Using Multi Level Nearest Neighbor Classifiers for G-Protein Coupled Receptor Sub-families Prediction
暂无分享,去创建一个
Asifullah Khan | Alex Kavokin | Adnan Mujahid | Mudassir Fayyaz | Asifullah Khan | A. Mujahid | A. Kavokin | M. Fayyaz
[1] David G. Stork,et al. Pattern Classification (2nd ed.) , 1999 .
[2] David Haussler,et al. Classifying G-protein coupled receptors with support vector machines , 2002, Bioinform..
[3] David G. Stork,et al. Pattern Classification , 1973 .
[4] P Bork,et al. Wanted: subcellular localization of proteins based on sequence. , 1998, Trends in cell biology.
[5] R. Grantham. Amino Acid Difference Formula to Help Explain Protein Evolution , 1974, Science.
[6] R. Doolittle,et al. A simple method for displaying the hydropathic character of a protein. , 1982, Journal of molecular biology.
[7] Gert Vriend,et al. Collecting and harvesting biological data: the GPCRDB and NucleaRDB information systems , 2001, Nucleic Acids Res..
[8] Ludmila I. Kuncheva,et al. Combining Pattern Classifiers: Methods and Algorithms , 2004 .
[9] Marjana Novic,et al. Investigation of Infrared Spectra-Structure Correlation Using Kohonen and Counterpropagation Neural Network , 1995, J. Chem. Inf. Comput. Sci..
[10] David G. Stork,et al. Pattern classification, 2nd Edition , 2000 .
[11] Richard Hughey,et al. Hidden Markov models for detecting remote protein homologies , 1998, Bioinform..
[12] T. Lundstedt,et al. Classification of G‐protein coupled receptors by alignment‐independent extraction of principal chemical properties of primary amino acid sequences , 2002, Protein science : a publication of the Protein Society.
[13] Forest Baskett,et al. An Algorithm for Finding Nearest Neighbors , 1975, IEEE Transactions on Computers.
[14] G. Li,et al. Classifying G protein-coupled receptors and nuclear receptors on the basis of protein power spectrum from fast Fourier transform , 2006, Amino Acids.
[15] I. Cosic. Macromolecular bioactivity: is it resonant interaction between macromolecules?-theory and applications , 1994, IEEE Transactions on Biomedical Engineering.
[16] Vasilis J. Promponas,et al. PRED-GPCR: GPCR recognition and family classification server , 2004, Nucleic Acids Res..
[17] K. Chou,et al. Prediction of protein structural classes. , 1995, Critical reviews in biochemistry and molecular biology.
[18] Yanzhi Guo,et al. Fast fourier transform-based support vector machine for prediction of G-protein coupled receptor subfamilies. , 2005, Acta biochimica et biophysica Sinica.
[19] Kuo-Chen Chou,et al. Predicting protein structural class by functional domain composition. , 2004, Biochemical and biophysical research communications.
[20] T. Kikuchi,et al. Construction of Hypothetical Three-Dimensional Structure of P2Y1 Receptor Based on Fourier Transform Analysis , 2002, Journal of protein chemistry.
[21] Denise Gorse,et al. A novel approach to the recognition of protein architecture from sequence using fourier analysis and neural networks , 2002, Proteins.
[22] Zoi I. Litou,et al. A Novel method for GPCR recognition and family classification from sequence alone using signatures derived from profile hidden Markov models , 2003, SAR and QSAR in environmental research.
[23] W. Stigelman,et al. Goodman and Gilman's the Pharmacological Basis of Therapeutics , 1986 .
[24] Michael F. Shlesinger,et al. WAVELET TRANSFORMATION OF PROTEIN HYDROPHOBICITY SEQUENCES SUGGESTS THEIR MEMBERSHIPS IN STRUCTURAL FAMILIES , 1997 .
[25] Peter E. Hart,et al. Nearest neighbor pattern classification , 1967, IEEE Trans. Inf. Theory.
[26] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[27] Asifullah Khan,et al. Combination of support vector machines using genetic programming , 2006, Int. J. Hybrid Intell. Syst..
[28] Subhash C. Bagui,et al. Combining Pattern Classifiers: Methods and Algorithms , 2005, Technometrics.
[29] Gajendra P. S. Raghava,et al. GPCRpred: an SVM-based method for prediction of families and subfamilies of G-protein coupled receptors , 2004, Nucleic Acids Res..
[30] B. Matthews. Comparison of the predicted and observed secondary structure of T4 phage lysozyme. , 1975, Biochimica et biophysica acta.
[31] Asifullah Khan,et al. Combination and optimization of classifiers in gender classification using genetic programming , 2005 .
[32] Sean R. Eddy,et al. Pfam: multiple sequence alignments and HMM-profiles of protein domains , 1998, Nucleic Acids Res..
[33] K. Katoh,et al. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. , 2002, Nucleic acids research.
[34] K. Chou,et al. Using Functional Domain Composition and Support Vector Machines for Prediction of Protein Subcellular Location* , 2002, The Journal of Biological Chemistry.