Systems biology beyond degree, hubs and scale-free networks: the case for multiple metrics in complex networks
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[1] Ganesh Bagler,et al. Assortative mixing in Protein Contact Networks and protein folding kinetics , 2007, Bioinform..
[2] Shekhar C. Mande,et al. Dynamic Changes in Protein Functional Linkage Networks Revealed by Integration with Gene Expression Data , 2008, PLoS Comput. Biol..
[3] M E J Newman. Assortative mixing in networks. , 2002, Physical review letters.
[4] G. Church,et al. Analysis of optimality in natural and perturbed metabolic networks , 2002 .
[5] Mark Newman,et al. Networks: An Introduction , 2010 .
[6] R. Guimerà,et al. The worldwide air transportation network: Anomalous centrality, community structure, and cities' global roles , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[7] Zeba Wunderlich,et al. Using the topology of metabolic networks to predict viability of mutant strains. , 2006, Biophysical journal.
[8] Soumen Roy,et al. Resilience and rewiring of the passenger airline networks in the United States. , 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.
[9] Christopher D. Brown,et al. Analysis of Drosophila Segmentation Network Identifies a JNK Pathway Factor Overexpressed in Kidney Cancer , 2009, Science.
[10] Matthew W. Hahn,et al. Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks. , 2005, Molecular biology and evolution.
[11] B. Palsson,et al. The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[12] Mark E. J. Newman,et al. Power-Law Distributions in Empirical Data , 2007, SIAM Rev..
[13] Premkumar T. Devanbu,et al. Modeling and verifying a broad array of network properties , 2008, 0805.1489.
[14] Leonard M. Freeman,et al. A set of measures of centrality based upon betweenness , 1977 .
[15] Vladimir Filkov,et al. Strong associations between microbe phenotypes and their network architecture. , 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.
[16] O. de Weck,et al. Overview of metrics and their correlation patterns for multiple-metric topology analysis on heterogeneous graph ensembles. , 2012, Physical review. E, Statistical, nonlinear, and soft matter physics.
[17] Albert-László Barabási,et al. Error and attack tolerance of complex networks , 2000, Nature.
[18] Tom A. B. Snijders,et al. Social Network Analysis , 2011, International Encyclopedia of Statistical Science.
[19] Albert-László Barabási,et al. Statistical mechanics of complex networks , 2001, ArXiv.
[20] A. Barabasi,et al. Lethality and centrality in protein networks , 2001, Nature.
[21] I. Jolliffe. Principal Component Analysis , 2002 .
[22] S. Low,et al. The "robust yet fragile" nature of the Internet. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[23] John Scott. What is social network analysis , 2010 .
[24] Anirban Banerjee,et al. Graph spectra as a systematic tool in computational biology , 2007, Discret. Appl. Math..
[25] Frank Dudbridge,et al. The Use of Edge-Betweenness Clustering to Investigate Biological Function in Protein Interaction Networks , 2005, BMC Bioinformatics.
[26] B. Palsson,et al. Metabolic Flux Balancing: Basic Concepts, Scientific and Practical Use , 1994, Bio/Technology.
[27] Michael A. Langston,et al. Threshold selection in gene co-expression networks using spectral graph theory techniques , 2009, BMC Bioinformatics.
[28] D. Ingber,et al. High-Betweenness Proteins in the Yeast Protein Interaction Network , 2005, Journal of biomedicine & biotechnology.
[29] Joshua L. Payne,et al. The influence of assortativity on the robustness of signal-integration logic in gene regulatory networks. , 2012, Journal of theoretical biology.
[30] S. Schuster,et al. Metabolic network structure determines key aspects of functionality and regulation , 2002, Nature.