Rapid evolution of chemosensory receptor genes in a pair of sibling species of orchid bees (Apidae: Euglossini)

[1]  M. Knaden,et al.  Functional loss of yeast detectors parallels transition to herbivory (commentary) , 2015 .

[2]  John G Hildebrand,et al.  Evolution of herbivory in Drosophilidae linked to loss of behaviors, antennal responses, odorant receptors, and ancestral diet , 2015, Proceedings of the National Academy of Sciences.

[3]  L. Zwiebel,et al.  A determinant of odorant specificity is located at the extracellular loop 2-transmembrane domain 4 interface of an Anopheles gambiae odorant receptor subunit. , 2014, Chemical senses.

[4]  J. Rozas,et al.  Family Size Evolution in Drosophila Chemosensory Gene Families: A Comparative Analysis with a Critical Appraisal of Methods , 2014, Genome biology and evolution.

[5]  Shanlin Yu,et al.  Sequence similarity and functional comparisons of pheromone receptor orthologs in two closely related Helicoverpa species. , 2014, Insect biochemistry and molecular biology.

[6]  C. Claudianos,et al.  Odor memories regulate olfactory receptor expression in the sensory periphery , 2014, The European journal of neuroscience.

[7]  I. Kaj,et al.  Why Time Matters: Codon Evolution and the Temporal Dynamics of dN/dS , 2013, Molecular biology and evolution.

[8]  F. Gould,et al.  Specificity of the Receptor for the Major Sex Pheromone Component in Heliothis virescens , 2013, Journal of insect science.

[9]  Colin N. Dewey,et al.  De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis , 2013, Nature Protocols.

[10]  Pingxi Xu,et al.  Probing insect odorant receptors with their cognate ligands: insights into structural features. , 2013, Biochemical and biophysical research communications.

[11]  F. Cattonaro,et al.  Odorant-binding proteins and olfactory coding in the solitary bee Osmia cornuta , 2013, Cellular and Molecular Life Sciences.

[12]  J. Bång,et al.  Acquisition of species-specific perfume blends: influence of habitat-dependent compound availability on odour choices of male orchid bees (Euglossa spp.) , 2013, Oecologia.

[13]  O. Niehuis,et al.  Behavioural and genetic analyses of Nasonia shed light on the evolution of sex pheromones , 2013, Nature.

[14]  T. Eltz,et al.  Pollen diets of two sibling orchid bee species, Euglossa, in Yucatán, southern Mexico , 2013, Apidologie.

[15]  K. Katoh,et al.  MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.

[16]  W. Leal,et al.  Odorant reception in insects: roles of receptors, binding proteins, and degrading enzymes. , 2013, Annual review of entomology.

[17]  R. Butlin,et al.  LARGE‐SCALE CANDIDATE GENE SCAN REVEALS THE ROLE OF CHEMORECEPTOR GENES IN HOST PLANT SPECIALIZATION AND SPECIATION IN THE PEA APHID , 2012, Evolution; international journal of organic evolution.

[18]  J. Rozas,et al.  Unique Features of Odorant-Binding Proteins of the Parasitoid Wasp Nasonia vitripennis Revealed by Genome Annotation and Comparative Analyses , 2012, PloS one.

[19]  M. Kavanaugh,et al.  Single mutation to a sex pheromone receptor provides adaptive specificity between closely related moth species , 2012, Proceedings of the National Academy of Sciences.

[20]  H. Robertson,et al.  Sequencing and characterizing odorant receptors of the cerambycid beetle Megacyllene caryae. , 2012, Insect biochemistry and molecular biology.

[21]  R. Newcomb,et al.  Sequence Comparisons of Odorant Receptors among Tortricid Moths Reveal Different Rates of Molecular Evolution among Family Members , 2012, PloS one.

[22]  Matthew S. Burriesci,et al.  Fulcrum: condensing redundant reads from high-throughput sequencing studies , 2012, Bioinform..

[23]  Shane S. Sturrock,et al.  Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data , 2012, Bioinform..

[24]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[25]  S. Rollmann,et al.  Genetic variation in odorant receptors contributes to variation in olfactory behavior in a natural population of Drosophila melanogaster. , 2012, Chemical senses.

[26]  Martin Vingron,et al.  Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels , 2012, Bioinform..

[27]  C. Ellison,et al.  Widespread genetic linkage of mating signals and preferences in the Hawaiian cricket Laupala , 2012, Proceedings of the Royal Society B: Biological Sciences.

[28]  B. Hansson,et al.  Evolution of Insect Olfaction , 2011, Neuron.

[29]  T. Eltz,et al.  Characterization of the orchid bee Euglossa viridissima (Apidae: Euglossini) and a novel cryptic sibling species, by morphological, chemical, and genetic characters , 2011 .

[30]  Pavan Ramdya,et al.  Complementary Function and Integrated Wiring of the Evolutionarily Distinct Drosophila Olfactory Subsystems , 2011, The Journal of Neuroscience.

[31]  D. Schorkopf,et al.  Enantioselective Preference and High Antennal Sensitivity for (−)-Ipsdienol in Scent-Collecting Male Orchid Bees, Euglossa cyanura , 2011, Journal of Chemical Ecology.

[32]  L. Vosshall,et al.  A natural polymorphism alters odour and DEET sensitivity in an insect odorant receptor , 2011, Nature.

[33]  N. Friedman,et al.  Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data , 2011, Nature Biotechnology.

[34]  Björn Rotter,et al.  Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance , 2011, BMC Genomics.

[35]  Jean-Marc Lassance,et al.  GENE GENEALOGIES REVEAL DIFFERENTIATION AT SEX PHEROMONE OLFACTORY RECEPTOR LOCI IN PHEROMONE STRAINS OF THE EUROPEAN CORN BORER, OSTRINIA NUBILALIS , 2011, Evolution; international journal of organic evolution.

[36]  Julio Rozas,et al.  Comparative Genomics of the Odorant-Binding and Chemosensory Protein Gene Families across the Arthropoda: Origin and Evolutionary History of the Chemosensory System , 2011, Genome biology and evolution.

[37]  Ramón Doallo,et al.  ProtTest 3: fast selection of best-fit models of protein evolution , 2011, Bioinform..

[38]  C. Grozinger,et al.  Differential expression of odorant receptor genes involved in the sexual isolation of two Heliothis moths , 2011, Insect molecular biology.

[39]  F. Gould,et al.  Functional characterization of pheromone receptors in the tobacco budworm Heliothis virescens , 2011, Insect molecular biology.

[40]  G. Sherlock,et al.  Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads , 2010, BMC Genomics.

[41]  M. Blaxter,et al.  Comparing de novo assemblers for 454 transcriptome data , 2010, BMC Genomics.

[42]  J. Montoya-Burgos,et al.  Optimization of de novo transcriptome assembly from next-generation sequencing data. , 2010, Genome research.

[43]  Ramón Doallo,et al.  ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution , 2010, Euro-Par Workshops.

[44]  T. Gibson,et al.  Ancient Protostome Origin of Chemosensory Ionotropic Glutamate Receptors and the Evolution of Insect Taste and Olfaction , 2010, PLoS genetics.

[45]  J. Gadau,et al.  The insect chemoreceptor superfamily of the parasitoid jewel wasp Nasonia vitripennis , 2010, Insect molecular biology.

[46]  Andrew S. Nichols,et al.  Sex Pheromone Receptor Specificity in the European Corn Borer Moth, Ostrinia nubilalis , 2010, PloS one.

[47]  K. Touhara,et al.  Broadly and narrowly tuned odorant receptors are involved in female sex pheromone reception in Ostrinia moths. , 2010, Insect biochemistry and molecular biology.

[48]  M. Gonzalo Claros,et al.  SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read , 2010, BMC Bioinformatics.

[49]  T. Eltz,et al.  Chemical niche differentiation among sympatric species of orchid bees. , 2009, Ecology.

[50]  Joanna Masel,et al.  Quantitative prediction of molecular clock and ka/ks at short timescales. , 2009, Molecular biology and evolution.

[51]  R. Butlin,et al.  Large gene family expansions and adaptive evolution for odorant and gustatory receptors in the pea aphid, Acyrthosiphon pisum. , 2009, Molecular biology and evolution.

[52]  L. Kimsey The behavioural and structural aspects of grooming and related activities in euglossine bees (Hymenoptera: Apidae) , 2009 .

[53]  Arne Elofsson,et al.  TOPCONS: consensus prediction of membrane protein topology , 2009, Nucleic Acids Res..

[54]  T. Wyatt Fifty years of pheromones , 2009, Nature.

[55]  Leslie B. Vosshall,et al.  Variant Ionotropic Glutamate Receptors as Chemosensory Receptors in Drosophila , 2009, Cell.

[56]  Tatiana A. Tatusova,et al.  NCBI Reference Sequences: current status, policy and new initiatives , 2008, Nucleic Acids Res..

[57]  R. Butlin,et al.  On the scent of speciation: the chemosensory system and its role in premating isolation , 2009, Heredity.

[58]  K. Lunau,et al.  An Olfactory Shift Is Associated with Male Perfume Differentiation and Species Divergence in Orchid Bees , 2008, Current Biology.

[59]  Z. Tu,et al.  Odorant Receptor C-Terminal Motifs in Divergent Insect Species , 2008, Journal of Insect Science.

[60]  Dean P. Smith,et al.  Activation of Pheromone-Sensitive Neurons Is Mediated by Conformational Activation of Pheromone-Binding Protein , 2008, Cell.

[61]  Corbin D. Jones,et al.  Evolution of gene expression in the Drosophila olfactory system. , 2008, Molecular biology and evolution.

[62]  E. Birney,et al.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.

[63]  T. Miller,et al.  Detection of the Bacterium, Xylella fastidiosa, in Saliva of Glassy-Winged Sharpshooter, Homalodisca vitripennis , 2008, Journal of insect science.

[64]  W. Jordan,et al.  Drosophila chemoreceptor gene evolution: selection, specialization and genome size , 2008, Molecular ecology.

[65]  C. McBride,et al.  Five Drosophila Genomes Reveal Nonneutral Evolution and the Signature of Host Specialization in the Chemoreceptor Superfamily , 2007, Genetics.

[66]  Andrew S. Nichols,et al.  A honey bee odorant receptor for the queen substance 9-oxo-2-decenoic acid , 2007, Proceedings of the National Academy of Sciences.

[67]  P. Naur,et al.  Ionotropic glutamate-like receptor δ2 binds d-serine and glycine , 2007, Proceedings of the National Academy of Sciences of the United States of America.

[68]  Ziheng Yang PAML 4: phylogenetic analysis by maximum likelihood. , 2007, Molecular biology and evolution.

[69]  Junhyong Kim,et al.  Molecular evolution of Drosophila odorant receptor genes. , 2007, Molecular biology and evolution.

[70]  E. Grosse-Wilde,et al.  Candidate pheromone receptors provide the basis for the response of distinct antennal neurons to pheromonal compounds , 2007, The European journal of neuroscience.

[71]  C. McBride,et al.  Rapid evolution of smell and taste receptor genes during host specialization in Drosophila sechellia , 2007, Proceedings of the National Academy of Sciences.

[72]  Leslie B. Vosshall,et al.  Two chemosensory receptors together mediate carbon dioxide detection in Drosophila , 2007, Nature.

[73]  P. Naur,et al.  Ionotropic glutamate-like receptor delta2 binds D-serine and glycine. , 2007, Proceedings of the National Academy of Sciences of the United States of America.

[74]  R. Newcomb,et al.  Selective Pressures on Drosophila Chemosensory Receptor Genes , 2007, Journal of Molecular Evolution.

[75]  Hugh M Robertson,et al.  The chemoreceptor superfamily in the honey bee, Apis mellifera: expansion of the odorant, but not gustatory, receptor family. , 2006, Genome research.

[76]  S. Forêt,et al.  Function and evolution of a gene family encoding odorant binding-like proteins in a social insect, the honey bee (Apis mellifera). , 2006, Genome research.

[77]  Alexandros Stamatakis,et al.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models , 2006, Bioinform..

[78]  G. Wheeler,et al.  Orchid bees don't need orchids: evidence from the naturalization of an orchid bee in Florida. , 2006, Ecology.

[79]  D. Roubik,et al.  Species-specific attraction to pheromonal analogues in orchid bees , 2006, Behavioral Ecology and Sociobiology.

[80]  E. Grosse-Wilde,et al.  A pheromone-binding protein mediates the bombykol-induced activation of a pheromone receptor in vitro. , 2006, Chemical senses.

[81]  M. Mayer Glutamate receptors at atomic resolution , 2006, Nature.

[82]  K. Lunau,et al.  Species-Specific Antennal Responses to Tibial Fragrances by Male Orchid Bees , 2006, Journal of Chemical Ecology.

[83]  R. Yamaoka,et al.  Ant Nestmate and Non-Nestmate Discrimination by a Chemosensory Sensillum , 2005, Science.

[84]  K. Lunau,et al.  Juggling with volatiles: exposure of perfumes by displaying male orchid bees , 2005, Journal of Comparative Physiology A.

[85]  L. Vosshall,et al.  Functional conservation of an insect odorant receptor gene across 250 million years of evolution , 2005, Current Biology.

[86]  K. Katoh,et al.  MAFFT version 5: improvement in accuracy of multiple sequence alignment , 2005, Nucleic acids research.

[87]  R. Nielsen Statistical methods in molecular evolution , 2005 .

[88]  Ziheng Yang,et al.  Maximum Likelihood Methods for Detecting Adaptive Protein Evolution , 2005 .

[89]  P. Pelosi,et al.  Diversity of odorant-binding proteins and chemosensory proteins in insects. , 2005, Chemical senses.

[90]  Kazushige Touhara,et al.  Identification and functional characterization of a sex pheromone receptor in the silkmoth Bombyx mori. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[91]  Leslie B. Vosshall,et al.  Or83b Encodes a Broadly Expressed Odorant Receptor Essential for Drosophila Olfaction , 2004, Neuron.

[92]  K. Isono,et al.  A Single-Amino-Acid Change of the Gustatory Receptor Gene, Gr5a, Has a Major Effect on Trehalose Sensitivity in a Natural Population of Drosophila melanogaster , 2004, Genetics.

[93]  Ziheng Yang,et al.  A Maximum Likelihood Method for Detecting Functional Divergence at Individual Codon Sites, with Application to Gene Family Evolution , 2004, Journal of Molecular Evolution.

[94]  B. Bembé Functional morphology in male euglossine bees and their ability to spray fragrances (Hymenoptera, Apidae, Euglossini) , 2004 .

[95]  Peter Mombaerts,et al.  Genes and ligands for odorant, vomeronasal and taste receptors , 2004, Nature Reviews Neuroscience.

[96]  S. Cameron Phylogeny and biology of neotropical orchid bees (Euglossini). , 2004, Annual review of entomology.

[97]  W. M. Whitten,et al.  Fragrance Collection, Storage, and Accumulation by Individual Male Orchid Bees , 2004, Journal of Chemical Ecology.

[98]  W. M. Whitten,et al.  Nonfloral sources of chemicals that attract male euglossine bees (Apidae: Euglossini) , 2004, Journal of Chemical Ecology.

[99]  John R. Carlson,et al.  Integrating the Molecular and Cellular Basis of Odor Coding in the Drosophila Antenna , 2003, Neuron.

[100]  K. Katoh,et al.  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. , 2002, Nucleic acids research.

[101]  S. R. Ramírez,et al.  Abejas euglosinas (Hymenoptera: Apidae) de la Región Neotropical: Listado de especies con notassobre su biología , 2002 .

[102]  W. J. Kent,et al.  BLAT--the BLAST-like alignment tool. , 2002, Genome research.

[103]  Rolf Apweiler,et al.  Evaluation of methods for the prediction of membrane spanning regions , 2001, Bioinform..

[104]  A. Krogh,et al.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. , 2001, Journal of molecular biology.

[105]  Richard Axel,et al.  An Olfactory Sensory Map in the Fly Brain , 2000, Cell.

[106]  C. Willett,et al.  Evidence for directional selection acting on pheromone-binding proteins in the genus Choristoneura. , 2000, Molecular biology and evolution.

[107]  G. J. Blomquist,et al.  Insect pheromones--an overview of biosynthesis and endocrine regulation. , 1999, Insect biochemistry and molecular biology.

[108]  Andrey Rzhetsky,et al.  A Spatial Map of Olfactory Receptor Expression in the Drosophila Antenna , 1999, Cell.

[109]  J. Hildebrand,et al.  Insect Olfaction , 1999, Springer Berlin Heidelberg.

[110]  A. Civetta,et al.  Sex-related genes, directional sexual selection, and speciation. , 1998, Molecular biology and evolution.

[111]  J. Lake,et al.  Genomic evidence for two functionally distinct gene classes. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[112]  T Gojobori,et al.  Large-scale search for genes on which positive selection may operate. , 1996, Molecular biology and evolution.

[113]  Kay Hofmann,et al.  Tmbase-A database of membrane spanning protein segments , 1993 .

[114]  C. Boake Coevolution of senders and receivers of sexual signals: Genetic coupling and genetic correlations. , 1991, Trends in ecology & evolution.

[115]  J. Ackerman Specificity and mutual dependency of the orchid‐euglossine bee interaction , 1983 .

[116]  L. Kimsey The behaviour of male orchid bees (Apidae, Hymenoptera, Insecta) and the question of leks , 1980, Animal Behaviour.

[117]  F. Regnier,et al.  Insect pheromones. , 1968, Journal of lipid research.