Mechanism of peptide hydrolysis by co-catalytic metal centers containing leucine aminopeptidase enzyme: a DFT approach

[1]  N. Russo,et al.  Can human prolidase enzyme use different metals for full catalytic activity? , 2011, Inorganic chemistry.

[2]  Arghya Barman,et al.  Which one among aspartyl protease, metallopeptidase, and artificial metallopeptidase is the most efficient catalyst in peptide hydrolysis? , 2010, The journal of physical chemistry. B.

[3]  Junghun Suh,et al.  Target-selective peptide-cleaving catalysts as a new paradigm in drug design. , 2009, Chemical Society reviews.

[4]  W. Sheldrick,et al.  Downstream reaction of cisplatin with methionine-containing peptides: pH-dependent competition between hydrolytic cleavage and macrochelation , 2009 .

[5]  Eric Meggers,et al.  Targeting proteins with metal complexes. , 2009, Chemical communications.

[6]  Arghya Barman,et al.  Computational insights into aspartyl protease activity of presenilin 1 (PS1) generating Alzheimer amyloid beta-peptides (Abeta40 and Abeta42). , 2009, The journal of physical chemistry. B.

[7]  M. Kassai,et al.  Tuning Zr(IV)-assisted peptide hydrolysis at near-neutral pH , 2008 .

[8]  N. Russo,et al.  Peptide hydrolysis by the binuclear zinc enzyme aminopeptidase from Aeromonas proteolytica: a density functional theory study. , 2008, The journal of physical chemistry. B.

[9]  Junghun Suh,et al.  Cleavage Agents for Soluble Oligomers of Amyloid β Peptides , 2007 .

[10]  Wei-Jen Tang,et al.  Structure of Substrate-free Human Insulin-degrading Enzyme (IDE) and Biophysical Analysis of ATP-induced Conformational Switch of IDE* , 2007, Journal of Biological Chemistry.

[11]  N. Russo,et al.  Which one among Zn(II), Co(II), Mn(II), and Fe(II) is the most efficient ion for the methionine aminopeptidase catalyzed reaction? , 2007, Journal of the American Chemical Society.

[12]  A. Arif,et al.  Amide hydrolysis reactivity of a N4O-ligated zinc complex: comparison of kinetic and themodynamic parameters with those of the corresponding amide methanolysis reaction. , 2007, Inorganic chemistry.

[13]  L. Walling,et al.  Leucine aminopeptidases: diversity in structure and function , 2006, Biological chemistry.

[14]  D. Truhlar,et al.  A new local density functional for main-group thermochemistry, transition metal bonding, thermochemical kinetics, and noncovalent interactions. , 2006, The Journal of chemical physics.

[15]  A. Joachimiak,et al.  Structures of human insulin-degrading enzyme reveal a new substrate recognition mechanism , 2006, Nature.

[16]  W. Sheldrick,et al.  Cisplatin mediates selective downstream hydrolytic cleavage of Met-(Gly)(n)-His segments (n=1,2) in methionine- and histidine-containing peptides: the role of ammine loss trans to the initial Pt-S(Met) anchor in facilitating amide hydrolysis. , 2006, Journal of inorganic biochemistry.

[17]  Per E. M. Siegbahn,et al.  The performance of hybrid DFT for mechanisms involving transition metal complexes in enzymes , 2006, JBIC Journal of Biological Inorganic Chemistry.

[18]  L. Walling Recycling or regulation? The role of amino-terminal modifying enzymes. , 2006, Current opinion in plant biology.

[19]  Fabienne Courtois,et al.  Escherichia coli cyclopropane fatty acid synthase: is a bound bicarbonate ion the active-site base? , 2005, Biochemistry.

[20]  J. Vicente,et al.  Aqua palladium complexes: synthesis, properties and applications , 2005 .

[21]  Yi-zhi Li,et al.  Synergic effect of two metal centers in catalytic hydrolysis of methionine-containing peptides promoted by dinuclear palladium(II) hexaazacyclooctadecane complex. , 2005, Dalton transactions.

[22]  Jennie Weston,et al.  Mode of action of bi- and trinuclear zinc hydrolases and their synthetic analogues. , 2005, Chemical reviews.

[23]  V K Antonov,et al.  Studies on the mechanisms of action of proteolytic enzymes using heavy oxygen exchange. , 2005, European journal of biochemistry.

[24]  C. Kumar,et al.  Photocleavage of lysozyme by cobalt(III) complexes. , 2005, Inorganic chemistry.

[25]  S. Parsons,et al.  Zinc(II) complexes with intramolecular amide oxygen coordination as models of metalloamidases. , 2004, Dalton transactions.

[26]  Jian Li,et al.  Quantum chemical studies of intermediates and reaction pathways in selected enzymes and catalytic synthetic systems. , 2004, Chemical reviews.

[27]  Gerard Parkin,et al.  Synthetic analogues relevant to the structure and function of zinc enzymes. , 2004, Chemical reviews.

[28]  N. Kostić,et al.  Transition-metal complexes as enzyme-like reagents for protein cleavage: complex cis-[Pt(en)(H2O)2]2+ as a new methionine-specific protease. , 2003, Chemistry.

[29]  Yves M. Galante and Cristina Formantici Enzyme Applications in Detergency and in Manufacturing Industries , 2003 .

[30]  A. Arif,et al.  Mononuclear N3S(thioether)-ligated copper(II) methoxide complexes: synthesis, characterization, and hydrolytic reactivity. , 2003, Inorganic chemistry.

[31]  Fahmi Himo,et al.  Quantum chemical studies of radical-containing enzymes. , 2003, Chemical reviews.

[32]  Richard C Holz,et al.  Co-catalytic metallopeptidases as pharmaceutical targets. , 2003, Current opinion in chemical biology.

[33]  J. Suh,et al.  Synthetic artificial peptidases and nucleases using macromolecular catalytic systems. , 2003, Accounts of chemical research.

[34]  Per E M Siegbahn,et al.  Mechanisms of metalloenzymes studied by quantum chemical methods , 2003, Quarterly Reviews of Biophysics.

[35]  N. Kostić,et al.  Palladium(II) complex as a sequence-specific peptidase: hydrolytic cleavage under mild conditions of X-Pro peptide bonds in X-Pro-Met and X-Pro-His segments. , 2003, Journal of the American Chemical Society.

[36]  B. Matthews,et al.  Metalloaminopeptidases: common functional themes in disparate structural surroundings. , 2002, Chemical reviews.

[37]  Anselm H. C. Horn,et al.  The Reaction Mechanism of Bovine Lens Leucine Aminopeptidase. , 2002, The journal of physical chemistry. B.

[38]  James C Sacchettini,et al.  Crystal Structures of Mycolic Acid Cyclopropane Synthases fromMycobacterium tuberculosis * , 2002, The Journal of Biological Chemistry.

[39]  J. Weston,et al.  Development of a Working Model of the Active Site in Bovine Lens Leucine Aminopeptidase: A Density Functional Investigation , 2002, Chembiochem : a European journal of chemical biology.

[40]  H. Park,et al.  Metal ion binding and activation of Streptomyces griseus dinuclear aminopeptidase: cadmium(II) binding as a model , 2001, JBIC Journal of Biological Inorganic Chemistry.

[41]  G. Siuzdak,et al.  Mass spectrometry in viral proteomics. , 2000, Accounts of chemical research.

[42]  A. Goldberg,et al.  Proteolysis and class I major histocompatibility complex antigen presentation , 1999, Immunological reviews.

[43]  L. Sun,et al.  A bicarbonate ion as a general base in the mechanism of peptide hydrolysis by dizinc leucine aminopeptidase. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[44]  D. Sherratt,et al.  X‐ray structure of aminopeptidase A from Escherichia coli and a model for the nucleoprotein complex in Xer site‐specific recombination , 1999, The EMBO journal.

[45]  M. Rao,et al.  Molecular and Biotechnological Aspects of Microbial Proteases , 1998, Microbiology and Molecular Biology Reviews.

[46]  E. Hegg,et al.  Toward the development of metal-based synthetic nucleases and peptidases: a rationale and progress report in applying the principles of coordination chemistry , 1998 .

[47]  Jacopo Tomasi,et al.  A new integral equation formalism for the polarizable continuum model: Theoretical background and applications to isotropic and anisotropic dielectrics , 1997 .

[48]  Edward I. Solomon,et al.  Structural and Functional Aspects of Metal Sites in Biology. , 1996, Chemical reviews.

[49]  William N. Lipscomb,et al.  Recent Advances in Zinc Enzymology. , 1996, Chemical reviews.

[50]  G. Charles Dismukes,et al.  Manganese Enzymes with Binuclear Active Sites. , 1996, Chemical reviews.

[51]  Richard Wolfenden,et al.  Rates of Uncatalyzed Peptide Bond Hydrolysis in Neutral Solution and the Transition State Affinities of Proteases , 1996 .

[52]  W. Lipscomb,et al.  Two-metal ion mechanism of bovine lens leucine aminopeptidase: active site solvent structure and binding mode of L-leucinal, a gem-diolate transition state analogue, by X-ray crystallography. , 1995, Biochemistry.

[53]  W. Lipscomb,et al.  Transition state analogue L-leucinephosphonic acid bound to bovine lens leucine aminopeptidase: X-ray structure at 1.65 A resolution in a new crystal form. , 1995, Biochemistry.

[54]  Kenneth D. Karlin,et al.  Facile amide hydrolysis effected by dinuclear copper complexes , 1993 .

[55]  W. Lipscomb,et al.  X-ray crystallographic determination of the structure of bovine lens leucine aminopeptidase complexed with amastatin: formulation of a catalytic mechanism featuring a gem-diolate transition state. , 1993, Biochemistry.

[56]  Long-gen Zhu,et al.  Selective hydrolysis of peptides, promoted by palladium aqua complexes : kinetic effects of the leaving group, pH, and inhibitors , 1993 .

[57]  A. Becke Density-functional thermochemistry. III. The role of exact exchange , 1993 .

[58]  A. Taylor Aminopeptidases: structure and function , 1993, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[59]  Junghun Suh,et al.  Model Studies of Metalloenzymes Involving Metal Ions as Lewis Acid Catalysts , 1992 .

[60]  W. Lipscomb,et al.  Structure determination and refinement of bovine lens leucine aminopeptidase and its complex with bestatin. , 1992, Journal of molecular biology.

[61]  T. Rana,et al.  Transfer of oxygen from an artificial protease to peptide carbon during proteolysis. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[62]  J. Chin Developing Artificial Hydrolytic Metalloenzymes by a Unified Mechanistic Approach , 1991 .

[63]  W. Lipscomb,et al.  Molecular structure of leucine aminopeptidase at 2.7-A resolution. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[64]  T. Rana,et al.  Specific cleavage of a protein by an attached iron chelate , 1990 .

[65]  A. Becke,et al.  Density-functional exchange-energy approximation with correct asymptotic behavior. , 1988, Physical review. A, General physics.

[66]  A. Beaudet,et al.  Prenatal diagnosis of cystic fibrosis: microvillar enzymes and DNA analysis compared. , 1988, Clinical chemistry.

[67]  D. Buckingham,et al.  Cobalt(III)-promoted hydrolysis of amino acid esters and peptides and the synthesis of small peptides , 1987 .

[68]  J. Groves,et al.  Models of zinc-containing proteases. Rapid amide hydrolysis by an unusually acidic Zn2+-OH2 complex , 1985 .

[69]  M. P. Allen,et al.  Kinetic parameters of metal-substituted leucine aminopeptidase from bovine lens. , 1983, Biochemistry.

[70]  Helmut Sigel,et al.  Coordinating properties of the amide bond. Stability and structure of metal ion complexes of peptides and related ligands , 1982 .

[71]  G. A. Thompson,et al.  Leucine aminopeptidase (bovine lens). The relative binding of cobalt and zinc to leucine aminopeptidase and the effect of cobalt substitution on specific activity. , 1976, The Journal of biological chemistry.

[72]  F. H. Carpenter,et al.  Leucine aminopeptidase (Bovine lens). Mechanism of activation by Mg 2+ and Mn 2+ of the zinc metalloenzyme, amino acid composition, and sulfhydryl content. , 1973, The Journal of biological chemistry.

[73]  F. H. Carpenter,et al.  Intermolecular cross-linking of monomeric proteins and cross-linking of oligomeric proteins as a probe of quaternary structure. Application to leucine aminopeptidase (bovine lens). , 1972, The Journal of biological chemistry.

[74]  P. Woolley,et al.  Metal ion function in carbonic anhydrase. , 1972, Angewandte Chemie.

[75]  F. H. Carpenter,et al.  Leucine aminopeptidase (bovine lens). Stability and size of subunits. , 1971, The Journal of biological chemistry.

[76]  S. Himmelhoch Leucine aminopeptidase: a zinc metloenzyme. , 1969, Archives of biochemistry and biophysics.

[77]  T. Heyduk,et al.  Hydroxyl radical footprinting of proteins using metal ion complexes. , 2001, Metal ions in biological systems.

[78]  W. R. Wadt,et al.  Ab initio effective core potentials for molecular calculations , 1984 .