Comparative genomics of first available bovine Anaplasma phagocytophilum genome obtained with targeted sequence capture
暂无分享,去创建一个
V. Loux | M. Moroldo | S. Marthey | H. Boulouis | R. Maillard | N. Haddad | Thibaud Dugat | Anne-Claire Lagrée | T. Dugat
[1] Christian González-Rivera,et al. Mechanism and structure of the bacterial type IV secretion systems. , 2014, Biochimica et biophysica acta.
[2] E. Fikrig,et al. Anaplasma phagocytophilum surface protein AipA mediates invasion of mammalian host cells , 2014, Cellular microbiology.
[3] Ortiz-Zuazaga Humberto,et al. The khmer software package: enabling efficient sequence analysis , 2014 .
[4] Joseph A. Rothnagel,et al. Emerging evidence for functional peptides encoded by short open reading frames , 2014, Nature Reviews Genetics.
[5] Koichiro Tamura,et al. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.
[6] J. Carlyon,et al. Breaking in and grabbing a meal: Anaplasma phagocytophilum cellular invasion, nutrient acquisition, and promising tools for their study. , 2013, Microbes and infection.
[7] J. Hirschhorn,et al. The genomics of emerging pathogens. , 2013, Annual review of genomics and human genetics.
[8] C. Bertelli,et al. Rapid bacterial genome sequencing: methods and applications in clinical microbiology. , 2013, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
[9] R. Felsheim,et al. An Emerging Tick-Borne Disease of Humans Is Caused by a Subset of Strains with Conserved Genome Structure , 2013, Pathogens.
[10] E. G. Granquist,et al. Anaplasma phagocytophilum—a widespread multi-host pathogen with highly adaptive strategies , 2013, Front. Cell. Infect. Microbiol..
[11] C. Schwarz,et al. Type I secretion systems - a story of appendices. , 2013, Research in microbiology.
[12] B. Moumen,et al. Targeted genome enrichment for efficient purification of endosymbiont DNA from host DNA , 2012, Symbiosis.
[13] D. Raoult,et al. Emergence of human granulocytic anaplasmosis in France. , 2012, Ticks and tick-borne diseases.
[14] U. Munderloh,et al. Structure of the type IV secretion system in different strains of Anaplasma phagocytophilum , 2012, BMC Genomics.
[15] Y. Rikihisa,et al. Autophagosomes induced by a bacterial Beclin 1 binding protein facilitate obligatory intracellular infection , 2012, Proceedings of the National Academy of Sciences.
[16] E. Fikrig,et al. Anaplasma phagocytophilum Asp14 Is an Invasin That Interacts with Mammalian Host Cells via Its C Terminus To Facilitate Infection , 2012, Infection and Immunity.
[17] J. Foley,et al. Antigen variability in Anaplasma phagocytophilum during chronic infection of a reservoir host. , 2012, Microbiology.
[18] E. Fikrig,et al. Anaplasma phagocytophilum Outer Membrane Protein A Interacts with Sialylated Glycoproteins To Promote Infection of Mammalian Host Cells , 2012, Infection and Immunity.
[19] E. Winzeler,et al. Whole genome sequencing analysis of Plasmodium vivax using whole genome capture , 2012, BMC Genomics.
[20] M. Dark,et al. Determining the Repertoire of Immunodominant Proteins via Whole-Genome Amplification of Intracellular Pathogens , 2012, PloS one.
[21] Tim H. Brom,et al. A Reference-Free Algorithm for Computational Normalization of Shotgun Sequencing Data , 2012, 1203.4802.
[22] M. Soria,et al. The Twin-Arginine Translocation Pathway in α-Proteobacteria Is Functionally Preserved Irrespective of Genomic and Regulatory Divergence , 2012, PloS one.
[23] E. Fikrig,et al. Postgenomic Analyses Reveal Development of Infectious Anaplasma phagocytophilum during Transmission from Ticks to Mice , 2012, Journal of bacteriology.
[24] Daniel E. Voth,et al. Bacterial Type IV secretion systems: versatile virulence machines. , 2012, Future microbiology.
[25] P. Hooykaas,et al. Ehrlichia chaffeensis Tandem Repeat Proteins and Ank200 are Type 1 Secretion System Substrates Related to the Repeats-in-Toxin Exoprotein Family , 2011, Front. Cell. Inf. Microbio..
[26] G. Ducoffre,et al. Human anaplasmosis in Belgium: a 10-year seroepidemiological study. , 2011, Ticks and tick-borne diseases.
[27] Kevin Galinsky,et al. Hybrid selection for sequencing pathogen genomes from clinical samples , 2011, Genome Biology.
[28] F. Meurens,et al. Technical note: Validation of candidate reference genes for normalization of quantitative PCR in bovine mammary epithelial cells responding to inflammatory stimuli. , 2011, Journal of dairy science.
[29] G. Storz,et al. An expanding universe of small proteins. , 2011, Current opinion in microbiology.
[30] A. Norbeck,et al. Global Proteomic Analysis of Two Tick-Borne Emerging Zoonotic Agents: Anaplasma Phagocytophilum and Ehrlichia Chaffeensis , 2011, Front. Microbio..
[31] A. Rokas,et al. Complete Bacteriophage Transfer in a Bacterial Endosymbiont (Wolbachia) Determined by Targeted Genome Capture , 2011, Genome biology and evolution.
[32] A. Alleman,et al. Variant-specific and diminishing immune responses towards the highly variable MSP2(P44) outer membrane protein of Anaplasma phagocytophilum during persistent infection in lambs. , 2010, Veterinary immunology and immunopathology.
[33] T. Rudel,et al. Anaplasma phagocytophilum Ats-1 Is Imported into Host Cell Mitochondria and Interferes with Apoptosis Induction , 2010, PLoS pathogens.
[34] N. Nieto,et al. Antigen Diversity in the Parasitic Bacterium Anaplasma phagocytophilum Arises from Selectively-Represented, Spatially Clustered Functional Pseudogenes , 2009, PloS one.
[35] H. Tettelin,et al. Extensive genomic diversity of closely related Wolbachia strains. , 2009, Microbiology.
[36] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[37] J. Foley,et al. Diversity of Anaplasma phagocytophilum Strains, USA , 2009, Emerging infectious diseases.
[38] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[39] Jonathan D. G. Jones,et al. Application of 'next-generation' sequencing technologies to microbial genetics , 2009, Nature Reviews Microbiology.
[40] J. Dumler,et al. Silencing of Host Cell CYBB Gene Expression by the Nuclear Effector AnkA of the Intracellular Pathogen Anaplasma phagocytophilum , 2009, Infection and Immunity.
[41] João C Setubal,et al. Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology , 2009, BMC Microbiology.
[42] N. Nieto,et al. Possible Differential Host Tropism in Anaplasma phagocytophilum Strains in the Western United States , 2008, Annals of the New York Academy of Sciences.
[43] Karl Frank,et al. High-performance signal peptide prediction based on sequence alignment techniques , 2008, Bioinform..
[44] J. Anné,et al. The importance of the twin-arginine translocation pathway for bacterial virulence. , 2008, Trends in microbiology.
[45] A. Spisni,et al. The solution structure of the outer membrane lipoprotein OmlA from Xanthomonas axonopodis pv. citri reveals a protein fold implicated in protein–protein interaction , 2008, Proteins.
[46] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[47] A. Kennedy,et al. Identification of novel cytolytic peptides as key virulence determinants for community-associated MRSA , 2007, Nature Medicine.
[48] K. Chou,et al. Signal-3L: A 3-layer approach for predicting signal peptides. , 2007, Biochemical and biophysical research communications.
[49] Y. Rikihisa,et al. Anaplasma phagocytophilum AnkA secreted by type IV secretion system is tyrosine phosphorylated by Abl‐1 to facilitate infection † , 2007, Cellular microbiology.
[50] J. Westberg,et al. Intracellular pathogens go extreme: genome evolution in the Rickettsiales. , 2007, Trends in genetics : TIG.
[51] Y. Rikihisa,et al. Identification of Novel Surface Proteins of Anaplasma phagocytophilum by Affinity Purification and Proteomics , 2007, Journal of bacteriology.
[52] Jean-Michel Claverie,et al. Reductive Genome Evolution from the Mother of Rickettsia , 2007, PLoS genetics.
[53] Z. Woldehiwet. Anaplasma phagocytophilum in Ruminants in Europe , 2006, Annals of the New York Academy of Sciences.
[54] C. Ferraz,et al. Comparative Genomics of Three Strains of Ehrlichia ruminantium , 2006, Annals of the New York Academy of Sciences.
[55] George Georgiou,et al. The bacterial twin-arginine translocation pathway. , 2006, Annual review of microbiology.
[56] J. Foley,et al. Structure of the Expression Site Reveals Global Diversity in MSP2 (P44) Variants in Anaplasma phagocytophilum , 2006, Infection and Immunity.
[57] K. Bryson,et al. AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system , 2006, Nucleic acids research.
[58] J. Foley,et al. Use of real-time quantitative PCR targeting the msp2 protein gene to identify cryptic Anaplasma phagocytophilum infections in wildlife and domestic animals. , 2006, Vector borne and zoonotic diseases.
[59] C. Ferraz,et al. Comparative Genomic Analysis of Three Strains of Ehrlichia ruminantium Reveals an Active Process of Genome Size Plasticity , 2006, Journal of bacteriology.
[60] Y. Rikihisa,et al. Analysis of Involvement of the RecF Pathway in p44 Recombination in Anaplasma phagocytophilum and in Escherichia coli by Using a Plasmid Carrying the p44 Expression and p44 Donor Loci , 2006, Infection and Immunity.
[61] Jonathan Crabtree,et al. Comparative Genomics of Emerging Human Ehrlichiosis Agents , 2006, PLoS genetics.
[62] T. Mather,et al. Reservoir Competency of Goats for the Ap-Variant 1 Strain of Anaplasma phagocytophilum , 2006, Infection and Immunity.
[63] Harald Schumny,et al. Next generation , 2005, Comput. Stand. Interfaces.
[64] Gary Smith,et al. Anaplasma phagocytophilum in White-tailed Deer , 2005, Emerging infectious diseases.
[65] E. Howerth,et al. Experimental Infection of White-Tailed Deer with Anaplasma phagocytophilum, Etiologic Agent of Human Granulocytic Anaplasmosis , 2005, Journal of Clinical Microbiology.
[66] J. Dumler,et al. Anaplasma phagocytophilum AnkA binds to granulocyte DNA and nuclear proteins , 2004, Cellular microbiology.
[67] S. Brunak,et al. Improved prediction of signal peptides: SignalP 3.0. , 2004, Journal of molecular biology.
[68] S. Salzberg,et al. Versatile and open software for comparing large genomes , 2004, Genome Biology.
[69] T. Mather,et al. Inability of a variant strain of Anaplasma phagocytophilum to infect mice. , 2003, The Journal of infectious diseases.
[70] Y. Rikihisa,et al. Characterization and Transcriptional Analysis of Gene Clusters for a Type IV Secretion Machinery in Human Granulocytic and Monocytic Ehrlichiosis Agents , 2002, Infection and Immunity.
[71] S. Ray,et al. Reorganization of genera in the families Rickettsiaceae and Anaplasmataceae in the order Rickettsiales: unification of some species of Ehrlichia with Anaplasma, Cowdria with Ehrlichia and Ehrlichia with Neorickettsia, descriptions of six new species combinations and designation of Ehrlichia equi and , 2001, International journal of systematic and evolutionary microbiology.
[72] Koreaki Ito,et al. The Sec protein-translocation pathway. , 2001, Trends in microbiology.
[73] M. Vasil,et al. Pseudomonas aeruginosa fur Overlaps with a Gene Encoding a Novel Outer Membrane Lipoprotein, OmlA , 1999, Journal of bacteriology.
[74] U. Braun,et al. Experimental infection of four horses with Ehrlichia phagocytophila , 1998, Veterinary Record.
[75] U. Braun,et al. Clinical findings in cows after experimental infection with Ehrlichia phagocytophila. , 1997, Zentralblatt fur Veterinarmedizin. Reihe A.
[76] A. Zharkikh,et al. Estimation of confidence in phylogeny: the complete-and-partial bootstrap technique. , 1995, Molecular phylogenetics and evolution.
[77] A. Potter,et al. Molecular characterization of a protective outer membrane lipoprotein (OmlA) from Actinobacillus pleuropneumoniae serotype 1 , 1993, Infection and immunity.
[78] N. Saitou,et al. The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.
[79] T. Brodie,et al. Some aspects of tick-borne diseases of British sheep , 1986, Veterinary Record.
[80] R. S. Smith,et al. Equine ehrlichiosis: a disease with similarities to tick-borne fever and bovine petechial fever , 1969, Veterinary Record.
[81] S. Schuster. Next-generation sequencing transforms today's biology , 2008, Nature Methods.
[82] Mark J. Pallen,et al. Bacterial pathogenomics , 2007, Nature.