Statistical evaluation of cell kinetic data from DNA flow cytometry (FCM) by the EM algorithm.

Flow cytometric DNA measurements yield the amount of DNA for each of a large number of cells. A DNA histogram normally consists of a mixture of one or more constellations of G0/G1-, S-, G2/M-phase cells, together with internal standards, debris, background noise, and one or more populations of clumped cells. We have modelled typical DNA histograms as a mixed distribution with Gaussian densities for the G0/G1 and G2/M phases, an S-phase density, assumed to be uniform between the G0/G1 and G2/M peaks, observed with a Gaussian error, and with Gaussian densities for standards of chicken and trout red blood cells. The debris is modelled as a truncated exponential distribution, and we also have included a uniform background noise distribution over the whole observation interval. We have explored a new approach for maximum-likelihood analyses of complex DNA histograms by the application of the EM algorithm. This algorithm was used for four observed DNA histograms of varying complexity. Our results show that the algorithm works very well, and it converges to reasonable values for all parameters. In simulations from the estimated models, we have investigated bias, variance, and correlations of the estimates.

[1]  W. Göhde,et al.  Cycling S-phase cells in animal and spontaneous tumours. I. Comparison of the BrdUrd and 3H-thymidine techniques and flow cytometry for the estimation of S-phase frequency. , 1985, Acta radiologica. Oncology.

[2]  J. Fried,et al.  Multi-user system for analysis of data from flow cytometry. , 1979, Computer programs in biomedicine.

[3]  J. Jett,et al.  MATHEMATICAL ANALYSIS OF DNA DISTRIBUTIONS DERIVED FROM FLOW MICROFLUOROMETRY , 1974, The Journal of cell biology.

[4]  W. Göhde,et al.  Analysis of PCP-data to determine the fraction of cells in the various phases of cell cycle , 1975, Radiation and environmental biophysics.

[5]  J. Gray,et al.  Cytokinetic properties of asynchronous and cytosine arabinoside perturbed murine tumors measured by simultaneous bromodeoxyuridine/DNA analyses. , 1985, Cytometry.

[6]  W. Hiddemann,et al.  Convention on nomenclature for DNA cytometry , 1984 .

[7]  W. Göhde,et al.  Simultane Impulsfluorimetrie des DNS- und Proteingehaltes von Tumorzellen , 1970 .

[8]  E. Sugarbaker,et al.  Preparation of tissues for DNA flow cytometric analysis. , 1980, Cytometry.

[9]  J. Watson,et al.  Improved program for the analysis of DNA histograms. , 1987, Cytometry.

[10]  L. Kamentsky,et al.  Spectrophotometer: New Instrument for Ultrarapid Cell Analysis , 1965, Science.

[11]  J. Gray,et al.  CELL CYCLE ANALYSIS FROM COMPUTER SYNTHESIS OF DEOXYRIBONUCLEIC ACID HISTOGRAMS , 1974, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[12]  J. Gray,et al.  Cell cycle analysis using numerical simulation of bivariate DNA/bromodeoxyuridine distributions. , 1985, Cytometry.

[13]  B. Barlogie,et al.  Flow cytometry in clinical cancer research. , 1983, Cancer research.

[14]  J V Watson,et al.  A pragmatic approach to the analysis of DNA histograms with a definable G1 peak. , 1987, Cytometry.

[15]  P. Dean,et al.  Cell‐Cycle Analysis Using A Monoclonal Antibody to Brdurd , 1984, Cell and tissue kinetics.

[16]  T. Lindmo,et al.  Flow cytometry and sorting , 1979 .

[17]  N. Petrelli,et al.  Flow cytometric analysis of DNA aneuploidy in primary and metastatic human solid tumors. , 1984, Cytometry.

[18]  D. Rubin,et al.  Maximum likelihood from incomplete data via the EM - algorithm plus discussions on the paper , 1977 .

[19]  R G Sweet,et al.  Fluorescence Activated Cell Sorting , 2020, Definitions.

[20]  J W Gray,et al.  Display and analysis of flow cytometric data. , 1980, Annual review of biophysics and bioengineering.

[21]  J. Fried Method for the quantitative evaluation of data from flow microfluorometry. , 1976, Computers and biomedical research, an international journal.

[22]  B. Barlogie,et al.  Prognostic implications of ploidy and proliferative activity in human solid tumors. , 1982, Cancer genetics and cytogenetics.

[23]  J. Fried Analysis of deoxyribonucleic acid histograms from flow cytofluorometry. Estimation of the distribution of cells within S phase. , 1977, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[24]  L. Wheeless,et al.  Quantitative single cell analysis and sorting. , 1977, Science.

[25]  C Nicolini,et al.  A comparison of mathematical methods for the analysis of DNA histograms obtained by flow cytometry , 1982, Cell and tissue kinetics.

[26]  J W Gray,et al.  Cell cycle analysis using flow cytometry. , 1986, International journal of radiation biology and related studies in physics, chemistry, and medicine.

[27]  J. Jett,et al.  Mathematical analysis of DNA histograms from asynchronous and synchronous cell populations , 1977 .

[28]  H. Gratzner,et al.  Monoclonal antibody to 5-bromo- and 5-iododeoxyuridine: A new reagent for detection of DNA replication. , 1982, Science.

[29]  D. Killander,et al.  Flow‐Cytometric DNA analysis in primary breast carcinomas and clinicopthological correlations , 1984 .

[30]  F. G. Boese Comments on "Parametric analysis of histograms measured in flow cytometry". , 1986, Cytometry.

[31]  A. F. Smith,et al.  Statistical analysis of finite mixture distributions , 1986 .

[32]  T. Louis Finding the Observed Information Matrix When Using the EM Algorithm , 1982 .

[33]  P. F. Mullaney,et al.  Cell Microfluorometry: A Method for Rapid Fluorescence Measurement , 1969, Science.

[34]  E. Rasch,et al.  Picogram per cell determination of DNA by flow cytofluorometry. , 1984, Analytical biochemistry.

[35]  F. Bosman,et al.  An improved method for the immunocytochemical detection of bromodeoxyuridine labeled nuclei using flow cytometry. , 1987, Cytometry.

[36]  I J Christensen,et al.  Standardization of high-resolution flow cytometric DNA analysis by the simultaneous use of chicken and trout red blood cells as internal reference standards. , 1983, Cytometry.

[37]  R E Hand,et al.  Parametric analysis of histograms measured in flow cytometry. , 1983, Cytometry.

[38]  B. Barlogie,et al.  Automatic processing and interpretation of DNA distributions: comparison of several techniques. , 1978, Computers and biomedical research, an international journal.

[39]  J. Gray CELL‐CYCLE ANALYSIS OF PERTURBED CELL POPULATIONS: COMPUTER SIMULATION OF SEQUENTIAL DNA DISTRIBUTIONS , 1976, Cell and tissue kinetics.