A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives
暂无分享,去创建一个
D. Pot | R. Bacilieri | Y. Vigouroux | J. Tregear | S. Glémin | J. David | A. Barnaud | N. Scarcelli | C. Billot | B. Nabholz | F. Sabot | N. Yahiaoui | S. Santoni | J. Péros | M. Ruiz | G. Sarah | N. Chantret | C. Sauvage | M. Boccara | L. Sauné | J. Labouisse | J. Pham | M. Ardisson | Felix Homa | B. Khadari | S. Pointet | Sandy Contreras | C. Jourda | H. Chair
[1] Matthew W. Hahn,et al. Three New Genome Assemblies Support a Rapid Radiation in Musa acuminata (Wild Banana) , 2018, bioRxiv.
[2] Hideki Hirakawa,et al. Draft Genome Sequence of Eggplant (Solanum melongena L.): the Representative Solanum Species Indigenous to the Old World , 2014, DNA research : an international journal for rapid publication of reports on genes and genomes.
[3] Philippe Bardou,et al. jvenn: an interactive Venn diagram viewer , 2014, BMC Bioinformatics.
[4] C. Deng,et al. Comparative transcriptome analysis of eggplant (Solanum melongena L.) and turkey berry (Solanum torvum Sw.): phylogenomics and disease resistance analysis , 2014, BMC Genomics.
[5] A. Krogh,et al. Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization , 2014, Proceedings of the National Academy of Sciences.
[6] S. Cannon,et al. Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications , 2014, PloS one.
[7] Yeisoo Yu,et al. Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species , 2014, Nature Genetics.
[8] H. Ellegren. Genome sequencing and population genomics in non-model organisms. , 2014, Trends in ecology & evolution.
[9] Jeffrey P. Mower,et al. Comparative analyses of two Geraniaceae transcriptomes using next-generation sequencing , 2013, BMC Plant Biology.
[10] Sharon R Grossman,et al. Detecting natural selection in genomic data. , 2013, Annual review of genetics.
[11] J. Harrow,et al. Assessment of transcript reconstruction methods for RNA-seq , 2013, Nature Methods.
[12] Anil Kumar Singh,et al. Comprehensive transcriptomic study on horse gram (Macrotyloma uniflorum): De novo assembly, functional characterization and comparative analysis in relation to drought stress , 2013, BMC Genomics.
[13] Colin N. Dewey,et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis , 2013, Nature Protocols.
[14] J. Rodriguez,et al. De Novo Assembly and Functional Annotation of the Olive (Olea europaea) Transcriptome , 2013, DNA research : an international journal for rapid publication of reports on genes and genomes.
[15] Zhengwei Zhu,et al. CD-HIT: accelerated for clustering the next-generation sequencing data , 2012, Bioinform..
[16] Rachel S. Meyer,et al. Patterns and processes in crop domestication: an historical review and quantitative analysis of 203 global food crops. , 2012, The New phytologist.
[17] V. Ranwez,et al. Reference‐free transcriptome assembly in non‐model animals from next‐generation sequencing data , 2012, Molecular ecology resources.
[18] Xun Xu,et al. Comparative population genomics of maize domestication and improvement , 2012, Nature Genetics.
[19] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[20] Aaron R. Quinlan,et al. BIOINFORMATICS APPLICATIONS NOTE , 2022 .
[21] H. Fukuoka,et al. Accumulation, functional annotation, and comparative analysis of expressed sequence tags in eggplant (Solanum melongena L.), the third pole of the genus Solanum species after tomato and potato. , 2010, Gene.
[22] Thomas Bataillon,et al. A comparative view of the evolution of grasses under domestication. , 2009, The New phytologist.
[23] Steven J. M. Jones,et al. Abyss: a Parallel Assembler for Short Read Sequence Data Material Supplemental Open Access , 2022 .
[24] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[25] Mihaela M. Martis,et al. The Sorghum bicolor genome and the diversification of grasses , 2009, Nature.
[26] M. Robles,et al. University of Birmingham High throughput functional annotation and data mining with the Blast2GO suite , 2022 .
[27] J. Poulain,et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla , 2007, Nature.
[28] B. Gaut,et al. Plant domestication, a unique opportunity to identify the genetic basis of adaptation , 2007, Proceedings of the National Academy of Sciences.
[29] J. Tregear,et al. Somaclonal variation in micropropagated oil palm. Characterization of two novel genes with enhanced expression in epigenetically abnormal cell lines and in response to auxin. , 2006, Tree physiology.
[30] Ewan Birney,et al. Automated generation of heuristics for biological sequence comparison , 2005, BMC Bioinformatics.
[31] Mark L. Blaxter,et al. prot4EST: Translating Expressed Sequence Tags from neglected genomes , 2004, BMC Bioinformatics.
[32] X. Huang,et al. CAP3: A DNA sequence assembly program. , 1999, Genome research.