Peroxisomal L-bifunctional enzyme (Ehhadh) is essential for the production of medium-chain dicarboxylic acids

L-bifunctional enzyme (Ehhadh) is part of the classical peroxisomal fatty acid β-oxidation pathway. This pathway is highly inducible via peroxisome proliferator-activated receptor α (PPARα) activation. However, no specific substrates or functions for Ehhadh are known, and Ehhadh knockout (KO) mice display no appreciable changes in lipid metabolism. To investigate Ehhadh functions, we used a bioinformatics approach and found that Ehhadh expression covaries with genes involved in the tricarboxylic acid cycle and in mitochondrial and peroxisomal fatty acid oxidation. Based on these findings and the regulation of Ehhadh's expression by PPARα, we hypothesized that the phenotype of Ehhadh KO mice would become apparent after fasting. Ehhadh mice tolerated fasting well but displayed a marked deficiency in the fasting-induced production of the medium-chain dicarboxylic acids adipic and suberic acid and of the carnitine esters thereof. The decreased levels of adipic and suberic acid were not due to a deficient induction of ω-oxidation upon fasting, as Cyp4a10 protein levels increased in wild-type and Ehhadh KO mice.We conclude that Ehhadh is indispensable for the production of medium-chain dicarboxylic acids, providing an explanation for the coordinated induction of mitochondrial and peroxisomal oxidative pathways during fasting.

[1]  T. Hansen,et al.  Bioinformatics-Driven Identification and Examination of Candidate Genes for Non-Alcoholic Fatty Liver Disease , 2011, PloS one.

[2]  Trey Ideker,et al.  Cytoscape 2.8: new features for data integration and network visualization , 2010, Bioinform..

[3]  P. V. Van Veldhoven Biochemistry and genetics of inherited disorders of peroxisomal fatty acid metabolism[S] , 2010, Journal of Lipid Research.

[4]  Michael Müller,et al.  Peroxisome Proliferator-Activated Receptor Alpha Target Genes , 2010, PPAR research.

[5]  E. Chesler,et al.  Sex-specific gene expression in the BXD mouse liver. , 2010, Physiological genomics.

[6]  Matej Oresic,et al.  Peroxisomal and Microsomal Lipid Pathways Associated with Resistance to Hepatic Steatosis and Reduced Pro-inflammatory State* , 2010, The Journal of Biological Chemistry.

[7]  K. Hao,et al.  enzyme activities in human liver Systematic genetic and genomic analysis of cytochrome P 450 Material , 2010 .

[8]  M. Baes,et al.  Degradation of very long chain dicarboxylic polyunsaturated fatty acids in mouse hepatocytes, a peroxisomal process. , 2008, Biochimica et biophysica acta.

[9]  M. Hunt,et al.  Short- and medium-chain carnitine acyltransferases and acyl-CoA thioesterases in mouse provide complementary systems for transport of β-oxidation products out of peroxisomes , 2008, Cellular and Molecular Life Sciences.

[10]  Ivan Rusyn,et al.  Genome‐level analysis of genetic regulation of liver gene expression networks , 2007, Hepatology.

[11]  J. Reddy,et al.  Beta-oxidation in hepatocyte cultures from mice with peroxisomal gene knockouts. , 2007, Biochemical and biophysical research communications.

[12]  J. Hiltunen,et al.  Peroxisomal β-oxidation—A metabolic pathway with multiple functions , 2006 .

[13]  A. Arnold,et al.  Tissue-specific expression and regulation of sexually dimorphic genes in mice. , 2006, Genome research.

[14]  Ronald J A Wanders,et al.  Biochemistry of mammalian peroxisomes revisited. , 2006, Annual review of biochemistry.

[15]  S. Ferdinandusse,et al.  Clinical and biochemical spectrum of D‐bifunctional protein deficiency , 2006, Annals of neurology.

[16]  Christina Kendziorski,et al.  Combined Expression Trait Correlations and Expression Quantitative Trait Locus Mapping , 2006, PLoS genetics.

[17]  J. Hiltunen,et al.  Peroxisomal beta-oxidation--a metabolic pathway with multiple functions. , 2006, Biochimica et biophysica acta.

[18]  M. Hunt,et al.  The Identification of a Succinyl-CoA Thioesterase Suggests a Novel Pathway for Succinate Production in Peroxisomes* , 2005, Journal of Biological Chemistry.

[19]  Martin Kuiper,et al.  BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks , 2005, Bioinform..

[20]  R. Wanders,et al.  Characterization of carnitine and fatty acid metabolism in the long-chain acyl-CoA dehydrogenase-deficient mouse. , 2005, The Biochemical journal.

[21]  N. Latruffe,et al.  Targeted disruption of the peroxisomal thiolase B gene in mouse: a new model to study disorders related to peroxisomal lipid metabolism. , 2004, Biochimie.

[22]  S. Ferdinandusse,et al.  Identification of the peroxisomal beta-oxidation enzymes involved in the degradation of long-chain dicarboxylic acids. , 2004, Journal of lipid research.

[23]  Lu Lu,et al.  WebQTL: rapid exploratory analysis of gene expression and genetic networks for brain and behavior , 2004, Nature Neuroscience.

[24]  P. Vreken,et al.  Quantitative plasma acylcarnitine analysis using electrospray tandem mass spectrometry for the diagnosis of organic acidaemias and fatty acid oxidation defects , 1999, Journal of Inherited Metabolic Disease.

[25]  S. Kersten,et al.  Peroxisome proliferator-activated receptor α target genes , 2004, Cellular and Molecular Life Sciences CMLS.

[26]  Robert W. Williams,et al.  WebQTL - Web-based complex trait analysis , 2003, Neuroinformatics.

[27]  P. Carmeliet,et al.  Inactivation of the Peroxisomal Multifunctional Protein-2 in Mice Impedes the Degradation of Not Only 2-Methyl-branched Fatty Acids and Bile Acid Intermediates but Also of Very Long Chain Fatty Acids* , 2000, The Journal of Biological Chemistry.

[28]  B. Geisbrecht,et al.  Characterization of PECI, a Novel Monofunctional Δ3,Δ2-Enoyl-CoA Isomerase of Mammalian Peroxisomes* , 1999, Journal of Biological Chemistry.

[29]  D. Kelly,et al.  A critical role for the peroxisome proliferator-activated receptor alpha (PPARalpha) in the cellular fasting response: the PPARalpha-null mouse as a model of fatty acid oxidation disorders. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[30]  W. Wahli,et al.  Peroxisome proliferator–activated receptor α mediates the adaptive response to fasting , 1999 .

[31]  N. Maeda,et al.  Absence of Spontaneous Peroxisome Proliferation in Enoyl-CoA Hydratase/l-3-Hydroxyacyl-CoA Dehydrogenase-deficient Mouse Liver , 1999, The Journal of Biological Chemistry.

[32]  E. Waelkens,et al.  Comparison of the stability and substrate specificity of purified peroxisomal 3-oxoacyl-CoA thiolases A and B from rat liver. , 1999, Biochimica et biophysica acta.

[33]  W. Wahli,et al.  Peroxisome proliferator-activated receptor alpha mediates the adaptive response to fasting. , 1999, The Journal of clinical investigation.

[34]  J. Peters,et al.  Altered Constitutive Expression of Fatty Acid-metabolizing Enzymes in Mice Lacking the Peroxisome Proliferator-activated Receptor α (PPARα)* , 1998, The Journal of Biological Chemistry.

[35]  J. Peters,et al.  Altered constitutive expression of fatty acid-metabolizing enzymes in mice lacking the peroxisome proliferator-activated receptor alpha (PPARalpha). , 1998, The Journal of biological chemistry.

[36]  J. Hiltunen,et al.  Recombinant 2-enoyl-CoA hydratase derived from rat peroxisomal multifunctional enzyme 2: role of the hydratase reaction in bile acid synthesis. , 1997, The Biochemical journal.

[37]  E. Waelkens,et al.  Substrate Specificities of 3-Oxoacyl-CoA Thiolase A and Sterol Carrier Protein 2/3-Oxoacyl-CoA Thiolase Purified from Normal Rat Liver Peroxisomes , 1997, The Journal of Biological Chemistry.

[38]  M. Dieuaide-Noubhani,et al.  Evidence that multifunctional protein 2, and not multifunctional protein 1, is involved in the peroxisomal beta-oxidation of pristanic acid. , 1997, The Biochemical journal.

[39]  J. Vandekerckhove,et al.  Identification and characterization of the 2-enoyl-CoA hydratases involved in peroxisomal beta-oxidation in rat liver. , 1997, The Biochemical journal.

[40]  J. Hiltunen,et al.  Peroxisomal multifunctional enzyme of beta-oxidation metabolizing D-3-hydroxyacyl-CoA esters in rat liver: molecular cloning, expression and characterization. , 1997, The Biochemical journal.

[41]  P. Watkins,et al.  Phytanic acid activation in rat liver peroxisomes is catalyzed by long-chain acyl-CoA synthetase. , 1996, Journal of lipid research.

[42]  J. Vandekerckhove,et al.  Further characterization of the peroxisomal 3-hydroxyacyl-CoA dehydrogenases from rat liver. Relationship between the different dehydrogenases and evidence that fatty acids and the C27 bile acids di- and tri-hydroxycoprostanic acids are metabolized by separate multifunctional proteins. , 1996, European journal of biochemistry.

[43]  J. Capone,et al.  Diverse peroxisome proliferator-activated receptors bind to the peroxisome proliferator-responsive elements of the rat hydratase/dehydrogenase and fatty acyl-CoA oxidase genes but differentially induce expression. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[44]  S Subramani,et al.  Characterization of protein-DNA interactions within the peroxisome proliferator-responsive element of the rat hydratase-dehydrogenase gene. , 1993, The Journal of biological chemistry.

[45]  G. Mannaerts,et al.  Substrate specificities of rat liver peroxisomal acyl-CoA oxidases: palmitoyl-CoA oxidase (inducible acyl-CoA oxidase), pristanoyl-CoA oxidase (non-inducible acyl-CoA oxidase), and trihydroxycoprostanoyl-CoA oxidase. , 1992, The Journal of biological chemistry.

[46]  M. Pourfarzam,et al.  Products and intermediates of the beta-oxidation of [U-14C]hexadecanedionoyl-mono-CoA by rat liver peroxisomes and mitochondria. , 1991, The Biochemical journal.

[47]  J. Hiltunen,et al.  Peroxisomal bifunctional protein from rat liver is a trifunctional enzyme possessing 2-enoyl-CoA hydratase, 3-hydroxyacyl-CoA dehydrogenase, and delta 3, delta 2-enoyl-CoA isomerase activities. , 1990, The Journal of biological chemistry.

[48]  J. Bremer,et al.  Metabolism of dicarboxylic acids in rat hepatocytes. , 1990, Biochimica et biophysica acta.

[49]  J. Vamecq,et al.  Peroxisomal and mitochondrial beta-oxidation of monocarboxylyl-CoA, omega-hydroxymonocarboxylyl-CoA and dicarboxylyl-CoA esters in tissues from untreated and clofibrate-treated rats. , 1989, Journal of biochemistry.

[50]  J. Vamecq,et al.  Rat liver metabolism of dicarboxylic acids. , 1989, The American journal of physiology.

[51]  T. Watanabe,et al.  Compartmentation of dicarboxylic acid beta-oxidation in rat liver: importance of peroxisomes in the metabolism of dicarboxylic acids. , 1989, Biochimica et biophysica acta.

[52]  S. Kolvraa,et al.  In vitro studies on the oxidation of medium-chain dicarboxylic acids in rat liver. , 1986, Biochimica et biophysica acta.

[53]  J. Carrino,et al.  Transcription regulation of peroxisomal fatty acyl-CoA oxidase and enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase in rat liver by peroxisome proliferators. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[54]  J. Vamecq,et al.  The microsomal dicarboxylyl-CoA synthetase. , 1985, The Biochemical journal.

[55]  N. Lalwani,et al.  Induction, immunochemical identity and immunofluorescence localization of an 80 000-molecular-weight peroxisome-proliferation-associated polypeptide (polypeptide PPA-80) and peroxisomal enoyl-CoA hydratase of mouse liver and renal cortex. , 1981, The Biochemical journal.

[56]  T. Hashimoto,et al.  Peroxisomal beta oxidation system of rat liver. Copurification of enoyl-CoA hydratase and 3-hydroxyacyl-CoA dehydrogenase. , 1979, Biochemical and biophysical research communications.