Parameter Estimation for Signal Transduction Networks from Experimental Time Series Using Picard Iteration
暂无分享,去创建一个
Rolf Findeisen | Heinrich J. Huber | Friedrich von Haeseler | Nadine Rudolph | R. Findeisen | H. Huber | F. V. Haeseler | Nadine Rudolph
[1] Takaho A. Endo,et al. A new protein containing an SH2 domain that inhibits JAK kinases , 1997, Nature.
[2] Thierry Bastogne,et al. The Experimental Side of Parameter Estimation , 2016 .
[3] Frank Allgöwer,et al. Observability based parameter identifiability for biochemical reaction networks , 2008, 2008 American Control Conference.
[4] S. Shen-Orr,et al. Network motifs: simple building blocks of complex networks. , 2002, Science.
[5] J. Scheller,et al. Interleukin‐6 Trans‐Signalling in Chronic Inflammation and Cancer , 2006, Scandinavian journal of immunology.
[6] Jochen H M Prehn,et al. Computational Analysis of AMPK-Mediated Neuroprotection Suggests Acute Excitotoxic Bioenergetics and Glucose Dynamics Are Regulated by a Minimal Set of Critical Reactions , 2016, PloS one.
[7] P. Otter. Dynamic structural systems under indirect observation: identifiability and estimation aspects from a system theoretic perspective , 1986 .
[8] Richard H. Middleton,et al. Equilibria and stability of a class of positive feedback loops , 2014, Journal of mathematical biology.
[9] S. Shen-Orr,et al. Networks Network Motifs : Simple Building Blocks of Complex , 2002 .
[10] J. Geoffrey Chase,et al. Characterisation of the iterative integral parameter identification method , 2011, Medical & Biological Engineering & Computing.
[11] Mustafa Khammash,et al. Parameter Estimation and Model Selection in Computational Biology , 2010, PLoS Comput. Biol..
[12] E. Vrscay,et al. CORRIGENDUM: Solving inverse problems for ordinary differential equations using the Picard contraction mapping , 1999 .
[13] E. Voit,et al. Pathway Analysis and Optimization in Metabolic Engineering , 2002 .
[14] H. Leeb,et al. An exact inversion method for the determination of spin–orbit potentials from scattering data , 1998 .
[15] Martin Mönnigmann,et al. Model-driven experimental analysis of the function of SHP-2 in IL-6-induced Jak/STAT signaling. , 2012, Molecular bioSystems.
[16] V. W. Noonburg,et al. Ordinary Differential Equations , 2014 .
[17] J. Banga,et al. Structural Identifiability of Systems Biology Models: A Critical Comparison of Methods , 2011, PloS one.
[18] I. Chou,et al. Recent developments in parameter estimation and structure identification of biochemical and genomic systems. , 2009, Mathematical biosciences.
[19] Robert D. Tanner. Estimating Kinetic Rate Constants Using Orthogonal Polynomials and Picard's Iteration Method , 1972 .
[20] Philipp Rumschinski,et al. Set-base dynamical parameter estimation and model invalidation for biochemical reaction networks , 2010, BMC Systems Biology.
[21] M. Savageau. Biochemical systems analysis. II. The steady-state solutions for an n-pool system using a power-law approximation. , 1969, Journal of theoretical biology.
[22] J. Schaber,et al. Model-based inference of biochemical parameters and dynamic properties of microbial signal transduction networks. , 2011, Current opinion in biotechnology.
[23] E. Passante,et al. Signal transduction analysis of the NLRP3-inflammasome pathway after cellular damage and its paracrine regulation. , 2017, Journal of theoretical biology.
[24] P. Heinrich,et al. Principles of interleukin (IL)-6-type cytokine signalling and its regulation. , 2003, The Biochemical journal.
[25] Carmen G. Moles,et al. Parameter estimation in biochemical pathways: a comparison of global optimization methods. , 2003, Genome research.
[26] Yang Liu,et al. Parameter estimation of dynamic biological network models using integrated fluxes , 2014, BMC Systems Biology.
[27] Marcello Farina,et al. Results Towards Identifiability Properties of Biochemical Reaction Networks , 2006, Proceedings of the 45th IEEE Conference on Decision and Control.
[28] M. Savageau. Biochemical systems analysis. II. The steady-state solutions for an n-pool system using a power-law approximation. , 1969, Journal of theoretical biology.
[29] Philipp Rumschinski,et al. Methodology article Set-base dynamical parameter estimation and model invalidation for biochemical reaction networks , 2010 .
[30] W. Marquardt,et al. Incremental Identification of Reaction Systems - A Comparison between Rate-based and Extent-based Approaches , 2012 .
[31] Eberhard O. Voit,et al. Biochemical Systems Theory: A Review , 2013 .