Transcription of inflammatory genes: long noncoding RNA and beyond.
暂无分享,去创建一个
[1] C. Glass,et al. Roles of lineage-determining transcription factors in establishing open chromatin: lessons from high-throughput studies. , 2012, Current topics in microbiology and immunology.
[2] J. Rinn,et al. Modular regulatory principles of large non-coding RNAs , 2012, Nature.
[3] Kathleen A. Kennedy,et al. Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4 , 2006, Nature.
[4] Lisa E. Gralinski,et al. Unique Signatures of Long Noncoding RNA Expression in Response to Virus Infection and Altered Innate Immune Signaling , 2010, mBio.
[5] Nir Friedman,et al. A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals. , 2012, Molecular cell.
[6] S. Tilghman,et al. The structure and expression of a novel gene activated in early mouse embryogenesis. , 1988, The EMBO journal.
[7] S. Smale,et al. Selective and antagonistic functions of SWI/SNF and Mi-2beta nucleosome remodeling complexes during an inflammatory response. , 2006, Genes & development.
[8] S. Dhanasekaran,et al. The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex , 2013, Nature Genetics.
[9] F. Borràs,et al. Transcription factors that regulate monocyte/macrophage differentiation , 1998, Journal of leukocyte biology.
[10] Eugenia G. Giannopoulou,et al. Synergistic activation of inflammatory cytokine genes by interferon-γ-induced chromatin remodeling and toll-like receptor signaling. , 2013, Immunity.
[11] K. Struhl. Fundamentally Different Logic of Gene Regulation in Eukaryotes and Prokaryotes , 1999, Cell.
[12] Gioacchino Natoli,et al. Dynamic changes in histone H3 Lys 9 methylation occurring at tightly regulated inducible inflammatory genes. , 2002, Genes & development.
[13] Danny Reinberg,et al. Elongation by RNA polymerase II: the short and long of it. , 2004, Genes & development.
[14] E. Kurt-Jones,et al. Pattern Recognition Receptors and the Innate Immune Response to Viral Infection , 2011, Viruses.
[15] S. Saccani,et al. Two Waves of Nuclear Factor κb Recruitment to Target Promoters , 2001, The Journal of experimental medicine.
[16] J. Ragoussis,et al. A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers , 2010, PLoS biology.
[17] V. Heath,et al. C/EBPalpha deficiency results in hyperproliferation of hematopoietic progenitor cells and disrupts macrophage development in vitro and in vivo. , 2004, Blood.
[18] J. Sznajder,et al. Suppression of inflammation and acute lung injury by the transcription factor Miz1 via repression of C/EBP-δ , 2013, Nature Immunology.
[19] Xuetao Cao,et al. The STAT3-Binding Long Noncoding RNA lnc-DC Controls Human Dendritic Cell Differentiation , 2014, Science.
[20] Ananda L Roy,et al. Regulation of primary response genes. , 2011, Molecular cell.
[21] Masahiro Yamamoto,et al. Pathogen Recognition Receptors: Ligands and Signaling Pathways by Toll-Like Receptors , 2013, International reviews of immunology.
[22] G. Natoli,et al. The Histone H3 Lysine-27 Demethylase Jmjd3 Links Inflammation to Inhibition of Polycomb-Mediated Gene Silencing , 2007, Cell.
[23] Ruslan Medzhitov,et al. Transcriptional control of the inflammatory response , 2009, Nature Reviews Immunology.
[24] Xiurong Wu,et al. A Potential Suppressive Effect of Natural Antisense IL-1β RNA on Lipopolysaccharide-Induced IL-1β Expression , 2013, The Journal of Immunology.
[25] C. Rice,et al. Suppression of inflammation by a synthetic histone mimic , 2010, Nature.
[26] Michael T. McManus,et al. Pervasive Transcription of the Human Genome Produces Thousands of Previously Unidentified Long Intergenic Noncoding RNAs , 2013, PLoS genetics.
[27] P. Magistretti,et al. CCAAT/Enhancer-binding Protein Family Members Recruit the Coactivator CREB-binding Protein and Trigger Its Phosphorylation* , 2003, Journal of Biological Chemistry.
[28] C. Allis,et al. Translating the Histone Code , 2001, Science.
[29] G. Natoli,et al. Latent Enhancers Activated by Stimulation in Differentiated Cells , 2013, Cell.
[30] M. Aringer,et al. Innate immune processes in lupus erythematosus. , 2013, Clinical immunology.
[31] William Stafford Noble,et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project , 2007, Nature.
[32] B. Alberts,et al. Steroid receptors: elements for modulation of eukaryotic transcription. , 1976, Annual review of biochemistry.
[33] Michael F. Lin,et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals , 2009, Nature.
[34] J. Rinn,et al. Ab initio reconstruction of transcriptomes of pluripotent and lineage committed cells reveals gene structures of thousands of lincRNAs , 2010, Nature Biotechnology.
[35] S. Smale. Selective Transcription in Response to an Inflammatory Stimulus , 2010, Cell.
[36] A. Bird,et al. DNA methylation landscapes: provocative insights from epigenomics , 2008, Nature Reviews Genetics.
[37] Zhonghan Li,et al. The long noncoding RNA THRIL regulates TNFα expression through its interaction with hnRNPL , 2013, Proceedings of the National Academy of Sciences.
[38] Ping Zhu,et al. Histone H2A monoubiquitination represses transcription by inhibiting RNA polymerase II transcriptional elongation. , 2008, Molecular cell.
[39] S. Akira,et al. Pathogen Recognition by the Innate Immune System , 2011, International reviews of immunology.
[40] Dong Wook Kim,et al. An injected bacterial effector targets chromatin access for transcription factor NF-κB to alter transcription of host genes involved in immune responses , 2007, Nature Immunology.
[41] K. Moore,et al. Macrophages in atherosclerosis: a dynamic balance , 2013, Nature Reviews Immunology.
[42] J. Keefer,et al. C/EBPα:AP-1 leucine zipper heterodimers bind novel DNA elements, activate the PU.1 promoter and direct monocyte lineage commitment more potently than C/EBPα homodimers or AP-1 , 2007, Oncogene.
[43] K. Ozato,et al. BRD4 Coordinates Recruitment of Pause Release Factor P-TEFb and the Pausing Complex NELF/DSIF To Regulate Transcription Elongation of Interferon-Stimulated Genes , 2013, Molecular and Cellular Biology.
[44] J. Keefer,et al. C/EBP alpha:AP-1 leucine zipper heterodimers bind novel DNA elements, activate the PU.1 promoter and direct monocyte lineage commitment more potently than C/EBP alpha homodimers or AP-1. , 2008, Oncogene.
[45] Howard Y. Chang,et al. Genome regulation by long noncoding RNAs. , 2012, Annual review of biochemistry.
[46] E. Dees,et al. The product of the H19 gene may function as an RNA , 1990, Molecular and cellular biology.
[47] Cyrus Martin,et al. The diverse functions of histone lysine methylation , 2005, Nature Reviews Molecular Cell Biology.
[48] T. Mikkelsen,et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells , 2007, Nature.
[49] N. Perrimon,et al. Control of proinflammatory gene programs by regulated trimethylation and demethylation of histone H4K20. , 2012, Molecular cell.
[50] Lana X. Garmire,et al. A Global Clustering Algorithm to Identify Long Intergenic Non-Coding RNA - with Applications in Mouse Macrophages , 2011, PloS one.
[51] B. Emerson,et al. p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes , 2014, eLife.
[52] Alistair G. Rust,et al. A FOXO3/IRF7 gene regulatory circuit limits inflammatory sequelae of antiviral responses , 2012, Nature.
[53] A. Hoffmann,et al. A Unifying Model for the Selective Regulation of Inducible Transcription by CpG Islands and Nucleosome Remodeling , 2009, Cell.
[54] I. Goodhead,et al. Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes , 2014, Nature Communications.
[55] Simmie L. Foster,et al. Gene-specific control of the TLR-induced inflammatory response. , 2009, Clinical immunology.
[56] C. Glass,et al. Cooperative NCoR/SMRT interactions establish a corepressor-based strategy for integration of inflammatory and anti-inflammatory signaling pathways. , 2009, Genes & development.
[57] S. Smale. Transcriptional regulation in the innate immune system. , 2012, Current opinion in immunology.
[58] Howard Y. Chang,et al. The NeST Long ncRNA Controls Microbial Susceptibility and Epigenetic Activation of the Interferon-γ Locus , 2013, Cell.
[59] Daniel R. Caffrey,et al. A Long Noncoding RNA Mediates Both Activation and Repression of Immune Response Genes , 2013, Science.
[60] V. Heath,et al. C/EBPα deficiency results in hyperproliferation of hematopoietic progenitor cells and disrupts macrophage development in vitro and in vivo , 2004 .
[61] C. Kao,et al. Cyclic GMP-AMP synthase is activated by double-stranded DNA-induced oligomerization. , 2013, Immunity.
[62] Zachary D. Smith,et al. Unbiased Reconstruction of a Mammalian Transcriptional Network Mediating Pathogen Responses , 2009 .
[63] B. Williams,et al. Mapping and quantifying mammalian transcriptomes by RNA-Seq , 2008, Nature Methods.
[64] Simmie L. Foster,et al. Gene-specific control of inflammation by TLR-induced chromatin modifications , 2007, Nature.
[65] Michael Rehli,et al. Dynamic epigenetic enhancer signatures reveal key transcription factors associated with monocytic differentiation states. , 2012, Blood.
[66] T. Aune,et al. Cutting Edge: Influence of Tmevpg1, a Long Intergenic Noncoding RNA, on the Expression of Ifng by Th1 Cells , 2012, The Journal of Immunology.
[67] J. Ragoussis,et al. Identification and characterization of enhancers controlling the inflammatory gene expression program in macrophages. , 2010, Immunity.
[68] Scott B. Dewell,et al. Histone H3 lysine 9 di-methylation as an epigenetic signature of the interferon response , 2012, The Journal of experimental medicine.
[69] J. Rinn,et al. Ab initio reconstruction of transcriptomes of pluripotent and lineage committed cells reveals gene structures of thousands of lincRNAs , 2010, Nature biotechnology.
[70] S. Rastan,et al. Requirement for Xist in X chromosome inactivation , 1996, Nature.
[71] H. Cedar,et al. Linking DNA methylation and histone modification: patterns and paradigms , 2009, Nature Reviews Genetics.
[72] R. Medzhitov,et al. Control of Inducible Gene Expression by Signal-Dependent Transcriptional Elongation , 2009, Cell.