The gut microbiota promotes hepatic fatty acid desaturation and elongation in mice

[1]  Pascal G. P. Martin,et al.  Dietary oleic acid regulates hepatic lipogenesis through a liver X receptor-dependent signaling , 2017, PloS one.

[2]  J. Blanchard,et al.  Kineothrix alysoides, gen. nov., sp. nov., a saccharolytic butyrate-producer within the family Lachnospiraceae. , 2017, International journal of systematic and evolutionary microbiology.

[3]  Sandra Fischer,et al.  Distributed under Creative Commons Cc-by 4.0 Rhea: a Transparent and Modular R Pipeline for Microbial Profiling Based on 16s Rrna Gene Amplicons , 2022 .

[4]  Christer S. Ejsing,et al.  Homeoviscous Adaptation and the Regulation of Membrane Lipids. , 2016, Journal of molecular biology.

[5]  Philipp C. Münch,et al.  Genome-guided design of a defined mouse microbiota that 1 confers colonization resistance against Salmonella enterica 2 serovar Typhimurium 3 , 2018 .

[6]  M. Horn,et al.  IMNGS: A comprehensive open resource of processed 16S rRNA microbial profiles for ecology and diversity studies , 2016, Scientific Reports.

[7]  Tony Brooks,et al.  Accurate Sample Assignment in a Multiplexed, Ultrasensitive, High-Throughput Sequencing Assay for Minimal Residual Disease. , 2016, The Journal of molecular diagnostics : JMD.

[8]  J. Ntambi,et al.  Microbiota-Dependent Hepatic Lipogenesis Mediated by Stearoyl CoA Desaturase 1 (SCD1) Promotes Metabolic Syndrome in TLR5-Deficient Mice. , 2015, Cell metabolism.

[9]  Liangyi Chen,et al.  Faculty Opinions recommendation of Lipid cell biology. Polyunsaturated phospholipids facilitate membrane deformation and fission by endocytic proteins. , 2015 .

[10]  B. Kuster,et al.  Evaluation of Kinase Activity Profiling Using Chemical Proteomics. , 2015, ACS chemical biology.

[11]  Jens Nielsen,et al.  The gut microbiota modulates host amino acid and glutathione metabolism in mice , 2015 .

[12]  M. Blaut,et al.  Effects of dietary inulin on bacterial growth, short-chain fatty acid production and hepatic lipid metabolism in gnotobiotic mice. , 2015, The Journal of nutritional biochemistry.

[13]  D. Haller,et al.  Gut metabolites and bacterial community networks during a pilot intervention study with flaxseeds in healthy adult men. , 2015, Molecular nutrition & food research.

[14]  Matthew E. Ritchie,et al.  limma powers differential expression analyses for RNA-sequencing and microarray studies , 2015, Nucleic acids research.

[15]  C. Borchers,et al.  An isotope-labeled chemical derivatization method for the quantitation of short-chain fatty acids in human feces by liquid chromatography-tandem mass spectrometry. , 2015, Analytica chimica acta.

[16]  Justine W. Debelius,et al.  Specialized metabolites from the microbiome in health and disease. , 2014, Cell metabolism.

[17]  S. Vanni,et al.  Polyunsaturated phospholipids facilitate membrane deformation and fission by endocytic proteins , 2014, Science.

[18]  C. Manichanh,et al.  Short-Term Effect of Antibiotics on Human Gut Microbiota , 2014, PloS one.

[19]  G. Liebisch,et al.  Application of stable isotopes to investigate the metabolism of fatty acids, glycerophospholipid and sphingolipid species. , 2014, Progress in lipid research.

[20]  D. Gilroy,et al.  Proresolving lipid mediators and mechanisms in the resolution of acute inflammation. , 2014, Immunity.

[21]  Barbara M. Bakker,et al.  The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism , 2013, Journal of Lipid Research.

[22]  Robert C. Edgar,et al.  UPARSE: highly accurate OTU sequences from microbial amplicon reads , 2013, Nature Methods.

[23]  Sarah L. Westcott,et al.  Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform , 2013, Applied and Environmental Microbiology.

[24]  G. Tsujimoto,et al.  The gut microbiota suppresses insulin-mediated fat accumulation via the short-chain fatty acid receptor GPR43 , 2013, Nature Communications.

[25]  Juan Antonio Vizcaíno,et al.  Shorthand notation for lipid structures derived from mass spectrometry , 2013, Journal of Lipid Research.

[26]  Lee M. Kaplan,et al.  Conserved Shifts in the Gut Microbiota Due to Gastric Bypass Reduce Host Weight and Adiposity , 2013, Science Translational Medicine.

[27]  M. Nyman,et al.  Propionic and butyric acids, formed in the caecum of rats fed highly fermentable dietary fibre, are reflected in portal and aortic serum , 2013, British Journal of Nutrition.

[28]  Pelin Yilmaz,et al.  The SILVA ribosomal RNA gene database project: improved data processing and web-based tools , 2012, Nucleic Acids Res..

[29]  A. Klindworth,et al.  Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies , 2012, Nucleic acids research.

[30]  Jessica M. Lee,et al.  Mouse lipin-1 and lipin-2 cooperate to maintain glycerolipid homeostasis in liver and aging cerebellum , 2012, Proceedings of the National Academy of Sciences.

[31]  G. Schmitz,et al.  A rapid GC-MS method for quantification of positional and geometric isomers of fatty acid methyl esters. , 2012, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[32]  H. Flint,et al.  Microbial degradation of complex carbohydrates in the gut , 2012, Gut microbes.

[33]  R. Uwiera,et al.  Antibiotics conspicuously affect community profiles and richness, but not the density of bacterial cells associated with mucosa in the large and small intestines of mice. , 2012, Anaerobe.

[34]  R. Gibson,et al.  Elongase Reactions as Control Points in Long-Chain Polyunsaturated Fatty Acid Synthesis , 2011, PloS one.

[35]  Tetsuya Hayashi,et al.  Bile acid is a host factor that regulates the composition of the cecal microbiota in rats. , 2011, Gastroenterology.

[36]  M. Wagner,et al.  Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification , 2011, Applied and Environmental Microbiology.

[37]  F. Bäckhed.  Programming of Host Metabolism by the Gut Microbiota , 2011, Annals of Nutrition and Metabolism.

[38]  Anne E Carpenter,et al.  mTOR Complex 1 Regulates Lipin 1 Localization to Control the SREBP Pathway , 2011, Cell.

[39]  M. Mann,et al.  Andromeda: a peptide search engine integrated into the MaxQuant environment. , 2011, Journal of proteome research.

[40]  Markus R Wenk,et al.  Lipidomics: New Tools and Applications , 2010, Cell.

[41]  A. Nobel,et al.  Heading Down the Wrong Pathway: on the Influence of Correlation within Gene Sets , 2010, BMC Genomics.

[42]  G. Schmitz,et al.  Simultaneous quantification of cardiolipin, bis(monoacylglycero)phosphate and their precursors by hydrophilic interaction LC-MS/MS including correction of isotopic overlap. , 2010, Analytical chemistry.

[43]  G. Schmitz,et al.  Differential effects of conjugated linoleic acid isomers on macrophage glycerophospholipid metabolism[S] , 2010, Journal of Lipid Research.

[44]  W. Van den Broeck,et al.  Surface area assessment of the murine intestinal tract as a prerequisite for oral dose translation from mouse to man , 2010, Laboratory animals.

[45]  G. Schmitz,et al.  A rapid and quantitative LC-MS/MS method to profile sphingolipids , 2010, Journal of Lipid Research.

[46]  B. Finlay,et al.  Gut microbiota in health and disease. , 2010, Physiological reviews.

[47]  Laxman Yetukuri,et al.  The gut microbiota modulates host energy and lipid metabolism in mice[S] , 2010, Journal of Lipid Research.

[48]  G. Schmitz,et al.  Induction of fatty acid synthesis is a key requirement for phagocytic differentiation of human monocytes , 2010, Proceedings of the National Academy of Sciences.

[49]  Trevor Hastie,et al.  Regularization Paths for Generalized Linear Models via Coordinate Descent. , 2010, Journal of statistical software.

[50]  J. Gustafsson,et al.  Regulation of hepatic fatty acid elongase 5 by LXRalpha-SREBP-1c. , 2009, Biochimica et biophysica acta.

[51]  G. Schmitz,et al.  The opposing effects of n-3 and n-6 fatty acids. , 2008, Progress in lipid research.

[52]  G. Meer,et al.  Membrane lipids: where they are and how they behave , 2008, Nature Reviews Molecular Cell Biology.

[53]  J. Chun,et al.  EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. , 2007, International journal of systematic and evolutionary microbiology.

[54]  Hitoshi Shimano,et al.  Crucial role of a long-chain fatty acid elongase, Elovl6, in obesity-induced insulin resistance , 2007, Nature Medicine.

[55]  J. Tiedje,et al.  Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.

[56]  Jeffrey I. Gordon,et al.  Mechanisms underlying the resistance to diet-induced obesity in germ-free mice , 2007, Proceedings of the National Academy of Sciences.

[57]  Andrew B. Nobel,et al.  Significance analysis of functional categories in gene expression studies: a structured permutation approach , 2005, Bioinform..

[58]  D. Jump,et al.  Tissue-specific, nutritional, and developmental regulation of rat fatty acid elongases Published, JLR Papers in Press, January 16, 2005. DOI 10.1194/jlr.M400335-JLR200 , 2005, Journal of Lipid Research.

[59]  Gerd Schmitz,et al.  High-throughput quantification of phosphatidylcholine and sphingomyelin by electrospray ionization tandem mass spectrometry coupled with isotope correction algorithm. , 2004, Biochimica et biophysica acta.

[60]  Ting Wang,et al.  The gut microbiota as an environmental factor that regulates fat storage. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[61]  R. Murphy,et al.  Electrospray ionization tandem mass spectrometry of glycerophosphoethanolamine plasmalogen phospholipids , 2004, Journal of the American Society for Mass Spectrometry.

[62]  Andrzej Witkowski,et al.  Structural and functional organization of the animal fatty acid synthase. , 2003, Progress in lipid research.

[63]  M. Miyazaki,et al.  Role of stearoyl-coenzyme A desaturase in lipid metabolism. , 2003, Prostaglandins, leukotrienes, and essential fatty acids.

[64]  D. Moller,et al.  New drug targets for type 2 diabetes and the metabolic syndrome , 2001, Nature.

[65]  P. Clifton,et al.  Short-chain fatty acids and human colonic function: roles of resistant starch and nonstarch polysaccharides. , 2001, Physiological reviews.

[66]  M. Hellerstein,et al.  Mass isotopomer distribution analysis at eight years: theoretical, analytic, and experimental considerations. , 1999, The American journal of physiology.

[67]  R. Moletta,et al.  Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis , 1997, Applied and environmental microbiology.

[68]  R. Gleason,et al.  Similar 24-h pattern and rate of carbon dioxide production, by indirect calorimetry vs. stable isotope dilution, in healthy adults under standardized metabolic conditions. , 1994, The Journal of nutrition.

[69]  T. Wolever,et al.  Effect of rectal infusion of short chain fatty acids in human subjects. , 1989, The American journal of gastroenterology.

[70]  G. Macfarlane,et al.  Short chain fatty acids in human large intestine, portal, hepatic and venous blood. , 1987, Gut.

[71]  J. Slavin,et al.  Neutral detergent fiber, hemicellulose and cellulose digestibility in human subjects. , 1981, The Journal of nutrition.

[72]  B. Kuster,et al.  High pH Reversed-Phase Micro-Columns for Simple, Sensitive, and Efficient Fractionation of Proteome and (TMT labeled) Phosphoproteome Digests. , 2017, Methods in molecular biology.

[73]  Heiner Koch,et al.  Optimized Enrichment of Phosphoproteomes by Fe-IMAC Column Chromatography. , 2017, Methods in molecular biology.

[74]  B. Kuster,et al.  Hydrophilic Strong Anion Exchange (hSAX) Chromatography Enables Deep Fractionation of Tissue Proteomes. , 2017, Methods in molecular biology.

[75]  B. Fielding,et al.  Stearoyl-CoA desaturase: rogue or innocent bystander? , 2013, Progress in lipid research.

[76]  M. Mann,et al.  Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips , 2007, Nature Protocols.