Multi‐omic network analysis identified betacellulin as a novel target of omega‐3 fatty acid attenuation of western diet‐induced nonalcoholic steatohepatitis

Clinical and preclinical studies have established that supplementing diets with ω3 polyunsaturated fatty acids (PUFA) can reduce hepatic dysfunction in nonalcoholic steatohepatitis (NASH). Herein, we used multi-omic network analysis to unveil novel mechanistic targets of ω3 PUFA effects in a preclinical mouse model of western diet induced NASH. After identifying critical molecular processes responsible for the effects of ω3 PUFA, we next performed meta-analysis of human liver cancer transcriptomes and uncovered betacellulin as a key EGFR-binding protein that was induced in liver cancer and downregulated by ω3 PUFAs in animals with NASH. We then confirmed that betacellulin acts by promoting proliferation of quiescent hepatic stellate cells, stimulating transforming growth factor–β2 and increasing collagen production. When used in combination with TLR2/4 agonists, betacellulin upregulated integrins in macrophages thereby potentiating inflammation and fibrosis. Taken together, our results suggest that suppression of betacellulin is one of the key mechanisms associated with anti-inflammatory and antifibrotic effects of ω3 PUFA during NASH. Synopsis Multi-omic network analysis points to mitochondrial cardiolipin precursors as candidate key lipids whereby ω3 fatty acids restore mitochondrial functioning. Multi-omic network analysis suggests betacellulin (BTC) as one of the key mediators of NASH suppressed by ω3 polyunsaturated fatty acids. Reduction of liver fibrosis by omega-3 fatty acids (especially by docosahexaenoic acid, DHA) is accomplished by simultaneous inhibition of betacellulin and TLR agonists. BTC promotes collagen production and induces TGFB2 in hepatic stellate cells. BTC together with TLR2/4 agonists stimulate expression of integrins in macrophages. DHA suppresses BTC-EGFR pathway in NASH animal model potentially preventing progression to hepatocellular carcinoma.

[1]  H. Tilg,et al.  Current therapies and new developments in NASH , 2022, Gut.

[2]  S. L. Friedman,et al.  Hepatic Stellate Cell-Immune Interactions in NASH , 2022, Frontiers in Endocrinology.

[3]  L. Aronne,et al.  Tirzepatide Once Weekly for the Treatment of Obesity. , 2022, The New England journal of medicine.

[4]  A. Dzutsev,et al.  Microbiota and adipocyte mitochondrial damage in type 2 diabetes are linked by Mmp12+ macrophages , 2022, The Journal of experimental medicine.

[5]  Romi Gupta,et al.  Betacellulin promotes tumor development and EGFR mutant lung cancer growth by stimulating the EGFR pathway and suppressing apoptosis , 2022, iScience.

[6]  J. Ampuero,et al.  Systematic review and meta-analysis: analysis of variables influencing the interpretation of clinical trial results in NAFLD , 2022, Journal of Gastroenterology.

[7]  M. Dezortova,et al.  Effect of Omega‐3 Polyunsaturated Fatty Acids on Lipid Metabolism in Patients With Metabolic Syndrome and NAFLD , 2022, Hepatology communications.

[8]  J. Grove,et al.  Integrins as a drug target in liver fibrosis , 2022, Liver international : official journal of the International Association for the Study of the Liver.

[9]  Misty M Attwood,et al.  Trends in Antidiabetic Drug Discovery: FDA Approved Drugs, New Drugs in Clinical Trials and Global Sales , 2022, Frontiers in Pharmacology.

[10]  P. Hockings,et al.  Hepatic Unsaturated Fatty Acids Are Linked to Lower Degree of Fibrosis in Non-alcoholic Fatty Liver Disease , 2022, Frontiers in Medicine.

[11]  Kui-Sheng Chen,et al.  Targeting PI3K/Akt signal transduction for cancer therapy , 2021, Signal Transduction and Targeted Therapy.

[12]  Myeong Jun Song,et al.  Advancing the global public health agenda for NAFLD: a consensus statement , 2021, Nature Reviews Gastroenterology & Hepatology.

[13]  R. Rodrigues,et al.  Microbiota triggers STING-type I IFN-dependent monocyte reprogramming of the tumor microenvironment , 2021, Cell.

[14]  Z. Modrušan,et al.  TGFβ2 and TGFβ3 isoforms drive fibrotic disease pathogenesis , 2021, Science Translational Medicine.

[15]  O. Feron,et al.  Peroxidation of n-3 and n-6 polyunsaturated fatty acids in the acidic tumor environment leads to ferroptosis-mediated anticancer effects. , 2021, Cell metabolism.

[16]  Hua Guo,et al.  LDLR inhibition promotes hepatocellular carcinoma proliferation and metastasis by elevating intracellular cholesterol synthesis through the MEK/ERK signaling pathway , 2021, Molecular metabolism.

[17]  I. Amit,et al.  NASH limits anti-tumour surveillance in immunotherapy-treated HCC , 2021, Nature.

[18]  Norio Kobayashi,et al.  FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs , 2020, Nucleic Acids Res..

[19]  A. Morgun,et al.  Dietary Indole-3-Carbinol Activates AhR in the Gut, Alters Th17-Microbe Interactions, and Exacerbates Insulitis in NOD Mice , 2021, Frontiers in Immunology.

[20]  P. Huber,et al.  NAD+ metabolism: pathophysiologic mechanisms and therapeutic potential , 2020, Signal Transduction and Targeted Therapy.

[21]  A. Noël,et al.  Reciprocal Interplay Between Fibrillar Collagens and Collagen-Binding Integrins: Implications in Cancer Progression and Metastasis , 2020, Frontiers in Oncology.

[22]  C. Glass,et al.  Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis. , 2020, Immunity.

[23]  R. Schmid,et al.  Unraveling ERBB network dynamics upon betacellulin signaling in pancreatic ductal adenocarcinoma in mice , 2020, Molecular oncology.

[24]  Y. Kawasawa,et al.  Gut-resident CX3CR1hi macrophages induce tertiary lymphoid structures and IgA response in situ , 2020, Science Immunology.

[25]  B. Neuschwander‐Tetri Therapeutic landscape for NAFLD in 2020. , 2020, Gastroenterology.

[26]  L. Hodson,et al.  Non-alcoholic fatty liver disease in adults: Current concepts in etiology, outcomes and management. , 2019, Endocrine reviews.

[27]  F. Tacke,et al.  Resolving the fibrotic niche of human liver cirrhosis at single-cell level , 2019, Nature.

[28]  M. Johansson,et al.  Effects of Omega-3 Fatty Acids on Immune Cells , 2019, International journal of molecular sciences.

[29]  C. Ponting,et al.  Resolving the fibrotic niche of human liver cirrhosis at single cell level , 2019, Nature.

[30]  Jiandie D. Lin,et al.  Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis. , 2019, Molecular cell.

[31]  Donna K. Slonim,et al.  Assessment of network module identification across complex diseases , 2019, Nature Methods.

[32]  M. Heikenwalder,et al.  From NASH to HCC: current concepts and future challenges , 2019, Nature Reviews Gastroenterology & Hepatology.

[33]  C. Löhr,et al.  Lipidomic and transcriptomic analysis of western diet-induced nonalcoholic steatohepatitis (NASH) in female Ldlr -/- mice , 2019, PloS one.

[34]  Alireza Hadj Khodabakhshi,et al.  Metascape provides a biologist-oriented resource for the analysis of systems-level datasets , 2019, Nature Communications.

[35]  M. Moreno-Aliaga,et al.  Oxidative Stress and Non-Alcoholic Fatty Liver Disease: Effects of Omega-3 Fatty Acid Supplementation , 2019, Nutrients.

[36]  D. Jump,et al.  Omega-3 fatty acids and nonalcoholic fatty liver disease in adults and children: where do we stand? , 2019, Current opinion in clinical nutrition and metabolic care.

[37]  Deepak L. Bhatt,et al.  Cardiovascular Risk Reduction with Icosapent Ethyl for Hypertriglyceridemia , 2019, The New England journal of medicine.

[38]  G. Jermendy,et al.  Persistence to Treatment with Novel Antidiabetic Drugs (Dipeptidyl Peptidase-4 Inhibitors, Sodium-Glucose Co-Transporter-2 Inhibitors, and Glucagon-Like Peptide-1 Receptor Agonists) in People with Type 2 Diabetes: A Nationwide Cohort Study , 2018, Diabetes Therapy.

[39]  P. Calder,et al.  Evaluation of a High Concentrate Omega-3 for Correcting the Omega-3 Fatty Acid Nutritional Deficiency in Non-Alcoholic Fatty Liver Disease (CONDIN) , 2018, Nutrients.

[40]  R. Simon,et al.  Systematic review and meta-analysis of controlled intervention studies on the effectiveness of long-chain omega-3 fatty acids in patients with nonalcoholic fatty liver disease , 2018, Nutrition reviews.

[41]  H. Zischka,et al.  Mitochondria in non-alcoholic fatty liver disease. , 2018, The international journal of biochemistry & cell biology.

[42]  M. Konerman,et al.  Pharmacotherapy for NASH: Current and emerging. , 2018, Journal of hepatology.

[43]  J. Meyerhardt,et al.  Marine ω-3 Polyunsaturated Fatty Acid and Fish Intake after Colon Cancer Diagnosis and Survival: CALGB 89803 (Alliance) , 2018, Cancer Epidemiology, Biomarkers & Prevention.

[44]  G. Shulman,et al.  Nonalcoholic Fatty Liver Disease as a Nexus of Metabolic and Hepatic Diseases. , 2018, Cell metabolism.

[45]  A. Sanyal,et al.  Nonalcoholic Steatohepatitis (NASH) and Hepatic Fibrosis: Emerging Therapies. , 2018, Annual review of pharmacology and toxicology.

[46]  V. Alves,et al.  Omega-3 PUFA modulate lipogenesis, ER stress, and mitochondrial dysfunction markers in NASH - Proteomic and lipidomic insight. , 2017, Clinical nutrition.

[47]  D. Jump,et al.  Omega-3 polyunsaturated fatty acids as a treatment strategy for nonalcoholic fatty liver disease. , 2018, Pharmacology & therapeutics.

[48]  P. Quirke,et al.  A randomised trial of the effect of omega-3 polyunsaturated fatty acid supplements on the human intestinal microbiota , 2017, Gut.

[49]  A. Alisi,et al.  Efficacy of docosahexaenoic acid-choline-vitamin E in paediatric NASH: a randomized controlled clinical trial. , 2017, Applied physiology, nutrition, and metabolism = Physiologie appliquee, nutrition et metabolisme.

[50]  D. Jump,et al.  Docosahexaenoic acid blocks progression of western diet-induced nonalcoholic steatohepatitis in obese Ldlr-/- mice , 2017, PloS one.

[51]  P. Calder,et al.  Docosahexaenoic acid enrichment in NAFLD is associated with improvements in hepatic metabolism and hepatic insulin sensitivity: a pilot study , 2017, European Journal of Clinical Nutrition.

[52]  Jianchun Chen,et al.  Expression and Function of the Epidermal Growth Factor Receptor in Physiology and Disease. , 2016, Physiological reviews.

[53]  Yong Lu,et al.  A crowdsourcing approach for reusing and meta-analyzing gene expression data , 2016, Nature Biotechnology.

[54]  T. Wynn,et al.  Macrophages in Tissue Repair, Regeneration, and Fibrosis. , 2016, Immunity.

[55]  S. Dooley,et al.  TGF-β1 and TGF-β2 abundance in liver diseases of mice and men , 2016, Oncotarget.

[56]  D. Jump,et al.  Potential for dietary ω-3 fatty acids to prevent nonalcoholic fatty liver disease and reduce the risk of primary liver cancer. , 2015, Advances in nutrition.

[57]  D. Jump,et al.  Docosahexaenoic acid attenuates Western diet-induced hepatic fibrosis in Ldlr−/− mice by targeting the TGFβ-Smad3 pathway[S] , 2015, Journal of Lipid Research.

[58]  Mary E Rinella,et al.  Nonalcoholic fatty liver disease: a systematic review. , 2015, JAMA.

[59]  Alexander D. Johnson,et al.  Making Sense of Transcription Networks , 2015, Cell.

[60]  J. Ravel,et al.  Uncovering effects of antibiotics on the host and microbiota using transkingdom gene networks , 2015, Gut.

[61]  Stephen A Ramsey,et al.  Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists , 2015, Bioinformatics and biology insights.

[62]  Hongyang Wang,et al.  EGFR has a tumor-promoting role in liver macrophages during hepatocellular carcinoma formation , 2014, Nature Cell Biology.

[63]  S. Agarwal Integrins and cadherins as therapeutic targets in fibrosis , 2014, Front. Pharmacol..

[64]  E. Wolf,et al.  The ABC of BTC: structural properties and biological roles of betacellulin. , 2014, Seminars in cell & developmental biology.

[65]  Qun Wang,et al.  Regulatory mechanisms of betacellulin in CXCL8 production from lung cancer cells , 2014, Journal of Translational Medicine.

[66]  G. Milne,et al.  A Metabolomic Analysis of Omega-3 Fatty Acid-Mediated Attenuation of Western Diet-Induced Nonalcoholic Steatohepatitis in LDLR -/- Mice , 2013, PloS one.

[67]  Karina L. Mine,et al.  Unexpected links reflect the noise in networks , 2013, Biology Direct.

[68]  Kenneth A. Philbrick,et al.  Docosahexaenoic acid attenuates hepatic inflammation, oxidative stress, and fibrosis without decreasing hepatosteatosis in a Ldlr(-/-) mouse model of western diet-induced nonalcoholic steatohepatitis. , 2013, The Journal of nutrition.

[69]  D. Brenner,et al.  Toll‐like receptor 2 and palmitic acid cooperatively contribute to the development of nonalcoholic steatohepatitis through inflammasome activation in mice , 2013, Hepatology.

[70]  Karin Breuer,et al.  InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation , 2012, Nucleic Acids Res..

[71]  D. Hume,et al.  Therapeutic applications of macrophage colony-stimulating factor-1 (CSF-1) and antagonists of CSF-1 receptor (CSF-1R) signaling. , 2012, Blood.

[72]  A. Morgun,et al.  Crosstalk between B lymphocytes, microbiota and the intestinal epithelium governs immunity versus metabolism in the gut , 2011, Nature Medicine.

[73]  S. Bischoff,et al.  Toll‐like receptor 4 is involved in the development of fructose‐induced hepatic steatosis in mice , 2009, Hepatology.

[74]  M. Moasser,et al.  The epidermal growth factor receptor family: Biology driving targeted therapeutics , 2008, Cellular and Molecular Life Sciences.

[75]  C. Ballantyne,et al.  Efficacy and tolerability of adding prescription omega-3 fatty acids 4 g/d to simvastatin 40 mg/d in hypertriglyceridemic patients: an 8-week, randomized, double-blind, placebo-controlled study. , 2007, Clinical therapeutics.

[76]  R. Schwabe,et al.  TLR4 enhances TGF-beta signaling and hepatic fibrosis. , 2007, Nature medicine.

[77]  J. Castle,et al.  expression data: the tissue distribution of human pathways , 2006 .

[78]  K. Jang,et al.  Expression of betacellulin and epidermal growth factor receptor in hepatocellular carcinoma: implications for angiogenesis. , 2006, Human pathology.

[79]  S. Friedman,et al.  Human hepatic stellate cell lines, LX-1 and LX-2: new tools for analysis of hepatic fibrosis , 2004, Gut.

[80]  Monilola A. Olayioye,et al.  The ErbB signaling network: receptor heterodimerization in development and cancer , 2000, The EMBO journal.

[81]  B. Bistrian,et al.  Conditionally essential fatty acid deficiencies in end-stage liver disease. , 1999, Nutrition.

[82]  H. Ginsberg,et al.  Safety and Efficacy of Omacor in Severe Hypertriglyceridemia , 1997, Journal of cardiovascular risk.