The smallest chemical reaction system with bistability
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[1] Naren Ramakrishnan,et al. Memory Switches in Chemical Reaction Space , 2008, PLoS Comput. Biol..
[2] J. Demongeot,et al. Positive and negative feedback: striking a balance between necessary antagonists. , 2002, Journal of theoretical biology.
[3] J. Ferrell. Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. , 2002, Current opinion in cell biology.
[4] Steffen Klamt,et al. A methodology for the structural and functional analysis of signaling and regulatory networks , 2006, BMC Bioinformatics.
[5] R. Thomas,et al. The role of feedback circuits: Positive feedback circuits are a necessary condition for positive real eigenvalues of the Jacobian matrix , 1994 .
[6] S. Schuster,et al. Understanding the roadmap of metabolism by pathway analysis. , 2007, Methods in molecular biology.
[7] Peter E. Strizhak,et al. Stochastic Resonance in a Bistable Chemical System: The Oxidation of Ascorbic Acid by Oxygen Catalyzed by Copper(ii) Ions , 2000 .
[8] J. Higgins. The Theory of Oscillating Reactions - Kinetics Symposium , 1967 .
[9] Thomas Wilhelm,et al. Smallest chemical reaction system with Hopf bifurcation , 1995 .
[10] Eduardo Sontag,et al. Untangling the wires: A strategy to trace functional interactions in signaling and gene networks , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[11] J. Keizer. Biochemical Oscillations and Cellular Rhythms: The molecular bases of periodic and chaotic behaviour, by Albert Goldbeter , 1998 .
[12] Thomas Wilhelm,et al. Mathematical analysis of the smallest chemical reaction system with Hopf bifurcation , 1996 .
[13] Timothy M. Lenton,et al. Bistability of atmospheric oxygen and the Great Oxidation , 2006, Nature.
[14] B. L. Clarke. Stability of Complex Reaction Networks , 2007 .
[15] Alexander E. Kel,et al. TRANSFAC® and its module TRANSCompel®: transcriptional gene regulation in eukaryotes , 2005, Nucleic Acids Res..
[16] B. Kholodenko,et al. Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades , 2004, The Journal of cell biology.
[17] James E. Ferrell,et al. Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible. , 2001, Chaos.
[18] Tae J. Lee,et al. A bistable Rb–E2F switch underlies the restriction point , 2008, Nature Cell Biology.
[19] T. Wilhelm. Analysis of structures causing instabilities. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.
[20] Dávid Csercsik,et al. A simple reaction kinetic model of rapid (G protein dependent) and slow (beta-Arrestin dependent) transmission. , 2008, Journal of theoretical biology.
[21] Alexander E. Kel,et al. TRANSPATH®: an information resource for storing and visualizing signaling pathways and their pathological aberrations , 2005, Nucleic Acids Res..
[22] F. Schlögl. Chemical reaction models for non-equilibrium phase transitions , 1972 .
[23] A. K. Dutt. Non-equilibrium thermodynamics of a model bistable chemical system , 2000 .
[24] Jörg Raisch,et al. Multistationarity in the activation of a MAPK: parametrizing the relevant region in parameter space. , 2008, Mathematical biosciences.
[25] Antje Chang,et al. BRENDA , the enzyme database : updates and major new developments , 2003 .
[26] Guy Dewel,et al. Relaxation kinetics near the hysteresis limit of a bistable chemical system: The chlorite-iodide reaction in a CSTR , 1987 .
[27] F. Allgöwer,et al. Bistability Analyses of a Caspase Activation Model for Receptor-induced Apoptosis* , 2004, Journal of Biological Chemistry.
[28] E. Sel'kov,et al. Self-oscillations in glycolysis. 1. A simple kinetic model. , 1968, European journal of biochemistry.
[29] Martin Howard,et al. An experimentalist's guide to computational modelling of the Min system , 2007, Molecular microbiology.
[30] James E. Ferrell,et al. A positive-feedback-based bistable ‘memory module’ that governs a cell fate decision , 2007, Nature.
[31] Alexandra Jilkine,et al. Wave-pinning and cell polarity from a bistable reaction-diffusion system. , 2008, Biophysical journal.
[32] Thomas Wilhelm,et al. An evolutionary approach to enzyme kinetics: Optimization of ordered mechanisms , 1994 .
[33] Prahlad T. Ram,et al. MAP Kinase Phosphatase As a Locus of Flexibility in a Mitogen-Activated Protein Kinase Signaling Network , 2002, Science.
[34] M. Feinberg,et al. Understanding bistability in complex enzyme-driven reaction networks. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[35] M Laurent,et al. Prion diseases: dynamics of the infection and properties of the bistable transition. , 2001, Biophysical journal.
[36] V. Arnold,et al. Ordinary Differential Equations , 1973 .
[37] A. J. Lotka. UNDAMPED OSCILLATIONS DERIVED FROM THE LAW OF MASS ACTION. , 1920 .
[38] O. Kuipers,et al. Bistability, epigenetics, and bet-hedging in bacteria. , 2008, Annual review of microbiology.
[39] Ertugrul M. Ozbudak,et al. Multistability in the lactose utilization network of Escherichia coli , 2004, Nature.
[40] Frank Allgöwer,et al. Steady state and (bi-) stability evaluation of simple protease signalling networks , 2007, Biosyst..
[41] K R Schneider,et al. Model reduction by extended quasi-steady-state approximation , 2000, Journal of mathematical biology.
[42] J E Ferrell,et al. The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes. , 1998, Science.
[43] Jörg Raisch,et al. Subnetwork analysis reveals dynamic features of complex (bio)chemical networks , 2007, Proceedings of the National Academy of Sciences.
[44] A. Goldbeter. Computational approaches to cellular rhythms , 2002, Nature.
[45] C. Soulé. Graphic Requirements for Multistationarity , 2004, Complexus.
[46] I. Prigogine,et al. Symmetry Breaking Instabilities in Dissipative Systems. II , 1968 .
[47] Anne Shiu,et al. The Smallest Multistationary Mass-Preserving Chemical Reaction Network , 2008, AB.
[48] Benjamin L Turner,et al. Supporting Online Material Materials and Methods Som Text Figs. S1 to S3 Table S1 References Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops , 2022 .
[49] V. Volterra. Fluctuations in the Abundance of a Species considered Mathematically , 1926, Nature.
[50] Peter J. Verveer,et al. EGFR activation coupled to inhibition of tyrosine phosphatases causes lateral signal propagation , 2003, Nature Cell Biology.
[51] Pablo A. Iglesias,et al. MAPK-mediated bimodal gene expression and adaptive gradient sensing in yeast , 2007, Nature.
[52] H. Kreuzer,et al. Theory of oscillating reactions , 1990 .
[53] Thomas Wilhelm,et al. Chemical systems consisting only of elementary steps – a paradigma for nonlinear behavior , 2000 .
[54] D. Kim,et al. A hidden oncogenic positive feedback loop caused by crosstalk between Wnt and ERK Pathways , 2007, Oncogene.
[55] Kiyoko F. Aoki-Kinoshita,et al. From genomics to chemical genomics: new developments in KEGG , 2005, Nucleic Acids Res..
[56] P. Hartman. Ordinary Differential Equations , 1965 .
[57] Katherine C. Chen,et al. Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. , 2003, Current opinion in cell biology.
[58] J. Schnakenberg,et al. Simple chemical reaction systems with limit cycle behaviour. , 1979, Journal of theoretical biology.
[59] Xiao-Jing Wang,et al. The Stability of a Stochastic CaMKII Switch: Dependence on the Number of Enzyme Molecules and Protein Turnover , 2005, PLoS biology.