The vertically-stratified resistomes in mangrove sediments was driven by the bacterial diversity.
暂无分享,去创建一个
Zhili He | Q. Yan | Shengwei Liu | Yun Tian | Songfeng Liu | Cheng Wang | Yisheng Peng | Longfei Shu | Ruiwen Hu | Yongjie Wu | Xueqin Yang | Hang Gu | Jijuan Ding | Qiang He | Jiaxiong Zeng | Fei Liu | Yu Pan
[1] Zhili He,et al. Vertically stratified methane, nitrogen and sulphur cycling and coupling mechanisms in mangrove sediment microbiomes , 2023, Microbiome.
[2] Meng Li,et al. Deep sequencing reveals comprehensive insight into the prevalence, mobility, and hosts of antibiotic resistance genes in mangrove ecosystems. , 2023, Journal of environmental management.
[3] Zhili He,et al. PCycDB: a comprehensive and accurate database for fast analysis of phosphorus cycling genes , 2022, Microbiome.
[4] X. Yi,et al. Globally distributed mining-impacted environments are underexplored hotspots of multidrug resistance genes , 2022, The ISME Journal.
[5] M. Gillings,et al. Assessment of global health risk of antibiotic resistance genes , 2022, Nature Communications.
[6] Charmaine Ng,et al. Population-based variations of a core resistome revealed by urban sewage metagenome surveillance. , 2022, Environment international.
[7] D. Khasa,et al. Anthropogenic activities and geographic locations regulate microbial diversity, community assembly and species sorting in Canadian and Indian freshwater lakes. , 2022, The Science of the total environment.
[8] Seung Chul Shin,et al. Characterization of antimicrobial resistance genes and virulence factor genes in an Arctic permafrost region revealed by metagenomics. , 2021, Environmental pollution.
[9] Chen Wang,et al. Evidence for Long-Term Anthropogenic Pollution: The Hadal Trench as a Depository and Indicator for Dissemination of Antibiotic Resistance Genes. , 2021, Environmental science & technology.
[10] Zhili He,et al. Depth-dependent variability of biological nitrogen fixation and diazotrophic communities in mangrove sediments , 2021, Microbiome.
[11] J. W. Turner,et al. Bioplastic accumulates antibiotic and metal resistance genes in coastal marine sediments. , 2021, Environmental pollution.
[12] Siyuan Ma,et al. Diverse and abundant antibiotic resistance genes in mangrove area and their relationship with bacterial communities - A study in Hainan Island, China. , 2021, Environmental pollution.
[13] W. Hanage,et al. Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes , 2021, Proceedings of the National Academy of Sciences.
[14] Michael L. Whittaker,et al. Genome-resolved metagenomics reveals site-specific diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems , 2021, Nature Microbiology.
[15] S. Wang,et al. Antibiotics in marine aquaculture farms surrounding Laizhou Bay, Bohai Sea: Distribution characteristics considering various culture modes and organism species. , 2020, The Science of the total environment.
[16] M. Imchen,et al. Metagenomic insights into the antibiotic resistome of mangrove sediments and their association to socioeconomic status. , 2020, Environmental pollution.
[17] Xiaowei Zhang,et al. Human activities' fingerprint on multitrophic biodiversity and ecosystem functions across a major river catchment in China , 2020, Global change biology.
[18] Zhong Hu,et al. Diversity and distribution of antibiotics and antibiotic resistance genes in seven national mangrove nature reserves, South China , 2020 .
[19] M. Imchen,et al. Shotgun metagenomics reveals heterogeneous prokaryotic community and a wide array of antibiotic resistance genes in mangrove sediments. , 2020, FEMS microbiology ecology.
[20] Q. Wen,et al. Impacts of Cu and Zn on the performance, microbial community dynamics and resistance genes variations during mesophilic and thermophilic anaerobic digestion of swine manure. , 2020, Bioresource technology.
[21] B. Baker,et al. Diversity, ecology and evolution of Archaea , 2020, Nature Microbiology.
[22] R. Zuo,et al. Characterization and source identification of antibiotic resistance genes in the sediments of an interconnected river-lake system. , 2020, Environment international.
[23] Geoffrey L. Winsor,et al. CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database , 2019, Nucleic Acids Res..
[24] J. Sparks,et al. Non‐native mangroves support carbon storage, sediment carbon burial, and accretion of coastal ecosystems , 2019, Global change biology.
[25] Jennifer Lu,et al. Improved metagenomic analysis with Kraken 2 , 2019, Genome Biology.
[26] N. Fierer,et al. High proportions of bacteria and archaea across most biomes remain uncultured , 2019, The ISME Journal.
[27] J. Peñuelas,et al. Loss of soil microbial diversity exacerbates spread of antibiotic resistance , 2019, Soil Ecology Letters.
[28] Zhang Ke-li,et al. Estimating long-term erosion and sedimentation rate on farmland using magnetic susceptibility in northeast China , 2019, Soil and Tillage Research.
[29] Z. Zeng,et al. Metagenomic insights into the distribution of antibiotic resistome between the gut-associated environments and the pristine environments. , 2019, Environment international.
[30] M. Bhattacharyya,et al. Anthropogenic influence shapes the distribution of antibiotic resistant bacteria (ARB) in the sediment of Sundarban estuary in India. , 2019, The Science of the total environment.
[31] H. Bürgmann,et al. Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes , 2018, The ISME Journal.
[32] J. Bengtsson-Palme,et al. Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements , 2018, Nature Communications.
[33] Tong Zhang,et al. Tracking antibiotic resistance gene pollution from different sources using machine-learning classification , 2018, Microbiome.
[34] Mingqing Pan,et al. Occurrence of antibiotics and antibiotic resistance genes in soils from wastewater irrigation areas in the Pearl River Delta region, southern China. , 2018, The Science of the total environment.
[35] E. Garner,et al. DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data , 2018, Microbiome.
[36] Tong Zhang,et al. Catalogue of antibiotic resistome and host-tracking in drinking water deciphered by a large scale survey , 2017, Microbiome.
[37] Charmaine Ng,et al. Characterization of Metagenomes in Urban Aquatic Compartments Reveals High Prevalence of Clinically Relevant Antibiotic Resistance Genes in Wastewaters , 2017, Front. Microbiol..
[38] Qingxiang Yang,et al. Molecular characterization of antibiotic resistance in cultivable multidrug-resistant bacteria from livestock manure. , 2017, Environmental pollution.
[39] R. E. Collins,et al. Effect of the environment on horizontal gene transfer between bacteria and archaea , 2017, PeerJ.
[40] Geet Duggal,et al. Salmon: fast and bias-aware quantification of transcript expression using dual-phase inference , 2017, Nature Methods.
[41] Tong Zhang,et al. Co-occurrence of antibiotic and metal resistance genes revealed in complete genome collection , 2016, The ISME Journal.
[42] M. Hess,et al. Anthropogenic impact on mangrove sediments triggers differential responses in the heavy metals and antibiotic resistomes of microbial communities. , 2016, Environmental pollution.
[43] Hing-Fung Ting,et al. MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices. , 2016, Methods.
[44] M. V. D. van der Heijden,et al. An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability. , 2016, Trends in ecology & evolution.
[45] Brian C. Thomas,et al. A new view of the tree of life , 2016, Nature Microbiology.
[46] Luke S P Moore,et al. Antimicrobials: access and sustainable eff ectiveness 2 Understanding the mechanisms and drivers of antimicrobial resistance , 2015 .
[47] Bing Li,et al. Metagenomic Assembly Reveals Hosts of Antibiotic Resistance Genes and the Shared Resistome in Pig, Chicken, and Human Feces. , 2016, Environmental science & technology.
[48] Erik Kristiansson,et al. Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential , 2015, BMC Genomics.
[49] Ming Liu,et al. Effects of long-term manure applications on the occurrence of antibiotics and antibiotic resistance genes (ARGs) in paddy soils: Evidence from four field experiments in south of China , 2015 .
[50] Teresa M. Coque,et al. What is a resistance gene? Ranking risk in resistomes , 2014, Nature Reviews Microbiology.
[51] Chao Xie,et al. Fast and sensitive protein alignment using DIAMOND , 2014, Nature Methods.
[52] Y. Tor,et al. Antibiotics and Bacterial Resistance in the 21st Century , 2014, Perspectives in medicinal chemistry.
[53] Molly K. Gibson,et al. Bacterial phylogeny structures soil resistomes across habitats , 2014, Nature.
[54] R. De la Iglesia,et al. Heavy metal concentration in mangrove surface sediments from the north-west coast of South America. , 2014, Marine pollution bulletin.
[55] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[56] M. V. D. van der Heijden,et al. Soil biodiversity and soil community composition determine ecosystem multifunctionality , 2014, Proceedings of the National Academy of Sciences.
[57] D. Alongi. Carbon cycling and storage in mangrove forests. , 2014, Annual review of marine science.
[58] Erik Kristiansson,et al. BacMet: antibacterial biocide and metal resistance genes database , 2013, Nucleic Acids Res..
[59] M. Popowska,et al. Broad-host-range IncP-1 plasmids and their resistance potential , 2013, Front. Microbiol..
[60] H. Thatoi,et al. Biodiversity and biotechnological potential of microorganisms from mangrove ecosystems: a review , 2013, Annals of Microbiology.
[61] Timothy A. Johnson,et al. Diverse and abundant antibiotic resistance genes in Chinese swine farms , 2013, Proceedings of the National Academy of Sciences.
[62] P. Alvarez,et al. Tetracycline resistance gene maintenance under varying bacterial growth rate, substrate and oxygen availability, and tetracycline concentration. , 2013, Environmental science & technology.
[63] Mazdak Arabi,et al. Correlation between upstream human activities and riverine antibiotic resistance genes. , 2012, Environmental science & technology.
[64] A. Teske,et al. Microbial diversity and stratification of South Pacific abyssal marine sediments. , 2011, Environmental microbiology.
[65] Xing-li Sun,et al. Antibiotic resistance of bacteria isolated from shrimp hatcheries and cultural ponds on Donghai Island, China. , 2011, Marine pollution bulletin.
[66] S. Schuster,et al. Integrative analysis of environmental sequences using MEGAN4. , 2011, Genome research.
[67] B. Cui,et al. Assessment of heavy metal pollution in wetland soils from the young and old reclaimed regions in the Pearl River Estuary, South China. , 2011, Environmental pollution.
[68] Miriam L. Land,et al. Trace: Tennessee Research and Creative Exchange Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification Recommended Citation Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification , 2022 .
[69] A. Sapkota,et al. Aquaculture practices and potential human health risks: current knowledge and future priorities. , 2008, Environment international.
[70] S. Allison,et al. Resistance, resilience, and redundancy in microbial communities , 2008, Proceedings of the National Academy of Sciences.
[71] Y. Topalova,et al. Survival of genetically marked Escherichia coli O157:H7 in soil as affected by soil microbial community shifts , 2007, The ISME Journal.
[72] C. Stamm,et al. Depth distribution of sulfonamide antibiotics in pore water of an undisturbed loamy grassland soil. , 2007, Journal of environmental quality.
[73] Didier Mazel,et al. Integrons: agents of bacterial evolution , 2006, Nature Reviews Microbiology.
[74] Ramunas Stepanauskas,et al. Co-selection of antibiotic and metal resistance. , 2006, Trends in microbiology.
[75] Hector M Guzman,et al. An assessment of metal contamination in mangrove sediments and leaves from Punta Mala Bay, Pacific Panama. , 2005, Marine pollution bulletin.
[76] T. Glenn,et al. Elevated microbial tolerance to metals and antibiotics in metal-contaminated industrial environments. , 2005, Environmental science & technology.
[77] J. Tiedje,et al. DNA recovery from soils of diverse composition , 1996, Applied and environmental microbiology.