The impact of a bistrand abasic lesion on DNA duplex properties

[1]  A. F. Fuciarelli,et al.  Radiation damage in DNA : structure/function relationships at early times , 1996 .

[2]  K. Breslauer,et al.  Influence of the oxidatively damaged adduct 8-oxodeoxyguanosine on the conformation, energetics, and thermodynamic stability of a DNA duplex. , 1995, Biochemistry.

[3]  A. Grollman,et al.  Incision Activity of Human Apurinic Endonuclease (Ape) at Abasic Site Analogs in DNA (*) , 1995, The Journal of Biological Chemistry.

[4]  K. Breslauer,et al.  The thermodynamics of DNA structures that contain lesions or guanine tetrads. , 1995, Current opinion in structural biology.

[5]  M. Singh,et al.  High-field NMR and restrained molecular modeling studies on a DNA heteroduplex containing a modified apurinic abasic site in the form of covalently linked 9-aminoellipticine. , 1994, Biochemistry.

[6]  M. Takeshita,et al.  Interactions of Escherichia coli endonuclease IV and exonuclease III with abasic sites in DNA. , 1994, The Journal of biological chemistry.

[7]  A. Sarvazyan,et al.  Hydration and partial compressibility of biological compounds. , 1994, Biophysical chemistry.

[8]  J. Sekiguchi,et al.  Properties of DNA duplexes containing an abasic site : effect of nucleotide residue of the opposite part of a 2-deoxyribosylformamide residue , 1994 .

[9]  M. Takeshita,et al.  Mechanism of mutation on DNA templates containing synthetic abasic sites: study with a double strand vector. , 1994, Nucleic acids research.

[10]  B Demple,et al.  Repair of oxidative damage to DNA: enzymology and biology. , 1994, Annual review of biochemistry.

[11]  K. Breslauer.  Extracting thermodynamic data from equilibrium melting curves for oligonucleotide order-disorder transitions. , 1995, Methods in enzymology.

[12]  R. Eritja,et al.  Kinetics of deoxyribonucleotide insertion and extension at abasic template lesions in different sequence contexts using HIV-1 reverse transcriptase. , 1993, The Journal of biological chemistry.

[13]  P. Doetsch,et al.  Effects of abasic sites and DNA single-strand breaks on prokaryotic RNA polymerases. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[14]  P. Bolton,et al.  Effects of the presence of an aldehydic abasic site on the thermal stability and rates of helix opening and closing of duplex DNA. , 1992, Biochemistry.

[15]  P. Dedon,et al.  Free-radical mechanisms involved in the formation of sequence-dependent bistranded DNA lesions by the antitumor antibiotics bleomycin, neocarzinostatin, and calicheamicin. , 1992, Chemical research in toxicology.

[16]  M. Straume,et al.  Calorimetry: a tool for DNA and ligand-DNA studies. , 1992, Methods in enzymology.

[17]  R. Ratliff,et al.  Circular dichroism spectroscopy of DNA. , 1992, Methods in enzymology.

[18]  J. Gerlt,et al.  Characterization of conformational features of DNA heteroduplexes containing aldehydic abasic sites. , 1991, Biochemistry.

[19]  I. Goldberg.  Mechanism of Neocarzinostatin Action: Role of DNA Microstructure in Determination of Chemistry of Bistranded Oxidative Damage , 1991 .

[20]  D. Patel,et al.  Structural features of an exocyclic adduct positioned opposite an abasic site in a DNA duplex. , 1991, Biochemistry.

[21]  P. Cuniasse,et al.  The abasic site as a challenge to DNA polymerase. A nuclear magnetic resonance study of G, C and T opposite a model abasic site. , 1990, Journal of molecular biology.

[22]  L. Povirk,et al.  Effect of in vitro cleavage of apurinic/apyrimidinic sites on bleomycin-induced mutagenesis of repackaged lambda phage. , 1990, Mutation research.

[23]  K. Breslauer,et al.  Influence of abasic and anucleosidic sites on the stability, conformation, and melting behavior of a DNA duplex: correlations of thermodynamic and structural data. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[24]  D. Patel,et al.  NMR studies of abasic sites in DNA duplexes: deoxyadenosine stacks into the helix opposite acyclic lesions. , 1989, Biochemistry.

[25]  R. Eritja,et al.  Abasic frameshift in DNA. Solution conformation determined by proton NMR and molecular mechanics calculations. , 1989, Biochemistry.

[26]  D. Patel,et al.  NMR studies of abasic sites in DNA duplexes: deoxyadenosine stacks into the helix opposite the cyclic analogue of 2-deoxyribose. , 1988, Biochemistry.

[27]  S. Wallace.  AP endonucleases and DNA glycosylases that recognize oxidative DNA damage. , 1988, Environmental and molecular mutagenesis.

[28]  K. Breslauer,et al.  Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves , 1987, Biopolymers.

[29]  A. Grollman,et al.  Oligodeoxynucleotides containing synthetic abasic sites. Model substrates for DNA polymerases and apurinic/apyrimidinic endonucleases. , 1987, The Journal of biological chemistry.

[30]  R. Eritja,et al.  Nucleotide insertion kinetics opposite abasic lesions in DNA. , 1987, The Journal of biological chemistry.

[31]  H. Blöcker,et al.  Predicting DNA duplex stability from the base sequence. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[32]  L. Loeb,et al.  Mutagenesis by apurinic/apyrimidinic sites. , 1986, Annual review of genetics.

[33]  T. Lindahl.  DNA repair enzymes. , 1982, Annual review of biochemistry.

[34]  T. Lindahl,et al.  Rate of depurination of native deoxyribonucleic acid. , 1972, Biochemistry.

[35]  A. Rich,et al.  Studies on the formation of two- and three-stranded polyribonucleotides. , 1957, Biochimica et biophysica acta.

[36]  A. R. Mcintyre,et al.  Inorganic Phosphates and Phosphate Esters in Tissue Extracts , 1951 .

[37]  F. D. Snell,et al.  Colorimetric Methods of Analysis , 1945 .