A novel deletion in KRT75L4 mediates the frizzle trait in a Chinese indigenous chicken

[1]  L. Orlando,et al.  AdapterRemoval v2: rapid adapter trimming, identification, and read merging , 2016, BMC Research Notes.

[2]  Carson C Chow,et al.  Second-generation PLINK: rising to the challenge of larger and richer datasets , 2014, GigaScience.

[3]  W. Huber,et al.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.

[4]  J. Hamidu,et al.  Effect of the frizzle gene (F) on egg production and egg quality of laying hens kept in tropical villages , 2014, British poultry science.

[5]  C. Chuong,et al.  Genomic Organization, Transcriptomic Analysis, and Functional Characterization of Avian α- and β-Keratins in Diverse Feather Forms , 2014, Genome biology and evolution.

[6]  P. Coulombe,et al.  The expanding significance of keratin intermediate filaments in normal and diseased epithelia. , 2013, Current opinion in cell biology.

[7]  Helga Thorvaldsdóttir,et al.  Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration , 2012, Briefings Bioinform..

[8]  Cole Trapnell,et al.  TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions , 2013, Genome Biology.

[9]  P. Patel,et al.  The Chicken Frizzle Feather Is Due to an α-Keratin (KRT75) Mutation That Causes a Defective Rachis , 2012, PLoS genetics.

[10]  H. Hoekstra,et al.  Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species , 2012, PloS one.

[11]  Helga Thorvaldsdóttir,et al.  Integrative Genomics Viewer , 2011, Nature Biotechnology.

[12]  M. DePristo,et al.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.

[13]  P. Maderson,et al.  Towards a comprehensive model of feather regeneration , 2009, Journal of morphology.

[14]  Richard Durbin,et al.  Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .

[15]  M. Tixier-Boichard,et al.  Performance comparison of dwarf laying hens segregating for the naked neck gene in temperate and subtropical environments , 2009, Genetics Selection Evolution.

[16]  A. V. Zárate,et al.  Effects of the genetically reduced feather coverage in naked neck and featherless broilers on their performance under hot conditions. , 2008, Poultry science.

[17]  L. Alibardi,et al.  Cytochemical and molecular characteristics of the process of cornification during feather morphogenesis. , 2008, Progress in histochemistry and cytochemistry.

[18]  F. B. Hutt.  The genetics of the fowl , 1930, Journal of Genetics.

[19]  N. Sellier,et al.  Interactions between the naked neck gene, sex, and fluctuating ambient temperature on heat tolerance, growth, body composition, meat quality, and sensory analysis of slow growing meat-type broilers , 2007 .

[20]  M. Hesse,et al.  Comprehensive analysis of keratin gene clusters in humans and rodents. , 2004, European journal of cell biology.

[21]  Cathy H. Wu,et al.  UniProt: the Universal Protein knowledgebase , 2004, Nucleic Acids Res..

[22]  J. Schweizer,et al.  Type II epithelial keratin 6hf (K6hf) is expressed in the companion layer, matrix, and medulla in anagen-stage hair follicles. , 2003, The Journal of investigative dermatology.

[23]  W. Muir,et al.  Genotype-environment interactions: problems associated with selection for increased production. , 2003 .

[24]  D. Roop,et al.  Discovery of a novel murine keratin 6 (K6) isoform explains the absence of hair and nail defects in mice deficient for K6a and K6b , 2001, The Journal of cell biology.

[25]  R. Prum,et al.  Theory of the growth and evolution of feather shape. , 2001, The Journal of experimental zoology.

[26]  N. Deeb,et al.  The effects of naked neck genotypes, ambient temperature, and feeding status and their interactions on body temperature and performance of broilers. , 1999, Poultry science.

[27]  R. Yunis,et al.  The effects of the naked neck (Na) and frizzle (F) genes on growth and meat yield of broilers and their interactions with ambient temperatures and potential growth rate. , 1999, Poultry science.

[28]  H. Winter,et al.  A novel human type II cytokeratin, K6hf, specifically expressed in the companion layer of the hair follicle. , 1998, The Journal of investigative dermatology.

[29]  E. Fuchs,et al.  A structural scaffolding of intermediate filaments in health and disease. , 1998, Science.

[30]  R. Somes.  Guinea Fowl Plumage Color Inheritance, With Particular Attention on the Dun Color , 1996 .

[31]  D. Eberhart,et al.  Variation in body temperature response of naked neck and normally feathered chickens to heat stress. , 1993, Poultry science.

[32]  L. C. Dunn,et al.  THE “ FRIZZLE ” CHARACTERS OF FOWLSIts Expression and Inheritance , 1930 .