Agricultural crop discrimination in a heterogeneous low-mountain range region based on multi-temporal and multi-sensor satellite data

Abstract Crop type information such as its location and spatial distribution is relevant for agricultural planning and decision making about food sustainability and security. This information can be obtained through the analysis of images obtained through optical satellite remote sensing. Activities such as accurate discrimination of crops require dense time-series of satellite data which can capture the diverse crop phenology. However, given the presence of clouds at important periods of crops’ development, the required time-series is impossible to obtain from just one optical satellite sensor. The Harmonized Landsat and Sentinel-2 (HLS) project by NASA provides fused data from both Operational Land Imager and Multispectral Instrument optical sensors of Landsat and Sentinel systems respectively. The present study used a multi-temporal HLS data and a target-oriented cross-validation (TOV) modelling approach with random forest algorithm to discriminate 13 crop types. 15 phenological metrics derived from time-series HLS data, together with 48 spectral and 2 topographic information were used as predictors in the model. A forward feature selection (FFS) procedure of the TOV was used to improve the classification model. 16 predictors comprising of spectral, phenological and topographic information were selected as useful for the crop discrimination. An independent accuracy assessment of the final model based on the selected predictors by the FFS procedure resulted in an overall accuracy of 76%. While most of the crop classes, achieved higher producer’s and user’s accuracies (>80%), the discrimination accuracies of potato, summer oat and winter triticale were comparatively low (

[1]  Gustavo A. Slafer,et al.  Wheat: Ecology and Physiology of Yield Determination , 1999 .

[2]  Mingquan Wu,et al.  An improved high spatial and temporal data fusion approach for combining Landsat and MODIS data to generate daily synthetic Landsat imagery , 2016, Inf. Fusion.

[3]  Giles M. Foody,et al.  Status of land cover classification accuracy assessment , 2002 .

[4]  C. Tucker Red and photographic infrared linear combinations for monitoring vegetation , 1979 .

[5]  R. Fischer The importance of grain or kernel number in wheat: A reply to Sinclair and Jamieson , 2008 .

[6]  R. Congalton,et al.  Accuracy assessment: a user's perspective , 1986 .

[7]  Tomislav Hengl,et al.  Improving performance of spatio-temporal machine learning models using forward feature selection and target-oriented validation , 2018, Environ. Model. Softw..

[8]  Martha C. Anderson,et al.  Toward mapping crop progress at field scales through fusion of Landsat and MODIS imagery , 2017 .

[9]  Kevin Tansey,et al.  Remote sensing for detection and monitoring of vegetation affected by oil spills , 2018 .

[10]  Claire Marais-Sicre,et al.  In-Season Mapping of Irrigated Crops Using Landsat 8 and Sentinel-1 Time Series , 2019, Remote. Sens..

[11]  Christopher O. Justice,et al.  Cloud cover throughout the agricultural growing season: Impacts on passive optical earth observations , 2015 .

[12]  D. Barrett,et al.  Estimating fractional cover of photosynthetic vegetation, non-photosynthetic vegetation and bare soil in the Australian tropical savanna region upscaling the EO-1 Hyperion and MODIS sensors. , 2009 .

[13]  M. Möller,et al.  Detection of Phenology-Defined Data Acquisition Time Frames For Crop Type Mapping , 2018, PFG – Journal of Photogrammetry, Remote Sensing and Geoinformation Science.

[14]  S. E. Franklin,et al.  Classification of alpine vegetation using Landsat Thematic Mapper SPOT HRV and DEM data , 1994 .

[15]  Luiz Henrique Antunes Rodrigues,et al.  Neglecting spatial autocorrelation causes underestimation of the error of sugarcane yield models , 2019, Comput. Electron. Agric..

[16]  Leo Breiman,et al.  Random Forests , 2001, Machine Learning.

[17]  Nataliia Kussul,et al.  Winter Wheat Yield Assessment from Landsat 8 and Sentinel-2 Data: Incorporating Surface Reflectance, Through Phenological Fitting, into Regression Yield Models , 2019, Remote. Sens..

[18]  S. Tarantola,et al.  Detecting vegetation leaf water content using reflectance in the optical domain , 2001 .

[19]  R. G. Smith,et al.  Forecasting wheat yield in a Mediterranean-type environment from the NOAA satellite , 1995 .

[20]  Patrick Hostert,et al.  Towards national-scale characterization of grassland use intensity from integrated Sentinel-2 and Landsat time series , 2020 .

[21]  T. Astor,et al.  Multi-Temporal Agricultural Land-Cover Mapping Using Single-Year and Multi-Year Models Based on Landsat Imagery and IACS Data , 2019, Agronomy.

[22]  M. Adams,et al.  Loss of patch-scale heterogeneity on primary productivity and rainfall-use efficiency in Western Australia , 2003 .

[23]  Wang Futang,et al.  Monitoring winter wheat growth in North China by combining a crop model and remote sensing data , 2008 .

[24]  Robert M. Haralick,et al.  Textural Features for Image Classification , 1973, IEEE Trans. Syst. Man Cybern..

[25]  K. Reddy,et al.  Topographic normalization of satellite imagery for image classification in northeast India , 2009 .

[26]  Kenichi Tatsumi,et al.  Crop classification of upland fields using Random forest of time-series Landsat 7 ETM+ data , 2015, Comput. Electron. Agric..

[27]  Tim Appelhans,et al.  Comparison of four machine learning algorithms for their applicability in satellite-based optical rainfall retrievals , 2015 .

[28]  J. Schultz,et al.  Effect of time of sowing on wheat phenology in South Australia , 1979 .

[29]  Saskia Foerster,et al.  Crop type mapping using spectral-temporal profiles and phenological information , 2012 .

[30]  Mark A. Friedl,et al.  Continental-scale land surface phenology from harmonized Landsat 8 and Sentinel-2 imagery , 2020, Remote Sensing of Environment.

[31]  G. Donald,et al.  Estimating spatio-temporal patterns of agricultural productivity in fragmented landscapes using AVHRR NDVI time series , 2003 .

[32]  J. Zadoks A decimal code for the growth stages of cereals , 1974 .

[33]  P. Gong,et al.  Efficient corn and soybean mapping with temporal extendability: A multi-year experiment using Landsat imagery , 2014 .

[34]  Gregory S. McMaster,et al.  Phenological responses of wheat and barley to water and temperature: improving simulation models , 2003, The Journal of Agricultural Science.

[35]  Michael J. Hill,et al.  Use of Vegetation Index “Fingerprints” From Hyperion Data to Characterize Vegetation States Within Land Cover/Land Use Types in an Australian Tropical Savanna , 2013, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[36]  Rajendra P. Shrestha,et al.  Application of DEM Data to Landsat Image Classification: Evaluation in a Tropical Wet-Dry Landscape of Thailand , 2000 .

[37]  C. W Wrigley,et al.  Transport of dry matter into developing wheat kernels and its contribution to grain yield under post-anthesis water deficit and elevated temperature , 2004 .

[38]  Janet Franklin,et al.  Terrain variables used for predictive mapping of vegetation communities in southern California , 2000 .

[39]  Tomislav Hengl,et al.  Spatio-temporal interpolation of soil water, temperature, and electrical conductivity in 3D + T: The Cook Agronomy Farm data set , 2015 .

[40]  P. Gong,et al.  Phenology-based Crop Classification Algorithm and its Implications on Agricultural Water Use Assessments in California’s Central Valley , 2012 .

[41]  Nicholas C. Coops,et al.  Virtual constellations for global terrestrial monitoring , 2015 .

[42]  David P. Roy,et al.  A Global Analysis of Sentinel-2A, Sentinel-2B and Landsat-8 Data Revisit Intervals and Implications for Terrestrial Monitoring , 2017, Remote. Sens..

[43]  Patrick Hostert,et al.  Intra-annual reflectance composites from Sentinel-2 and Landsat for national-scale crop and land cover mapping , 2019, Remote Sensing of Environment.

[44]  B. Gao NDWI—A normalized difference water index for remote sensing of vegetation liquid water from space , 1996 .

[45]  Mariana Belgiu,et al.  Sentinel-2 cropland mapping using pixel-based and object-based time-weighted dynamic time warping analysis , 2018 .

[46]  Jiejun Huang,et al.  Integrating the SD-CLUE-S and InVEST models into assessment of oasis carbon storage in northwestern China , 2017, PloS one.

[47]  Per Jönsson,et al.  Seasonality extraction by function fitting to time-series of satellite sensor data , 2002, IEEE Trans. Geosci. Remote. Sens..

[48]  Joanne C. White,et al.  A new data fusion model for high spatial- and temporal-resolution mapping of forest disturbance based on Landsat and MODIS , 2009 .