Denoising functional magnetic resonance imaging time-series using anisotropic spatial averaging

Abstract We propose a novel iterative scheme for adaptive smoothing of functional MR images. The method estimates a signal model at every voxel in the time-series, which is subsequently used in determining the weights of the smoothing kernel. The method does not require any information about the test hypothesis and is well-suited as a preprocessing step for both hypothesis-driven and data-driven analysis techniques. We demonstrate the performance of the proposed method by applying it to preprocess both simulated and real fMRI data. The method is found to effectively suppress the noise while preserving the shapes of the active brain regions.