Evolutionary Convergence and Nitrogen Metabolism in Blattabacterium strain Bge, Primary Endosymbiont of the Cockroach Blattella germanica

Bacterial endosymbionts of insects play a central role in upgrading the diet of their hosts. In certain cases, such as aphids and tsetse flies, endosymbionts complement the metabolic capacity of hosts living on nutrient-deficient diets, while the bacteria harbored by omnivorous carpenter ants are involved in nitrogen recycling. In this study, we describe the genome sequence and inferred metabolism of Blattabacterium strain Bge, the primary Flavobacteria endosymbiont of the omnivorous German cockroach Blattella germanica. Through comparative genomics with other insect endosymbionts and free-living Flavobacteria we reveal that Blattabacterium strain Bge shares the same distribution of functional gene categories only with Blochmannia strains, the primary Gamma-Proteobacteria endosymbiont of carpenter ants. This is a remarkable example of evolutionary convergence during the symbiotic process, involving very distant phylogenetic bacterial taxa within hosts feeding on similar diets. Despite this similarity, different nitrogen economy strategies have emerged in each case. Both bacterial endosymbionts code for urease but display different metabolic functions: Blochmannia strains produce ammonia from dietary urea and then use it as a source of nitrogen, whereas Blattabacterium strain Bge codes for the complete urea cycle that, in combination with urease, produces ammonia as an end product. Not only does the cockroach endosymbiont play an essential role in nutrient supply to the host, but also in the catabolic use of amino acids and nitrogen excretion, as strongly suggested by the stoichiometric analysis of the inferred metabolic network. Here, we explain the metabolic reasons underlying the enigmatic return of cockroaches to the ancestral ammonotelic state.

[1]  Antje Chang,et al.  BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009 , 2008, Nucleic Acids Res..

[2]  A. Moya,et al.  Blattabacteria, the endosymbionts of cockroaches, have small genome sizes and high genome copy numbers. , 2008, Environmental microbiology.

[3]  A. Moya,et al.  The Striking Case of Tryptophan Provision in the Cedar Aphid Cinara cedri , 2008, Journal of bacteriology.

[4]  A. Moya,et al.  Learning how to live together: genomic insights into prokaryote–animal symbioses , 2008, Nature Reviews Genetics.

[5]  M. O'Donnell Insect Excretory Mechanisms , 2008 .

[6]  N. Moran,et al.  Parallel genomic evolution and metabolic interdependence in an ancient symbiosis , 2007, Proceedings of the National Academy of Sciences.

[7]  Martin J. Mueller,et al.  Nutritional upgrading for omnivorous carpenter ants by the endosymbiont Blochmannia , 2007, BMC Biology.

[8]  Gerard Talavera,et al.  Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. , 2007, Systematic biology.

[9]  Jean-François Gibrat,et al.  Complete genome sequence of the fish pathogen Flavobacterium psychrophilum , 2007, Nature Biotechnology.

[10]  P. Richardson,et al.  Genome Sequence of the Cellulolytic Gliding Bacterium Cytophaga hutchinsonii , 2007, Applied and Environmental Microbiology.

[11]  R. Amann,et al.  Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter. , 2006, Environmental microbiology.

[12]  Hajime Ishikawa,et al.  The 160-Kilobase Genome of the Bacterial Endosymbiont Carsonella , 2006, Science.

[13]  Andrés Moya,et al.  A Small Microbial Genome: The End of a Long Symbiotic Relationship? , 2006, Science.

[14]  R. Gross,et al.  Relevance of the Endosymbiosis of Blochmannia floridanus and Carpenter Ants at Different Stages of the Life Cycle of the Host , 2006, Applied and Environmental Microbiology.

[15]  Phat L Tran,et al.  Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters , 2006, PLoS biology.

[16]  Lars J Jensen,et al.  Origin of replication in circular prokaryotic chromosomes. , 2006, Environmental microbiology.

[17]  R. Hausinger,et al.  Biosynthesis of Active Bacillus subtilis Urease in the Absence of Known Urease Accessory Proteins , 2005, Journal of bacteriology.

[18]  P. Degnan,et al.  Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects. , 2005, Genome research.

[19]  Thomas Dandekar,et al.  Metabolic Interdependence of Obligate Intracellular Bacteria and Their Insect Hosts , 2004, Microbiology and Molecular Biology Reviews.

[20]  Dean Laslett,et al.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. , 2004, Nucleic acids research.

[21]  O. Gascuel,et al.  A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.

[22]  Jürgen Gadau,et al.  The genome sequence of Blochmannia floridanus: Comparative analysis of reduced genomes , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[23]  C. Bandi,et al.  Evidence for cocladogenesis between diverse dictyopteran lineages and their intracellular endosymbionts. , 2003, Molecular biology and evolution.

[24]  S. Kambhampati,et al.  Phylogenetic analysis of Blattabacterium, endosymbiotic bacteria from the wood roach, Cryptocercus (Blattodea: Cryptocercidae), including a description of three new species. , 2003, Molecular phylogenetics and evolution.

[25]  S. Andersson,et al.  BRUCE: a program for the detection of transfer-messenger RNA genes in nucleotide sequences. , 2002, Nucleic acids research.

[26]  M. A. Rosenblad,et al.  Prediction of signal recognition particle RNA genes. , 2002, Nucleic acids research.

[27]  K. Katoh,et al.  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. , 2002, Nucleic acids research.

[28]  Kathryn F. Beal,et al.  The Staden package, 1998. , 2000, Methods in molecular biology.

[29]  S. Salzberg,et al.  Improved microbial gene identification with GLIMMER. , 1999, Nucleic acids research.

[30]  Juan Carlos Nuño,et al.  METATOOL: for studying metabolic networks , 1999, Bioinform..

[31]  David Posada,et al.  MODELTEST: testing the model of DNA substitution , 1998, Bioinform..

[32]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[33]  T. Kogoma Stable DNA replication: interplay between DNA replication, homologous recombination, and transcription. , 1997, Microbiology and molecular biology reviews : MMBR.

[34]  Akiyasu C. Yoshizawa,et al.  KAAS: an automatic genome annotation and pathway reconstruction server , 2007, Environmental health perspectives.

[35]  C. Bandi,et al.  The establishment of intracellular symbiosis in an ancestor of cockroaches and termites , 1995, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[36]  R. Fani,et al.  Flavobacteria as intracellular symbionts in cockroaches , 1994, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[37]  Lynn Margulis,et al.  Symbiosis in Cell Evolution: Microbial Communities in the Archean and Proterozoic Eons , 1992 .

[38]  R. White,et al.  Maternal and paternal nitrogen investment in Blattella germanica (L.) (Dictyoptera; Blattellidae). , 1992, The Journal of experimental biology.

[39]  Norman R. Pace,et al.  Ribonuclease P: function and variation. , 1990, The Journal of biological chemistry.

[40]  D. Cochran Nitrogen Excretion in Cockroaches , 1985 .

[41]  D. Cochran,et al.  Physiological processes related to nitrogen excretion in cockroaches , 1982 .

[42]  L. Margulis Symbiosis in cell evolution: Life and its environment on the early earth , 1981 .

[43]  D. Mullins,et al.  Paternal investment of urates in cockroaches , 1980, Nature.

[44]  W. Wieser A Glutaminase in the Body Wall of Terrestrial Isopods , 1972, Nature.

[45]  D. Cochran,et al.  Nitrogen Excretion in Cockroaches: Uric Acid Is Not a Major Product , 1972, Science.

[46]  M. Brooks Comments on the classification of intracellular symbiotes of cockroaches and a description of the species , 1970 .

[47]  R. Richterich Clinical chemistry : theory and practice , 1969 .

[48]  B. A. Kilby,et al.  Uric acid metabolism by symbiotic bacteria from the fat body of Periplaneta americana. , 1967, Comparative biochemistry and physiology.

[49]  P. Buchner Endosymbiosis of Animals with Plant Microorganisms , 1965 .

[50]  L. Pierre Uricase Activity of Isolated Symbionts and the Aposymbiotic Fat Body of a Cockroach , 1964, Nature.

[51]  D. Ludwig,et al.  Purification and Activities of Purine Enzymes from Various Tissues of the American Cockroach Periplaneta americana Linnaeus. (Orthoptera: Blattidae) , 1963 .

[52]  S. M. Henry,et al.  Metabolism of the Sulphur Amino-Acids and of Sulphate in Blattella germanica , 1961, Nature.

[53]  D. Ludwig,et al.  Uricase, Guanase, and Xanthine Oxidase from the Fat Body of the Cockroach, Leucophaea Maderae , 1959 .

[54]  J. Needham CONTRIBUTIONS OF CHEMICAL PHYSIOLOGY TO THE PROBLEM OF REVERSIBILITY IN EVOLUTION , 1938 .