Protein conformations, interactions, and H/D exchange.
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[1] D. Naumann,et al. Thermally induced hydrogen exchange processes in small proteins as seen by FTIR spectroscopy , 1996, Proteins.
[2] R. Angeletti,et al. Substrate binding and conformational changes of Clostridium glutamicum diaminopimelate dehydrogenase revealed by hydrogen/deuterium exchange and electrospray mass spectrometry , 1998, Protein science : a publication of the Protein Society.
[3] S. Guan,et al. Higher-order structure and dynamics of FK506-binding protein probed by backbone amide hydrogen/deuterium exchange and electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry , 1997 .
[4] A. Waring,et al. Conformational mapping of a viral fusion peptide in structure‐promoting solvents using circular dichroism and electrospray mass spectrometry , 1998, Proteins.
[5] R. Hodges,et al. Peptide models of helical hydrophobic transmembrane segments of membrane proteins. 1. Studies of the conformation, intrabilayer orientation, and amide hydrogen exchangeability of Ac-K2-(LA)12-K2-amide. , 1995, Biochemistry.
[6] J M Scholtz,et al. Hydrogen exchange techniques. , 1995, Methods in molecular biology.
[7] C. Woodward,et al. Hydrogen exchange and the dynamic structure of proteins , 1982, Molecular and Cellular Biochemistry.
[8] Francis M. Wampler,et al. Coexisting stable conformations of gaseous protein ions. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[9] Derek J. Wilson,et al. Kinetic unfolding mechanism of the inducible nitric oxide synthase oxygenase domain determined by time-resolved electrospray mass spectrometry. , 2005, Biochemistry.
[10] C. G. Edmonds,et al. Tandem mass spectrometry of very large molecules. 2. Dissociation of multiply charged proline-containing proteins from electrospray ionization. , 1993, Analytical chemistry.
[11] D. J. Reed,et al. Alkylation of Escherichia coli thioredoxin by S-(2-chloroethyl)glutathione and identification of the adduct on the active site cysteine-32 by mass spectrometry. , 1995, Chemical research in toxicology.
[12] C. G. Edmonds,et al. Collisionally activated dissociation and tandem mass spectrometry of intact hemoglobin beta-chain variant proteins with electrospray ionization. , 1993, Biological mass spectrometry.
[13] J. R. Rogero,et al. Protein hydrogen exchange studied by the fragment separation method. , 1985, Analytical biochemistry.
[14] M. Jarrold,et al. PROTEIN STRUCTURE IN VACUO : GAS-PHASE CONFORMATIONS OF BPTI AND CYTOCHROME C , 1997 .
[15] D. J. Douglas,et al. Unfolding of proteins monitored by electrospray ionization mass spectrometry: a comparison of positive and negative ion modes , 1998, Journal of the American Society for Mass Spectrometry.
[16] M. Deinzer,et al. Mass Spectrometric Approaches Using Electrospray Ionization Charge States and Hydrogen-Deuterium Exchange for Determining Protein Structures and Their Conformational Changes* , 2004, Molecular & Cellular Proteomics.
[17] S W Englander,et al. Structural description of acid-denatured cytochrome c by hydrogen exchange and 2D NMR. , 1990, Biochemistry.
[18] C. Woodward,et al. Studies of hydrogen exchange in proteins. 3. The effects of the chymotrypsinogen-alpha chymotrypsin conversion on hydrogen exchange kinetics. , 1970, The Journal of biological chemistry.
[19] C. Robinson,et al. Detection of the Intact GroEL Chaperonin Assembly by Mass Spectrometry , 1999 .
[20] Richard D. Smith,et al. New mass spectrometric methods for the study of noncovalent associations of biopolymers , 1997 .
[21] B. Collings,et al. Collision cross sections of myoglobin and cytochrome c ions with Ne, Ar, and Kr , 1997 .
[22] M. Deinzer,et al. Dynamics and ligand-induced solvent accessibility changes in human retinoid X receptor homodimer determined by hydrogen deuterium exchange and mass spectrometry. , 2004, Biochemistry.
[23] J. Enberg,et al. Studies of hydrogen exchange in proteins. II. The reversible thermal unfolding of chymotrypsinogen A as studied by exchange kinetics. , 1969, The Journal of biological chemistry.
[24] L. Nilsson,et al. On the pH dependence of amide proton exchange rates in proteins. , 1995, Biophysical journal.
[25] B. Sykes,et al. Fourier transform ion cyclotron resonance mass spectrometric detection of small Ca2+-induced conformational changes in the regulatory domain of human cardiac troponin C , 1999, Journal of the American Society for Mass Spectrometry.
[26] D. Smith,et al. Identification of unfolding domains in large proteins by their unfolding rates. , 1998, Biochemistry.
[27] J. Mandell,et al. Identification of protein-protein interfaces by decreased amide proton solvent accessibility. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[28] A. Mauk,et al. Structural changes in cytochrome c upon hydrogen-deuterium exchange. , 1993, Biochemistry.
[29] M. Mann,et al. Electrospray ionization for mass spectrometry of large biomolecules. , 1989, Science.
[30] F. McLafferty,et al. Activated ion electron capture dissociation for mass spectral sequencing of larger (42 kDa) proteins. , 2000, Analytical chemistry.
[31] H. Roder. Structural characterization of protein folding intermediates by proton magnetic resonance and hydrogen exchange. , 1989, Methods in enzymology.
[32] A. D. Robertson,et al. Microsecond to minute dynamics revealed by EX1-type hydrogen exchange at nearly every backbone hydrogen bond in a native protein. , 2000, Journal of molecular biology.
[33] Qian Yi,et al. Direct evidence for a two‐state protein unfolding transition from hydrogen‐deuterium exchange, mass spectrometry, and NMR , 1996, Protein science : a publication of the Protein Society.
[34] F W McLafferty,et al. Collisional activation of large multiply charged ions using Fourier transform mass spectrometry. , 1994, Analytical chemistry.
[35] D. J. Douglas,et al. Cytochrome c folding kinetics studied by time-resolved electrospray ionization mass spectrometry. , 1997, Biochemistry.
[36] M. Karas,et al. Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons. , 1988, Analytical chemistry.
[37] Roman A. Zubarev,et al. Electron Capture Dissociation of Gaseous Multiply-Charged Proteins Is Favored at Disulfide Bonds and Other Sites of High Hydrogen Atom Affinity , 1999 .
[38] A. Heck,et al. Detection of intact megaDalton protein assemblies of vanillyl‐alcohol oxidase by mass spectrometry , 2008, Protein science : a publication of the Protein Society.
[39] R. Orlando,et al. Fragmentation studies of peptides: the formation of y ions. , 1992, Rapid communications in mass spectrometry : RCM.
[40] D. J. Reed,et al. Site-specific amide hydrogen/deuterium exchange in E. coli thioredoxins measured by electrospray ionization mass spectrometry. , 2001, Journal of the American Chemical Society.
[41] C. Fenselau,et al. Stability of secondary structural elements in a solvent‐free environment: the α helix , 1997 .
[42] V. Katta,et al. Hydrogen/Deuterium Exchange Electrospray Ionization Mass Spectrometry: A Method for Probing Protein Conformational Changes in Solution , 1993 .
[43] M. Deinzer,et al. Thermal denaturation of Escherichia coli thioredoxin studied by hydrogen/deuterium exchange and electrospray ionization mass spectrometry: monitoring a two-state protein unfolding transition. , 1999, Biochemistry.
[44] A. Li,et al. Stability of secondary structural elements in a solvent‐free environment. II: The β‐pleated sheets , 1998, Proteins.
[45] Clare Woodward,et al. Hydrogen exchange rates and protein folding , 1994 .
[46] C M Dobson,et al. Hydrogen exchange properties of proteins in native and denatured states monitored by mass spectrometry and NMR , 1997, Protein science : a publication of the Protein Society.
[47] K. Dill,et al. From Levinthal to pathways to funnels , 1997, Nature Structural Biology.
[48] J. Hajdu,et al. Electrospray time-of-flight mass spectrometry of the intact MS2 virus capsid , 2000 .
[49] D. J. Douglas,et al. Acid-induced denaturation of myoglobin studied by time-resolved electrospray ionization mass spectrometry. , 1997, Biochemistry.
[50] Brian T. Chait,et al. Probing conformational changes in proteins by mass spectrometry , 1990 .
[51] D. Schriemer,et al. Hydrogen/deuterium exchange mass spectrometry of actin in various biochemical contexts. , 2003, Journal of molecular biology.
[52] D. J. Reed,et al. Conformational changes in chemically modified Escherichia coli thioredoxin monitored by H/D exchange and electrospray ionization mass spectrometry , 2002, Protein science : a publication of the Protein Society.
[53] Xueheng Cheng,et al. Characterization of cytochrome c variants with high-resolution FTICR mass spectrometry: correlation of fragmentation and structure. , 1995, Analytical chemistry.
[54] Yawen Bai,et al. Primary structure effects on peptide group hydrogen exchange , 1993, Biochemistry.
[55] F. Guerlesquin,et al. New conformational properties induced by the replacement of Tyr‐64 in Desulfovibrio vulgaris Hildenborough ferricytochrome c 553 using isotopic exchanges monitored by mass spectrometry , 1996, FEBS letters.
[56] D. W. Bolen,et al. Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants. , 1988, Biochemistry.
[57] D. J. Douglas,et al. Equilibrium unfolding of proteins monitored by electrospray ionization mass spectrometry: distinguishing two-state from multi-state transitions. , 1998, Rapid communications in mass spectrometry : RCM.
[58] D. Smith,et al. Hydrogen exchange demonstrates three domains in aldolase unfold sequentially. , 1999, Journal of molecular biology.
[59] D. Clemmer,et al. Anhydrous protein ions. , 1999, Chemical reviews.
[60] D. Smith,et al. Thermal-induced unfolding domains in aldolase identified by amide hydrogen exchange and mass spectrometry. , 1996, Protein science : a publication of the Protein Society.
[61] Zhongqi Zhang,et al. Probing the non-covalent structure of proteins by amide hydrogen exchange and mass spectrometry. , 1997, Journal of mass spectrometry : JMS.
[62] F. McLafferty,et al. Gas-phase folding and unfolding of cytochrome c cations. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[63] C. G. Edmonds,et al. Effect of reducing disulfide-containing proteins on electrospray ionization mass spectra. , 1990, Analytical chemistry.
[64] R S Johnson,et al. Mass spectrometric measurement of changes in protein hydrogen exchange rates that result from point mutations , 1996, Journal of the American Society for Mass Spectrometry.
[65] F W McLafferty,et al. Two-dimensional mass spectrometry of biomolecules at the subfemtomole level. , 1998, Current opinion in chemical biology.
[66] M. Gross,et al. Electrospray ionization mass spectrometry and hydrogen/deuterium exchange for probing the interaction of calmodulin with calcium , 1999, Journal of the American Society for Mass Spectrometry.
[68] V. Katta,et al. Conformational changes in proteins probed by hydrogen-exchange electrospray-ionization mass spectrometry. , 1991, Rapid communications in mass spectrometry : RCM.
[69] J. V. Iribarne,et al. On the evaporation of small ions from charged droplets , 1976 .
[70] Zhongqi Zhang,et al. A universal algorithm for fast and automated charge state deconvolution of electrospray mass-to-charge ratio spectra , 1998, Journal of the American Society for Mass Spectrometry.
[71] C M Dobson,et al. Kinetic consequences of the removal of a disulfide bridge on the folding of hen lysozyme. , 1994, Biochemistry.
[72] L. Blanchard,et al. Study of the new stability properties induced by amino acid replacement of tyrosine 64 in cytochrome C553 from Desulfovibrio vulgaris Hildenborough using electrospray ionization mass spectrometry. , 1996, Biochemical and biophysical research communications.
[73] M. Deinzer,et al. Hydrogen/deuterium exchange and mass spectrometric analysis of a protein containing multiple disulfide bonds: Solution structure of recombinant macrophage colony stimulating factor‐beta (rhM‐CSFβ) , 2002 .
[74] C. Dobson,et al. Investigation of protein folding by mass spectrometry , 1996, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[75] G. Tollin,et al. Probing the Influence of Mutations on the Stability of a Ferredoxin by Mass Spectrometry , 1997, Journal of protein chemistry.
[76] S. Eyles,et al. Protein conformational stability probed by Fourier transform ion cyclotron resonance mass spectrometry , 2000 .
[77] K. Dill,et al. Protein folding in the landscape perspective: Chevron plots and non‐arrhenius kinetics , 1998, Proteins.
[78] D. J. Douglas,et al. Acid-induced unfolding of cytochrome c at different methanol concentrations: electrospray ionization mass spectrometry specifically monitors changes in the tertiary structure. , 1997, Biochemistry.
[79] J. Killian,et al. Factors affecting gas-phase deuterium scrambling in peptide ions and their implications for protein structure determination. , 2002, Journal of the American Chemical Society.
[80] M. Glocker,et al. Electrospray Mass Spectrometry of Biomacromolecular Complexes with Noncovalent Interactions—New Analytical Perspectives for Supramolecular Chemistry and Molecular Recognition Processes , 1996 .
[81] R. C. Mobley,et al. Molecular Beams of Macroions , 1968 .
[82] T. Creighton. Proteins: Structures and Molecular Properties , 1986 .
[83] R. Cotter,et al. Gas phase hydrogen/deuterium exchange reactions of peptide ions in a quadrupole ion trap mass spectrometer , 1997, Proteins.
[84] L Mayne,et al. Mechanisms and uses of hydrogen exchange. , 1996, Current opinion in structural biology.
[85] D. Marshak,et al. TECHNIQUES IN PROTEIN CHEMISTRY VII , 1996 .
[86] C. Dobson,et al. DETECTION OF A MONOMERIC INTERMEDIATE ASSOCIATED WITH DIMERIZATION OF PROTEIN HU BY MASS SPECTROMETRY , 1998 .
[87] Alan G. Marshall,et al. Protein Molecular Mass to 1 Da by 13C, 15N Double-Depletion and FT-ICR Mass Spectrometry , 1997 .
[88] C. Dobson,et al. Probing the Nature of Noncovalent Interactions by Mass Spectrometry. A Study of Protein−CoA Ligand Binding and Assembly , 1996 .
[89] C. Woodward. Advances in protein hydrogen exchange by mass spectrometry , 1999 .
[90] C. Dobson,et al. Detection of transient protein folding populations by mass spectrometry. , 1993, Science.
[91] M. Deinzer,et al. Structural comparison of recombinant human macrophage colony stimulating factor β and a partially reduced derivative using hydrogen deuterium exchange and electrospray ionization mass spectrometry , 2001, Protein science : a publication of the Protein Society.
[92] David E. Clemmer,et al. NAKED PROTEIN CONFORMATIONS : CYTOCHROME C IN THE GAS PHASE , 1995 .
[93] A. Dobó,et al. A chemometric approach to detection and characterization of multiple protein conformers in solution using electrospray ionization mass spectrometry. , 2003, Analytical chemistry.
[94] A G Marshall,et al. Conformational and dynamic changes of Yersinia protein tyrosine phosphatase induced by ligand binding and active site mutation and revealed by H/D exchange and electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. , 1998, Biochemistry.
[95] L Mayne,et al. Primary structure effects on peptide group hydrogen exchange. , 1972, Proteins.
[96] Zhongqi Zhang,et al. Probing noncovalent structural features of proteins by mass spectrometry , 1994 .
[97] J. Mandell,et al. Solvent accessibility of the thrombin-thrombomodulin interface. , 2001, Journal of molecular biology.
[98] J. Clarke,et al. Hydrogen exchange and protein folding. , 1998, Current opinion in structural biology.
[99] A. J. Frank,et al. Kinetic intermediates in the folding of gaseous protein ions characterized by electron capture dissociation mass spectrometry. , 2001, Journal of the American Chemical Society.
[100] A. Rosenberg,et al. Studies of hydrogen exchange in proteins. I. The exchange kinetics of bovine carbonic anhydrase. , 1968, The Journal of biological chemistry.
[101] J. Chapman. Protein and peptide analysis by mass spectrometry , 1996 .
[102] Fred W. McLafferty,et al. GASEOUS CONFORMATIONAL STRUCTURES OF CYTOCHROME C , 1998 .
[103] A. Hvidt,et al. Hydrogen exchange in proteins. , 1966, Advances in protein chemistry.
[104] David L. Smith,et al. Downsizing improves sensitivity 100-fold for hydrogen exchange-mass spectrometry. , 2003, Analytical biochemistry.
[105] A. Dobó,et al. Is there hydrogen scrambling in the gas phase? Energetic and structural determinants of proton mobility within protein ions. , 2004, Journal of the American Chemical Society.
[106] H. Dyson,et al. Comparison of the hydrogen-exchange behavior of reduced and oxidized Escherichia coli thioredoxin. , 1995, Biochemistry.
[107] A. D. Robertson,et al. Defining protein ensembles with native-state NH exchange: kinetics of interconversion and cooperative units from combined NMR and MS analysis. , 1999, Journal of molecular biology.
[108] S. Valentine,et al. H/D Exchange Levels of Shape-Resolved Cytochrome c Conformers in the Gas Phase , 1997 .
[109] P. Roepstorff,et al. Mapping Temperature-induced Conformational Changes in the Escherichia coli Heat Shock Transcription Factor σ32 by Amide Hydrogen Exchange* , 2003, Journal of Biological Chemistry.
[110] Richard S. Johnson,et al. Mass spectrometric measurement of protein amide hydrogen exchange rates of apo‐ and holo‐myoglobin , 1994, Protein science : a publication of the Protein Society.
[111] T. Logan,et al. Human recombinant [C22A] FK506‐binding protein amide hydrogen exchange rates from mass spectrometry match and extend those from NMR , 1997, Protein science : a publication of the Protein Society.
[112] W. Gmeiner,et al. Identification and localization of slow, natural, cooperative unfolding in the hematopoietic cell kinase SH3 domain by amide hydrogen exchange and mass spectrometry. , 1997, Biochemistry.
[113] S. Eyles,et al. Methods to study protein dynamics and folding by mass spectrometry. , 2004, Methods.
[114] T. Creighton,et al. Protein Folding , 1992 .
[115] B. Shirley,et al. Protein Stability and Folding: Theory and Practice , 1995 .
[116] C. Dobson,et al. Conformation of GroEL-bound α-lactalbumin probed by mass spectrometry , 1994, Nature.
[117] Michael L Gross,et al. Probing Ca2+-induced conformational changes in porcine calmodulin by H/D exchange and ESI-MS: effect of cations and ionic strength. , 2003, Biochemistry.
[118] N. Ahn,et al. Deuterium exchange mass spectrometry as a probe of protein kinase activation. Analysis of wild-type and constitutively active mutants of MAP kinase kinase-1. , 1998, Biochemistry.
[119] K. Walsh,et al. Proton mobility within electrosprayed peptide ions , 1995 .
[120] C. G. Edmonds,et al. Solvent-induced conformational changes of polypeptides probed by electrospray-ionization mass spectrometry. , 1991, Rapid communications in mass spectrometry : RCM.
[121] E. Goormaghtigh,et al. Tertiary stability of native and methionine-80 modified cytochrome c detected by proton-deuterium exchange using on-line Fourier transform infrared spectroscopy. , 1995, Biochemistry.
[122] C. Fenselau,et al. Hydrogen/deuterium exchange of mass-selected peptide ions with ND3 in a tandem sector mass spectrometer , 1992 .
[123] C M Dobson,et al. Detection and selective dissociation of intact ribosomes in a mass spectrometer. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[124] Fang Wang,et al. Hydrogen exchange/electrospray ionization mass spectrometry studies of substrate and inhibitor binding and conformational changes of Escherichia coli dihydrodipicolinate reductase. , 1997, Biochemistry.
[125] M. Deinzer,et al. Conformational properties of the A-state of cytochrome c studied by hydrogen/deuterium exchange and electrospray mass spectrometry. , 1997, Analytical biochemistry.
[126] C. Robinson,et al. Protein folding and interactions revealed by mass spectrometry. , 1999, Current opinion in chemical biology.
[127] S. Englander,et al. Measurement and calibration of peptide group hydrogen-deuterium exchange by ultraviolet spectrophotometry. , 1979, Analytical biochemistry.
[128] R. Li,et al. The hydrogen exchange core and protein folding , 1999, Protein science : a publication of the Protein Society.
[129] S. Marqusee,et al. Touring the landscapes: partially folded proteins examined by hydrogen exchange. , 1997, Structure.
[130] C. Post,et al. Amide hydrogen exchange determined by mass spectrometry: application to rabbit muscle aldolase. , 1996, Biochemistry.
[131] N. Kallenbach,et al. Hydrogen exchange and structural dynamics of proteins and nucleic acids , 1983, Quarterly Reviews of Biophysics.
[132] B. Chait,et al. Heat-induced conformational changes in proteins studied by electrospray ionization mass spectrometry. , 1993, Analytical chemistry.
[133] Smith Dl. Local structure and dynamics in proteins characterized by hydrogen exchange and mass spectrometry. , 1998 .
[134] D. J. Reed,et al. Intramolecular interactions in chemically modified Escherichia coli thioredoxin monitored by hydrogen/deuterium exchange and electrospray ionization mass spectrometry. , 2001, Biochemistry.
[135] M. Gross,et al. Modeling data from titration, amide H/D exchange, and mass spectrometry to obtain protein-ligand binding constants , 2004, Journal of the American Society for Mass Spectrometry.
[136] Hai Pan,et al. Hydrogen Exchange-Mass Spectrometry , 2002, Molecular & Cellular Proteomics.
[137] The Mass Spectrometry of Helical Unfolding in Peptides , 1994, Journal of the American Society for Mass Spectrometry.
[138] A. Heck,et al. Probing metal ion binding and conformational properties of the colicin E9 endonuclease by electrospray ionization time‐of‐flight mass spectrometry , 2002, Protein science : a publication of the Protein Society.
[139] K. Resing,et al. Modeling deuterium exchange behavior of ERK2 using pepsin mapping to probe secondary structure , 1999, Journal of the American Society for Mass Spectrometry.
[140] Zhongqi Zhang,et al. Determination of amide hydrogen exchange by mass spectrometry: A new tool for protein structure elucidation , 1993, Protein science : a publication of the Protein Society.
[141] H. Dyson,et al. NMR characterization of a single-cysteine mutant of Escherichia coli thioredoxin and a covalent thioredoxin-peptide complex. , 1998, European journal of biochemistry.
[142] C. Dobson,et al. Protein subunit interactions and structural integrity of amyloidogenic transthyretins: evidence from electrospray mass spectrometry. , 1998, Journal of molecular biology.
[143] R. Armstrong,et al. Insights into enzyme structure and dynamics elucidated by amide H/D exchange mass spectrometry. , 2005, Archives of biochemistry and biophysics.
[144] A. Wand,et al. Two-dimensional 1H NMR studies of cytochrome c: hydrogen exchange in the N-terminal helix. , 1986, Biochemistry.
[145] Zhongqi Zhang,et al. Comparison of continuous and pulsed labeling amide hydrogen exchange/mass spectrometry for studies of protein dynamics , 1999, Journal of the American Society for Mass Spectrometry.
[146] A HVIDT,et al. Exchange of hydrogen atoms in insulin with deuterium atoms in aqueous solutions. , 1954, Biochimica et biophysica acta.
[147] M. Gross,et al. Quantification of protein-ligand interactions by mass spectrometry, titration, and H/D exchange: PLIMSTEX. , 2003, Journal of the American Chemical Society.