A novel approach to activation detection in fMRI based on empirical mode decomposition.

This article presents a novel method for activation detection in task-related functional magnetic resonance imaging (fMRI) based on the Empirical Mode Decomposition (EMD) algorithm. The basic concept stems mainly from the idea that the EMD performs well in isolating the imbedded stimulus from the activated Blood Oxygen Level Dependent (BOLD) signal. The power of the proposed method was compared with the General Linear Model (GLM), spatial Independent Component Analysis (ICA) and Region Growing (RG) methods on simulated and real datasets. Experimental results suggest an almost identical performance for the proposed method compared with the standard approach of fMRI signal detection (the GLM), which indicates that it is to become a viable alternative to fMRI analysis.

[1]  Karl J. Friston,et al.  Analysis of fMRI Time-Series Revisited—Again , 1995, NeuroImage.

[2]  I Kanno,et al.  Statistical methods for detecting activated regions in functional MRI of the brain. , 1998, Magnetic resonance imaging.

[3]  Yingli Lu,et al.  Region growing method for the analysis of functional MRI data , 2003, NeuroImage.

[4]  L. K. Hansen,et al.  Generalizable Patterns in Neuroimaging: How Many Principal Components? , 1999, NeuroImage.

[5]  R Baumgartner,et al.  Fuzzy clustering of gradient‐echo functional MRI in the human visual cortex. Part I: Reproducibility , 1997, Journal of magnetic resonance imaging : JMRI.

[6]  Terrence J. Sejnowski,et al.  An Information-Maximization Approach to Blind Separation and Blind Deconvolution , 1995, Neural Computation.

[7]  D. Tank,et al.  Brain magnetic resonance imaging with contrast dependent on blood oxygenation. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[8]  Karl J. Friston,et al.  Assessing the significance of focal activations using their spatial extent , 1994, Human brain mapping.

[9]  J C Gore,et al.  An roc approach for evaluating functional brain mr imaging and postprocessing protocols , 1995, Magnetic resonance in medicine.

[10]  S. Lai,et al.  A novel local PCA-Based method for detecting activation signals in fMRI , 1999 .

[11]  V D Calhoun,et al.  Spatial and temporal independent component analysis of functional MRI data containing a pair of task‐related waveforms , 2001, Human brain mapping.

[12]  E. Bullmore,et al.  Statistical methods of estimation and inference for functional MR image analysis , 1996, Magnetic resonance in medicine.

[13]  L. K. Hansen,et al.  On Clustering fMRI Time Series , 1999, NeuroImage.

[14]  S. Ruan,et al.  A multistep Unsupervised Fuzzy Clustering Analysis of fMRI time series , 2000, Human brain mapping.

[15]  D. Noll,et al.  Nonlinear Aspects of the BOLD Response in Functional MRI , 1998, NeuroImage.

[16]  Ray L. Somorjai,et al.  Exploratory data analysis in functional neuroimaging , 2002, Artif. Intell. Medicine.

[17]  T A Carpenter,et al.  Colored noise and computational inference in neurophysiological (fMRI) time series analysis: Resampling methods in time and wavelet domains , 2001, Human brain mapping.

[18]  G. Glover Deconvolution of Impulse Response in Event-Related BOLD fMRI1 , 1999, NeuroImage.

[19]  Karl J. Friston,et al.  Statistical parametric maps in functional imaging: A general linear approach , 1994 .

[20]  Richard A. Harshman,et al.  Noise Reduction in BOLD-Based fMRI Using Component Analysis , 2002, NeuroImage.

[21]  N. Huang,et al.  The empirical mode decomposition and the Hilbert spectrum for nonlinear and non-stationary time series analysis , 1998, Proceedings of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences.

[22]  Iwao Kanno,et al.  Activation detection in functional MRI using subspace modeling and maximum likelihood estimation , 1999, IEEE Transactions on Medical Imaging.

[23]  A. Andersen,et al.  Principal component analysis of the dynamic response measured by fMRI: a generalized linear systems framework. , 1999, Magnetic resonance imaging.

[24]  R Baumgartner,et al.  Quantification of intensity variations in functional MR images using rotated principal components. , 1996, Physics in medicine and biology.

[25]  B. Biswal,et al.  Functional connectivity in the motor cortex of resting human brain using echo‐planar mri , 1995, Magnetic resonance in medicine.

[26]  Chung-Chih Lin,et al.  Model Free Functional MRI Analysis Using Kohonen Clustering Neural Network , 1999, IEEE Trans. Medical Imaging.

[27]  S Makeig,et al.  Analysis of fMRI data by blind separation into independent spatial components , 1998, Human brain mapping.

[28]  Karl J. Friston,et al.  Analysis of fMRI Time-Series Revisited , 1995, NeuroImage.

[29]  Karl J. Friston,et al.  Functional Connectivity: The Principal-Component Analysis of Large (PET) Data Sets , 1993, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

[30]  R Baumgartner,et al.  A hierarchical clustering method for analyzing functional MR images. , 1999, Magnetic resonance imaging.

[31]  J. Pekar,et al.  A method for making group inferences from functional MRI data using independent component analysis , 2001, Human brain mapping.

[32]  R Baumgartner,et al.  Fuzzy clustering of gradient‐echo functional MRI in the human visual cortex. Part II: Quantification , 1997, Journal of magnetic resonance imaging : JMRI.

[33]  Jonathan D. Cohen,et al.  Improved Assessment of Significant Activation in Functional Magnetic Resonance Imaging (fMRI): Use of a Cluster‐Size Threshold , 1995, Magnetic resonance in medicine.

[34]  Mohamed-Jalal Fadili,et al.  On the number of clusters and the fuzziness index for unsupervised FCA application to BOLD fMRI time series , 2001, Medical Image Anal..

[35]  Karl J. Friston,et al.  A unified statistical approach for determining significant signals in images of cerebral activation , 1996, Human brain mapping.

[36]  Nick Medford,et al.  Time courses of left and right amygdalar responses to fearful facial expressions , 2001 .

[37]  Tzyy-Ping Jung,et al.  Imaging brain dynamics using independent component analysis , 2001, Proc. IEEE.

[38]  J Xiong,et al.  Assessment and optimization of functional MRI analyses , 1996, Human brain mapping.

[39]  Karl J. Friston,et al.  Analysis of functional MRI time‐series , 1994, Human Brain Mapping.

[40]  Gholam-Ali Hossein-Zadeh,et al.  Multiresolution fMRI activation detection using translation invariant wavelet transform and statistical analysis based on resampling , 2003, IEEE Transactions on Medical Imaging.

[41]  Yingli Lu,et al.  A split–merge‐based region‐growing method for fMRI activation detection , 2004, Human brain mapping.

[42]  John C. Gore,et al.  ROC Analysis of Statistical Methods Used in Functional MRI: Individual Subjects , 1999, NeuroImage.

[43]  Karl J. Friston,et al.  Detecting Activations in PET and fMRI: Levels of Inference and Power , 1996, NeuroImage.

[44]  Karl J. Friston Modes or models: a critique on independent component analysis for fMRI , 1998, Trends in Cognitive Sciences.

[45]  S.J. Kisner,et al.  Testing the distribution of nonstationary MRI data , 2004, The 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

[46]  E C Wong,et al.  Processing strategies for time‐course data sets in functional mri of the human brain , 1993, Magnetic resonance in medicine.

[47]  R. Turner,et al.  Event-Related fMRI: Characterizing Differential Responses , 1998, NeuroImage.