Crystal Structure of a Full-Length Human Tetraspanin Reveals a Cholesterol-Binding Pocket
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Ron O. Dror | Stephen C. Blacklow | Brendan Kelly | Andrew C. Kruse | R. Dror | S. Blacklow | A. Kruse | Brandon Zimmerman | T. Seegar | Brandon Zimmerman | Brian J. McMillan | Tom C.M. Seegar | B. McMillan | B. Kelly
[1] A. Xu,et al. The phylogenetic analysis of tetraspanins projects the evolution of cell-cell interactions from unicellular to multicellular organisms. , 2005, Genomics.
[2] M. Hemler. Tetraspanin proteins promote multiple cancer stages , 2013, Nature Reviews Cancer.
[3] Daniel R Roe,et al. PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data. , 2013, Journal of chemical theory and computation.
[4] S. Levy,et al. The Tetraspanin CD81 Is Necessary for Partitioning of Coligated CD19/CD21-B Cell Antigen Receptor Complexes into Signaling-Active Lipid Rafts 1 , 2004, The Journal of Immunology.
[5] J Hermans,et al. Hydrophilicity of cavities in proteins , 1996, Proteins.
[6] D. Higgins,et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega , 2011, Molecular systems biology.
[7] K Schulten,et al. VMD: visual molecular dynamics. , 1996, Journal of molecular graphics.
[8] D. Gerlier,et al. A physical and functional link between cholesterol and tetraspanins , 2003, European journal of immunology.
[9] Vincent B. Chen,et al. Correspondence e-mail: , 2000 .
[10] S. Harrison,et al. The Monopolin Complex Crosslinks Kinetochore Components to Regulate Chromosome-Microtubule Attachments , 2010, Cell.
[11] R. Levy,et al. TAPA-1, the target of an antiproliferative antibody, defines a new family of transmembrane proteins , 1990, Molecular and cellular biology.
[12] P. Zwart,et al. Towards automated crystallographic structure refinement with phenix.refine , 2012, Acta crystallographica. Section D, Biological crystallography.
[13] S. Levy,et al. The tetraspanin web modulates immune-signalling complexes , 2005, Nature Reviews Immunology.
[14] O. Barreiro,et al. Tetraspanin-enriched microdomains: a functional unit in cell plasma membranes. , 2009, Trends in cell biology.
[15] R. Yauch,et al. Highly stoichiometric, stable, and specific association of integrin alpha3beta1 with CD151 provides a major link to phosphatidylinositol 4-kinase, and may regulate cell migration. , 1998, Molecular biology of the cell.
[16] R. DeSalle,et al. Appearance of new tetraspanin genes during vertebrate evolution. , 2008, Genomics.
[17] M. Wright,et al. Tetraspanin CD37 Regulates β2 Integrin–Mediated Adhesion and Migration in Neutrophils , 2015, The Journal of Immunology.
[18] P. Noy,et al. TspanC8 Tetraspanins and A Disintegrin and Metalloprotease 10 (ADAM10) Interact via Their Extracellular Regions , 2015, The Journal of Biological Chemistry.
[19] M. V. van Zelm,et al. A mutation in the human tetraspanin CD81 gene is expressed as a truncated protein but does not enable CD19 maturation and cell surface expression , 2015, Journal of Clinical Immunology.
[20] W. Delano. The PyMOL Molecular Graphics System , 2002 .
[21] C. Boucheix,et al. CD19 Is Linked to the Integrin-associated Tetraspans CD9, CD81, and CD82* , 1998, The Journal of Biological Chemistry.
[22] Thomas S. Lin,et al. Targeting CD37-positive lymphoid malignancies with a novel engineered small modular immunopharmaceutical. , 2007, Blood.
[23] M. Houghton,et al. Binding of hepatitis C virus to CD81. , 1998, Science.
[24] N. Burton,et al. CD151, the first member of the tetraspanin (TM4) superfamily detected on erythrocytes, is essential for the correct assembly of human basement membranes in kidney and skin. , 2004, Blood.
[25] Thomas A. Hopf,et al. Protein structure prediction from sequence variation , 2012, Nature Biotechnology.
[26] L. Ashman,et al. Multiple levels of interactions within the tetraspanin web. , 2003, Biochemical and biophysical research communications.
[27] R. Lüllmann-Rauch,et al. Deficiency of the Tetraspanin CD63 Associated with Kidney Pathology but Normal Lysosomal Function , 2008, Molecular and Cellular Biology.
[28] Martin Phillips,et al. Toward the structural genomics of complexes: crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[29] Piotr Sliz,et al. Collaboration gets the most out of software , 2013, eLife.
[30] C. Figdor,et al. The tetraspanin web revisited by super-resolution microscopy , 2015, Scientific Reports.
[31] G. Bismuth,et al. Tetraspanin CD82 controls the association of cholesterol-dependent microdomains with the actin cytoskeleton in T lymphocytes: relevance to co-stimulation , 2004, Journal of Cell Science.
[32] P. Milhiet,et al. TspanC8 tetraspanins differentially regulate the cleavage of ADAM10 substrates, Notch activation and ADAM10 membrane compartmentalization , 2015, Cellular and Molecular Life Sciences.
[33] M. Bolognesi,et al. Subunit Association and Conformational Flexibility in the Head Subdomain of Human CD81 Large Extracellular Loop , 2002, Biological chemistry.
[34] V. Cherezov,et al. Crystallizing membrane proteins using lipidic mesophases , 2009, Nature Protocols.
[35] Alessandra Cambi,et al. The Tetraspanin CD37 Orchestrates the α4β1 Integrin–Akt Signaling Axis and Supports Long-Lived Plasma Cell Survival , 2012, Science Signaling.
[36] Tal Pupko,et al. ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids , 2010, Nucleic Acids Res..
[37] Duncan Poole,et al. Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald. , 2013, Journal of chemical theory and computation.
[38] Kevin Cowtan,et al. research papers Acta Crystallographica Section D Biological , 2005 .
[39] Alexander D. MacKerell,et al. Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types. , 2010, The journal of physical chemistry. B.
[40] M. Hemler. Tetraspanin functions and associated microdomains , 2005, Nature Reviews Molecular Cell Biology.
[41] Alexander D. MacKerell,et al. Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles. , 2012, Journal of chemical theory and computation.
[42] S. Watson,et al. The TspanC8 Subgroup of Tetraspanins Interacts with A Disintegrin and Metalloprotease 10 (ADAM10) and Regulates Its Maturation and Cell Surface Expression* , 2012, The Journal of Biological Chemistry.
[43] Itay Mayrose,et al. ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures , 2005, Nucleic Acids Res..
[44] M. Tomlinson,et al. Organisation of the Tetraspanin Web , 2013 .
[45] J. Kreidberg,et al. Palmitoylation of tetraspanin proteins: modulation of CD151 lateral interactions, subcellular distribution, and integrin-dependent cell morphology. , 2002, Molecular biology of the cell.
[46] T. V. Kolesnikova,et al. Functional domains in tetraspanin proteins. , 2003, Trends in biochemical sciences.
[47] G. van Gemert,et al. Cholesterol contributes to the organization of tetraspanin-enriched microdomains and to CD81-dependent infection by malaria sporozoites , 2006, Journal of Cell Science.
[48] F. Schweisguth,et al. Correction: TspanC8 tetraspanins regulate ADAM10/Kuzbanian trafficking and promote Notch activation in flies and mammals , 2012, The Journal of cell biology.
[49] W. Bornmann,et al. B Cell Signaling Is Regulated by Induced Palmitoylation of CD81* , 2004, Journal of Biological Chemistry.
[50] F. Schweisguth,et al. TspanC8 tetraspanins regulate ADAM10/Kuzbanian trafficking and promote Notch activation in flies and mammals , 2012, The Journal of cell biology.
[51] Yi Xia,et al. Tetraspanin CD37 protects against the development of B cell lymphoma. , 2016, The Journal of clinical investigation.
[52] Alexander D. MacKerell,et al. All-atom empirical potential for molecular modeling and dynamics studies of proteins. , 1998, The journal of physical chemistry. B.
[53] C. Jasmin,et al. Severely reduced female fertility in CD9-deficient mice. , 2000, Science.
[54] T. Chittenden,et al. A novel anti-CD37 antibody-drug conjugate with multiple anti-tumor mechanisms for the treatment of B-cell malignancies. , 2013, Blood.
[55] Duncan Poole,et al. Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born , 2012, Journal of chemical theory and computation.
[56] M. Seigneuret. Complete predicted three-dimensional structure of the facilitator transmembrane protein and hepatitis C virus receptor CD81: conserved and variable structural domains in the tetraspanin superfamily. , 2006, Biophysical journal.
[57] Thomas A. Hopf,et al. Three-Dimensional Structures of Membrane Proteins from Genomic Sequencing , 2012, Cell.
[58] S. Levy,et al. The CD19/CD21 signal transducing complex of human B lymphocytes includes the target of antiproliferative antibody-1 and Leu-13 molecules. , 1992, Journal of immunology.
[59] Alexander D. MacKerell,et al. Inclusion of many-body effects in the additive CHARMM protein CMAP potential results in enhanced cooperativity of α-helix and β-hairpin formation. , 2012, Biophysical journal.
[60] M. van der Burg,et al. CD81 gene defect in humans disrupts CD19 complex formation and leads to antibody deficiency. , 2010, The Journal of clinical investigation.
[61] Jing Huang,et al. CHARMM36 all‐atom additive protein force field: Validation based on comparison to NMR data , 2013, J. Comput. Chem..
[62] A. Kruse,et al. Applications of molecular replacement to G protein-coupled receptors , 2013, Acta crystallographica. Section D, Biological crystallography.
[63] M. Wright,et al. Characterization of Mice Lacking the Tetraspanin Superfamily Member CD151 , 2004, Molecular and Cellular Biology.
[64] Andreas Bruckbauer,et al. The actin and tetraspanin networks organize receptor nanoclusters to regulate B cell receptor-mediated signaling. , 2013, Immunity.
[65] Andreas W. Götz,et al. SPFP: Speed without compromise - A mixed precision model for GPU accelerated molecular dynamics simulations , 2013, Comput. Phys. Commun..
[66] T. Sun,et al. Structural basis for tetraspanin functions as revealed by the cryo-EM structure of uroplakin complexes at 6-Å resolution , 2006, The Journal of cell biology.