklósi,et al. Comparative social cognition: what can dogs teach us? , 2004, Animal Behaviour.
[29] C. Wynne,et al. Wolves outperform dogs in following human social cues , 2008, Animal Behaviour.
[30] J. Serpell,et al. Dog Breeds and Their Behavior , 2014 .
[31] Natalie,et al. Genetic Structure of the Purebred Domestic Dog , 2004 .
[32] P. Schofield,et al. A Role for Transcription Factor GTF2IRD2 in Executive Function in Williams-Beuren Syndrome , 2012, PloS one.
[33] E. Ostrander,et al. Single-Nucleotide-Polymorphism-Based Association Mapping of Dog Stereotypes , 2008, Genetics.
[34] F. Ruddle,et al. Identification of the TFII-I family target genes in the vertebrate genome , 2008, Proceedings of the National Academy of Sciences.
[35] J. Serpell,et al. Breed differences in canine aggression , 2008 .
[36] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[37] Thomas M. Keane,et al. Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly , 2010, Genome Biology.
[38] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[39] B. Faircloth,et al. Primer3—new capabilities and interfaces , 2012, Nucleic acids research.
[40] Emmanuel Mignot,et al. The Sleep Disorder Canine Narcolepsy Is Caused by a Mutation in the Hypocretin (Orexin) Receptor 2 Gene , 1999, Cell.
[41] Eden R Martin,et al. A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms , 2008, Genetic epidemiology.
[42] Peter Hammond,et al. GTF2IRD1 in Craniofacial Development of Humans and Mice , 2005, Science.
[43] Edward J Hollox,et al. The challenges of studying complex and dynamic regions of the human genome. , 2012, Methods in molecular biology.
[44] Anders Albrechtsen,et al. ANGSD: Analysis of Next Generation Sequencing Data , 2014, BMC Bioinformatics.
[45] K. Lindblad-Toh,et al. Identification of Genomic Regions Associated with Phenotypic Variation between Dog Breeds using Selection Mapping , 2011, PLoS genetics.
[46] Charlotte N. Henrichsen,et al. Side effects of genome structural changes. , 2007, Current opinion in genetics & development.
[47] Alessandro Vullo,et al. Ensembl 2015 , 2014, Nucleic Acids Res..
[48] C. Wynne,et al. What did domestication do to dogs? A new account of dogs' sensitivity to human actions , 2010, Biological reviews of the Cambridge Philosophical Society.
[49] L. Trut,et al. Animal evolution during domestication: the domesticated fox as a model , 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.
[50] Miss A.O. Penney. (b) , 1974, The New Yale Book of Quotations.
[51] L. Kruglyak,et al. Genetic Structure of the Purebred Domestic Dog , 2004, Science.
[52] Ursula Bellugi,et al. “Everybody in the world is my friend” hypersociability in young children with Williams syndrome , 2004, American journal of medical genetics. Part A.
[53] C. Schubert. The genomic basis of the Williams – Beuren syndrome , 2008, Cellular and Molecular Life Sciences.
[54] Charlotte N. Henrichsen,et al. Submicroscopic deletion in patients with Williams-Beuren syndrome influences expression levels of the nonhemizygous flanking genes. , 2006, American journal of human genetics.
[55] Rebecca J. Oakey,et al. Transposable Elements Re-Wire and Fine-Tune the Transcriptome , 2013, PLoS genetics.
[56] Kai Ye,et al. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads , 2009, Bioinform..
[57] Rumiko Matsuoka,et al. VI. Genome Structure and Cognitive Map of Williams Syndrome , 2000, Journal of Cognitive Neuroscience.
[58] Karl Deisseroth,et al. Induced chromosome deletions cause hypersociability and other features of Williams–Beuren syndrome in mice , 2009, EMBO molecular medicine.
[59] Roser Corominas,et al. Copy number variation at the 7q11.23 segmental duplications is a susceptibility factor for the Williams-Beuren syndrome deletion. , 2008, Genome research.
[60] A. Singleton,et al. Rare Structural Variants Disrupt Multiple Genes in Neurodevelopmental Pathways in Schizophrenia , 2008, Science.
[61] F. Ruddle,et al. Isolation and characterization of BEN, a member of the TFII-I family of DNA-binding proteins containing distinct helix-loop-helix domains. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[62] A. Boyko. The domestic dog: man's best friend in the genomic era , 2011, Genome Biology.
[63] Xiang Gao,et al. Generation of gene-target dogs using CRISPR/Cas9 system. , 2015, Journal of molecular cell biology.
[64] M. Tassabehji,et al. Isolation and characterisation of GTF2IRD2, a novel fusion gene and member of the TFII-I family of transcription factors, deleted in Williams–Beuren syndrome , 2004, European Journal of Human Genetics.
[65] H. Frank,et al. Evolution of canine information processing under conditions of natural and artificial selection. , 1980, Zeitschrift fur Tierpsychologie.
[66] M. Stephens,et al. Genome-wide Efficient Mixed Model Analysis for Association Studies , 2012, Nature Genetics.
[67] J. Dennis,et al. Genome‐scale identification of UDP‐GlcNAc‐dependent pathways , 2008, Proteomics.
[68] E. Klinghammer,et al. Socialization and management of wolves in captivity. , 1987 .
[69] Jeremiah D. Degenhardt,et al. Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication , 2010, Nature.
[70] J. Sinsheimer,et al. The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves , 2016, Molecular ecology.
[71] Michael Tomasello,et al. Human-like social skills in dogs? , 2005, Trends in Cognitive Sciences.
[72] M. Udell. When dogs look back: inhibition of independent problem-solving behaviour in domestic dogs (Canis lupus familiaris) compared with wolves (Canis lupus) , 2015, Biology Letters.
[73] B. Crespi,et al. The Williams syndrome prosociality gene GTF2I mediates oxytocin reactivity and social anxiety in a healthy population , 2017, Biology Letters.
[74] H. Frank. Man and wolf : advances, issues, and problems in captive wolf research , 1987 .
[75] E. Kirkness,et al. Short interspersed elements (SINEs) are a major source of canine genomic diversity. , 2005, Genome research.
[76] S. Blot,et al. SINE exonic insertion in the PTPLA gene leads to multiple splicing defects and segregates with the autosomal recessive centronuclear myopathy in dogs. , 2005, Human molecular genetics.
[77] Angel M. Elgier,et al. Sociability and gazing toward humans in dogs and wolves: Simple behaviors with broad implications. , 2016, Journal of the experimental analysis of behavior.
[78] Gad Abraham,et al. Fast Principal Component Analysis of Large-Scale Genome-Wide Data , 2014, bioRxiv.
[79] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[80] C. Bustamante,et al. A Single IGF1 Allele Is a Major Determinant of Small Size in Dogs , 2007, Science.
[81] Uta Francke,et al. An atypical deletion of the Williams–Beuren syndrome interval implicates genes associated with defective visuospatial processing and autism , 2006, Journal of Medical Genetics.
[82] C. Bustamante,et al. Molecular and Evolutionary History of Melanism in North American Gray Wolves , 2009, Science.
[83] Raymond M. Moore,et al. SoftSearch: Integration of Multiple Sequence Features to Identify Breakpoints of Structural Variations , 2013, PloS one.
[84] Manuel A. R. Ferreira,et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.
[85] J. Trent,et al. Comparison against 186 canid whole-genome sequences reveals survival strategies of an ancient clonally transmissible canine tumor , 2015, Genome research.
[86] 장윤희,et al. Y. , 2003, Industrial and Labor Relations Terms.
[87] Á. Miklósi,et al. Trainability and boldness traits differ between dog breed clusters based on conventional breed categories and genetic relatedness , 2011 .
[88] A. Mustaca,et al. Do more sociable dogs gaze longer to the human face than less sociable ones? , 2012, Behavioural Processes.
[89] P. Fletcher,et al. Reduced fear and aggression and altered serotonin metabolism in Gtf2ird1‐targeted mice , 2008, Genes, brain, and behavior.
[90] M. Nagasawa,et al. Oxytocin-gaze positive loop and the coevolution of human-dog bonds , 2015, Science.
[91] Ira M. Hall,et al. Characterizing complex structural variation in germline and somatic genomes. , 2012, Trends in genetics : TIG.
[92] Fangqing Zhao,et al. inGAP-sv: a novel scheme to identify and visualize structural variation from paired end mapping data , 2011, Nucleic Acids Res..
[93] Gorjan Alagic,et al. #p , 2019, Quantum information & computation.
[94] Á. Miklósi,et al. DRD4 and TH gene polymorphisms are associated with activity, impulsivity and inattention in Siberian Husky dogs. , 2013, Animal genetics.
[95] G. Merla,et al. Molecular Genetics of Williams–Beuren Syndrome , 2012 .
[96] Kerstin Lindblad-Toh,et al. Leader of the pack: gene mapping in dogs and other model organisms , 2008, Nature Reviews Genetics.
[97] Patricia Spallone,et al. Hemizygosity at the elastin locus in a developmental disorder, Williams syndrome , 1993, Nature Genetics.
[98] K. Murphy,et al. Retrotransposon insertion in SILV is responsible for merle patterning of the domestic dog , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[99] Lauren Brubaker,et al. Differences in problem-solving between canid populations: Do domestication and lifetime experience affect persistence? , 2017, Animal Cognition.
[100] P. Bennett,et al. A refinement and validation of the Monash Canine Personality Questionnaire (MCPQ) , 2009 .
[101] Hans-Peter Piepho,et al. Comparison of Mixed-Model Approaches for Association Mapping , 2008, Genetics.