CtaM Is Required for Menaquinol Oxidase aa3 Function in Staphylococcus aureus

ABSTRACT Staphylococcus aureus is the leading cause of skin and soft tissue infections, bacteremia, osteomyelitis, and endocarditis in the developed world. The ability of S. aureus to cause substantial disease in distinct host environments is supported by a flexible metabolism that allows this pathogen to overcome challenges unique to each host organ. One feature of staphylococcal metabolic flexibility is a branched aerobic respiratory chain composed of multiple terminal oxidases. Whereas previous biochemical and spectroscopic studies reported the presence of three different respiratory oxygen reductases (o type, bd type, and aa3 type), the genome contains genes encoding only two respiratory oxygen reductases, cydAB and qoxABCD. Previous investigation showed that cydAB and qoxABCD are required to colonize specific host organs, the murine heart and liver, respectively. This work seeks to clarify the relationship between the genetic studies showing the unique roles of the cydAB and qoxABCD in virulence and the respiratory reductases reported in the literature. We establish that QoxABCD is an aa3-type menaquinol oxidase but that this enzyme is promiscuous in that it can assemble as a bo3-type menaquinol oxidase. However, the bo3 form of QoxABCD restricts the carbon sources that can support the growth of S. aureus. In addition, QoxABCD function is supported by a previously uncharacterized protein, which we have named CtaM, that is conserved in aerobically respiring Firmicutes. In total, these studies establish the heme A biosynthesis pathway in S. aureus, determine that QoxABCD is a type aa3 menaquinol oxidase, and reveal CtaM as a new protein required for type aa3 menaquinol oxidase function in multiple bacterial genera. IMPORTANCE Staphylococcus aureus relies upon the function of two terminal oxidases, CydAB and QoxABCD, to aerobically respire and colonize distinct host tissues. Previous biochemical studies support the conclusion that a third terminal oxidase is also present. We establish the components of the S. aureus electron transport chain by determining the heme cofactors that interact with QoxABCD. This insight explains previous observations by revealing that QoxABCD can utilize different heme cofactors and confirms that the electron transport chain of S. aureus is comprised of two terminal menaquinol oxidases. In addition, a newly identified protein, CtaM, is found to be required for the function of QoxABCD. These results provide a more complete assessment of the molecular mechanisms that support staphylococcal respiration. Staphylococcus aureus relies upon the function of two terminal oxidases, CydAB and QoxABCD, to aerobically respire and colonize distinct host tissues. Previous biochemical studies support the conclusion that a third terminal oxidase is also present. We establish the components of the S. aureus electron transport chain by determining the heme cofactors that interact with QoxABCD. This insight explains previous observations by revealing that QoxABCD can utilize different heme cofactors and confirms that the electron transport chain of S. aureus is comprised of two terminal menaquinol oxidases. In addition, a newly identified protein, CtaM, is found to be required for the function of QoxABCD. These results provide a more complete assessment of the molecular mechanisms that support staphylococcal respiration.

[1]  C. von Wachenfeldt,et al.  Terminal Oxidases of Bacillus subtilisStrain 168: One Quinol Oxidase, Cytochromeaa3 or Cytochrome bd, Is Required for Aerobic Growth , 2000, Journal of bacteriology.

[2]  A. Malm,et al.  Energy conservation in aerobically grown Staphylococcus aureus. , 1999, Research in microbiology.

[3]  Peer Bork,et al.  Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy , 2011, Nucleic Acids Res..

[4]  B. Snel,et al.  Toward Automatic Reconstruction of a Highly Resolved Tree of Life , 2006, Science.

[5]  Eric P. Skaar,et al.  Two Heme-Dependent Terminal Oxidases Power Staphylococcus aureus Organ-Specific Colonization of the Vertebrate Host , 2013, mBio.

[6]  D. White,et al.  Membrane Lipid Changes During Formation of a Functional Electron Transport System in Staphylococcus aureus , 1967, Journal of bacteriology.

[7]  Anisah W. Ghoorah,et al.  jMOTU and Taxonerator: Turning DNA Barcode Sequences into Annotated Operational Taxonomic Units , 2011, PloS one.

[8]  K. C. Strasters,et al.  CARBOHYDRATE METABOLISM OF STAPHYLOCOCCUS AUREUS. , 1963, Journal of general microbiology.

[9]  Mark Blaxter,et al.  Defining operational taxonomic units using DNA barcode data , 2005, Philosophical Transactions of the Royal Society B: Biological Sciences.

[10]  E. Duthie,et al.  Staphylococcal coagulase; mode of action and antigenicity. , 1952, Journal of general microbiology.

[11]  Eric P. Skaar,et al.  An Iron-Regulated Autolysin Remodels the Cell Wall To Facilitate Heme Acquisition in Staphylococcus lugdunensis , 2015, Infection and Immunity.

[12]  V. A. Eremin,et al.  [Variability of Staphylococcus aureus membranes depending on the growth phase of the culture]. , 1987, Mikrobiologicheskii zhurnal.

[13]  H. H. Ramsey ENDOGENOUS RESPIRATION OF STAPHYLOCOCCUS AUREUS , 1962, Journal of bacteriology.

[14]  A. Richardson,et al.  Glycolytic Dependency of High-Level Nitric Oxide Resistance and Virulence in Staphylococcus aureus , 2015, mBio.

[15]  L. Thurlow,et al.  Functional modularity of the arginine catabolic mobile element contributes to the success of USA300 methicillin-resistant Staphylococcus aureus. , 2013, Cell host & microbe.

[16]  Fangfang Xia,et al.  The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) , 2013, Nucleic Acids Res..

[17]  U. Meyer [Heme biosynthesis]. , 1975, Schweizerische medizinische Wochenschrift.

[18]  Kenneth W. Bayles,et al.  A Genetic Resource for Rapid and Comprehensive Phenotype Screening of Nonessential Staphylococcus aureus Genes , 2013, mBio.

[19]  H. Taber,et al.  ELECTRON TRANSPORT IN STAPHYLOCOCCI. PROPERTIES OF A PARTICLE PREPARATION FROM EXPONENTIAL PHASE STAPHYLOCOCCUS AUREUS. , 1964, Archives of biochemistry and biophysics.

[20]  L. Hederstedt,et al.  Bacillus subtilis CtaA and CtaB function in haem A biosynthesis , 1993, Molecular microbiology.

[21]  R. Gennis,et al.  Characterization of the type 2 NADH:menaquinone oxidoreductases from Staphylococcus aureus and the bactericidal action of phenothiazines. , 2014, Biochimica et biophysica acta.

[22]  S. Foster,et al.  CtaA of Staphylococcus aureus Is Required for Starvation Survival, Recovery, and Cytochrome Biosynthesis , 1999, Journal of bacteriology.

[23]  D. Lechardeur,et al.  Aerobic respiration metabolism in lactic acid bacteria and uses in biotechnology. , 2012, Annual review of food science and technology.

[24]  M. Contreras-Zentella,et al.  A Novel Double Heme Substitution Produces a Functionalbo3Variant of the Quinol Oxidaseaa3ofBacillus cereus: PURIFICATION AND PARTIAL CHARACTERIZATION , 2003 .

[25]  Chuan He,et al.  Golden Pigment Production and Virulence Gene Expression Are Affected by Metabolisms in Staphylococcus aureus , 2010, Journal of bacteriology.

[26]  V. Petrov,et al.  Branched respiratory chain in aerobically grown Staphylococcus aureus —oxidation of ethanol by cells and protoplasts , 2004, Archives of Microbiology.

[27]  Naryttza N. Diaz,et al.  The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes , 2005, Nucleic acids research.

[28]  H. Juan Small Colony Variants: a Pathogenic Form of Bacteria that Facilitates Persistent and Recurrent Infections , 2009 .

[29]  C. Rausch,et al.  Microevolution of Cytochrome bd Oxidase in Staphylococci and Its Implication in Resistance to Respiratory Toxins Released by Pseudomonas , 2006, Journal of Bacteriology.

[30]  P. Rangel,et al.  Haem O and a putative cytochrome bo in a mutant of Bacillus cereus impaired in the synthesis of haem A , 1997, Archives of Microbiology.

[31]  B. Barquera,et al.  The superfamily of heme-copper respiratory oxidases , 1994, Journal of bacteriology.

[32]  O. Schneewind,et al.  Allelic replacement in Staphylococcus aureus with inducible counter-selection. , 2006, Plasmid.

[33]  Renato J. Alves,et al.  The superfamily of heme-copper oxygen reductases: types and evolutionary considerations. , 2012, Biochimica et biophysica acta.

[34]  M. Verkhovsky,et al.  Oxygen as Acceptor. , 2009, EcoSal Plus.

[35]  G. Richardson The nutrition of Staphylococcus aureus. Necessity for uracil in anaerobic growth. , 1936, The Biochemical journal.

[36]  Maria L. Gennaro,et al.  Changes in energy metabolism of Mycobacterium tuberculosis in mouse lung and under in vitro conditions affecting aerobic respiration , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[37]  James Hemp,et al.  Diversity of the heme-copper superfamily in archaea: insights from genomics and structural modeling. , 2008, Results and problems in cell differentiation.

[38]  Y. Fujiwara,et al.  Haem O can replace haem A in the active site of cytochrome c oxidase from thermophilic bacterium PS3 , 1991, FEBS letters.

[39]  K. Morand,et al.  Novel prenylated hemes as cofactors of cytochrome oxidases. Archaea have modified hemes A and O. , 1994, The Journal of biological chemistry.

[40]  R. Gennis,et al.  The cytochrome bd respiratory oxygen reductases. , 2011, Biochimica et biophysica acta.

[41]  I. Zhulin,et al.  Terminal oxidases of Azoarcus sp. BH72, a strictly respiratory diazotroph , 1997, FEBS letters.

[42]  Roberta B Carey,et al.  Invasive methicillin-resistant Staphylococcus aureus infections in the United States. , 2007, JAMA.

[43]  A. Conde Staphylococcus aureus infections. , 1998, The New England journal of medicine.

[44]  S. Way,et al.  Impact of either Elevated or Decreased Levels of Cytochrome bd Expression on Shigella flexneri Virulence , 1999, Journal of bacteriology.