Determination of Basicity of Core X and Terminal Y Ligands (X, Y = S and Se) of Reduced, Oxidized, and Super-Oxidized Forms of [Fe4X4(YAd)4]2− (Ad = 1-Adamantyl) in Aqueous Solutions

A series of [Fe4X4(YAd)4]2− (X, Y = S, Se; Ad = 1-adamantyl) were prepared as a model of high potential iron–sulfur proteins. Hydrolysis of the clusters was effectively depressed in aqueous poly[2-(dimethylamino)hexanamide] (PDAH) solutions due to the enbedding effect in hydrophobic environment and/or inhibition of dissociation of the terminal ligand into the aqueous media. Cyclic voltammetry of those clusters in aqueous PDAH solutions showed pH-dependent redox potentials of not only the [Fe4X4]+/2+ but also the [Fe4X4]2+/3+ (X = S and Se) couples, resulting from redox-linked protonation reactions of three oxidation states of [Fe4X4(YAd)4]n− (n = 1—3). pKavalues of the reduced, oxidized, and super-oxidized forms of [Fe4X4(YAd)4]2− were determined by computer simulation of the pH dependent redox potentials. The basicity of the core X (X = S and Se) of three oxidation states of [Fe4X4(YAd)4]n− (n = 1, 2, 3) was stronger than the terminal YAd (Y = S and Se) ligands: in the case of the mono-protonated [Fe4X4(...

[1]  T. Yamane,et al.  Conformation Control of Peptides by Metal Ions. Coordination Conformation Correlation Observed in a Model for Cys-X-Y-Cys/M(2+) in Proteins. , 1997, Inorganic chemistry.

[2]  N. Ueyama,et al.  Association of Oxo-Molybdenum Dithiolene Complexes with a Multiamide Additive and Its Influence on the Ease of O-Atom Transfer. , 1997, Inorganic chemistry.

[3]  Yusuke Yamada,et al.  Cytochrome P-450 Model (Porphinato)(thiolato)iron(III) Complexes with Single and Double NH···S Hydrogen Bonds at the Thiolate Site , 1996 .

[4]  Yusuke Yamada,et al.  Structure and Properties of [Fe(4)S(4){2,6-bis(acylamino)benzenethiolato-S}(4)](2)(-) and [Fe(2)S(2){2,6-bis(acylamino)benzenethiolato-S}(4)](2)(-): Protection of the Fe-S Bond by Double NH.S Hydrogen Bonds. , 1996, Inorganic chemistry.

[5]  T. Yamane,et al.  Conformation Control of Model Peptides by Metal Ions. A New Type of Turn Structure Found in [(Boc-Cys-Pro-Leu-Cys-Gly-Ala)Hg] , 1996 .

[6]  I. Bertini,et al.  Individual Reduction Potentials of the Iron Ions in Fe(2)S(2) and High-Potential Fe(4)S(4) Ferredoxins. , 1996, Inorganic chemistry.

[7]  J. Cowan,et al.  Evaluation of Solvent Accessibility to the [Fe(4)S(4)] Binding Pocket in Native and Tyr19 Mutant High Potential Iron Proteins by (1)H-(15)N HMQC and (19)F NMR Experiments. , 1996, Inorganic chemistry.

[8]  I. Bertini,et al.  Rationalization of the reduction potentials within the series of the high potential iron-sulfur proteins , 1995 .

[9]  Takeshi Yamamura,et al.  Conformation Control of Model Peptides by Metal Ions. 1. Cys-X-Y-Cys and Linear Coordination , 1995 .

[10]  I. Bertini,et al.  Sequence-specific assignment of the 1H and 15N nuclear magnetic resonance spectra of the reduced recombinant high-potential iron-sulfur protein I from Ectothiorhodospira halophila. , 1994, European journal of biochemistry.

[11]  A. Warshel,et al.  Calculation of the redox potentials of iron-sulfur proteins: the 2-/3-couple of [Fe4S*4Cys4] clusters in Peptococcus aerogenes ferredoxin, Azotobacter vinelandii ferredoxin I, and Chromatium vinosum high-potential iron protein. , 1994, Biochemistry.

[12]  I. Rayment,et al.  Molecular structure of the oxidized high-potential iron-sulfur protein isolated from Ectothiorhodospira vacuolata. , 1994, Biochemistry.

[13]  S. Peng,et al.  Stabilization of superoxidized form of synthetic Fe4S4 cluster as the first model of high potential iron sulfur proteins in aqueous media , 1993 .

[14]  F. Capozzi,et al.  The iron-sulfur cluster in the oxidized high-potential iron protein from Ectothiorhodospira halophila , 1993 .

[15]  T. Okamura,et al.  Structure and properties of molybdenum(IV,V) arenethiolates with a neighboring amide group. Significant contribution of NH.cntdot..cntdot..cntdot.S hydrogen bond to the positive shift of redox potential of Mo(V)/Mo(IV) , 1992 .

[16]  J. Sanders-Loehr,et al.  The environment of Fe4S4 clusters in ferredoxins and high-potential iron proteins. New information from x-ray crystallography and resonance Raman spectroscopy , 1991 .

[17]  Toshio Tanaka,et al.  Redox-Linked Protonation of [Fe4X4(YR)4]2− (X,Y=S and Se; R=n-C12H25 and C6H4-p-t-Bu) in Aqueous Solutions , 1988 .

[18]  M. Moriya,et al.  Redox behaviors of [Fe4S4(SR)4]2- and [Mo2Fe6S8X3(SR)6]3- (R = C6H4-p-n-C8H17; X = SEt, OMe) in aqueous micellar solutions , 1986 .

[19]  J. Michl,et al.  DIMETHYLSILYLENE: TRISILANE AND A GEMINAL DIAZIDE AS NEW PHOTOCHEMICAL PRECURSORS. EVIDENCE FOR AN ABSORPTION MAXIMUM NEAR 450 NM , 1985 .

[20]  R. Frankel,et al.  Effects of secondary bonding interactions on the iron-sulfur cubane-type [Fe4S4]2+ core of ferredoxin site analogs: [Fe4S4(SC6H4-o-OH)4]2-, a distorted cubane-type cluster with one five-coordinate iron atom , 1983 .

[21]  P. Mascharak,et al.  Doubly bridged double cubanes containing MFe3S4 clusters (M = Mo, W). Synthesis, structure, and conversion to spin-quartet single clusters in solution , 1982 .

[22]  R. Frankel,et al.  Electron-transfer series of MoFe3S4 double-cubane clusters: electronic properties of components and the structure of [(C2H5)4N]5[Mo2Fe6S8(SC6H5)9] , 1982 .

[23]  H. Matsubara,et al.  Ferredoxin excreted from photosynthetic bacterium, Rhodospirillum rubrum: purification and properties. , 1981, Journal of biochemistry.

[24]  F. Ausubel,et al.  Nucleotide sequence of the gene coding for the nitrogenase iron protein from Klebsiella pneumoniae. , 1981, The Journal of biological chemistry.

[25]  J C Rabinowitz,et al.  Proteins containing 4Fe-4S clusters: an overview. , 1980, Annual review of biochemistry.

[26]  M. Ishimoto,et al.  Studies on nitrate reductase of Clostridium perfringens. II. Purification and some properties of ferredoxin. , 1979, Journal of biochemistry.

[27]  J. Berg,et al.  Selenium substitution in [Fe4S4(SR)4]2-: synthesis and comparative properties of [Fe4X4(YC6H5)4]2- (X, Y = sulfur, selenium) and the structure of [(CH3)4N]2[Fe4Se4(SC6H5)4] , 1978 .

[28]  M. Mevarech,et al.  Induction of a dissimilatory reduction pathway of nitrate in Halobacterium of the Dead Sea. A possible role for the 2 Fe-ferredoxin isolated from this organism. , 1978, Archives of biochemistry and biophysics.

[29]  R. G. Bartsch Purification of (4Fe-4S)1--2--ferredoxins (high-potential iron--sulfur proteins) from bacteria. , 1978, Methods in enzymology.

[30]  C. Carter New stereochemical analogies between iron-sulfur electron transport proteins. , 1977, The Journal of biological chemistry.

[31]  M. Haniu,et al.  The amino acid sequence of Clostridium pasteurianum iron protein, a component of nitrogenase. III. The NH2-terminal and COOH-terminal sequences, tryptic peptides of large cyanogen bromide peptides, and the complete sequence. , 1977, The Journal of biological chemistry.

[32]  J. Renaud,et al.  Synthetic analogues of the active sites of iron-sulfur proteins. 15. Comparative polarographic potentials of the [Fe4S4(SR)4]2 -- ,3 -- and clostridium pasteurianum ferredoxin redox couples. , 1977, Journal of the American Chemical Society.

[33]  J. Rabinowitz,et al.  Apparent oxidation-reduction potential of Clostridium acidi-urici ferredoxin. Effect of pH, ionic strength, and amino acid replacements. , 1976, The Journal of biological chemistry.

[34]  K. Watenpaugh,et al.  NH---S hydrogen bonds in Peptococcus aerogenes ferredoxin, Clostridium pasteurianum rubredoxin, and Chromatium high potential iron protein. , 1975, Proceedings of the National Academy of Sciences of the United States of America.

[35]  D. C. Yoch,et al.  Characterization of two soluble ferredoxins as distinct from bound iron-sulfur proteins in the photosynthetic bacterium Rhodospirillum rubrum. , 1975, The Journal of biological chemistry.

[36]  L. Bauer,et al.  Deoxidative substitution of pyridine N-oxides. XII. Revised structures of some tetrahydropyridines isolated from the reaction of pyridine N-oxides with mercaptans and acid anhydrides , 1975 .

[37]  L. Que,et al.  Synthetic analogs of the active sites of iron-sulfur proteins. IX. Formation and some electronic and reactivity properties of Fe4S4 Glycyl-L-cysteinylglycyl oligopeptide complexes obtained by ligand substitution reactions. , 1974, Journal of the American Chemical Society.

[38]  L. Que,et al.  Synthetic analogs of the active sites of iron-sulfur proteins. VI. Spectral and redox characteristics of the tetranuclear clusters (Fe4S4(SR)4).2-. , 1974, Journal of the American Chemical Society.

[39]  L. Que,et al.  Synthetic analogs of the active sites of iron-sulfur proteins. VII. Ligand substitution reactions of the tetranuclear clusters (Fe4S4(SR)4)2- and the structure of ((CH3)4N)2(Fe4S4(SC6H5)4). , 1974, Journal of the American Chemical Society.

[40]  G. Lang,et al.  Mössbauer spectroscopy of the nitrogenase proteins from Klebsiella pneumoniae. Structural assignments and mechanistic conclusions. , 1974, The Biochemical journal.

[41]  J. Ibers,et al.  Synthetic analogs of the active sites of iron-sulfur proteins. II. Synthesis and structure of the tetra(mercapto-m 3 -sulfido-iron) clusters, (Fe 4 S 4 (SR) 4 ) 2- . , 1973, Journal of the American Chemical Society.

[42]  K. Shanmugam,et al.  Ferredoxins in light- and dark-grown photosynthetic cells with special reference to Rhodospirillum rubrum. , 1972, Biochimica et biophysica acta.

[43]  L. Bauer,et al.  Carbon-sulfur cleavage of 1-adamantyl sulfides , 1971 .