Recommendations From the International Stroke Genetics Consortium, Part 1: Standardized Phenotypic Data Collection

Risk and clinical outcome of stroke, as for nearly all complex conditions, is polygenic.1 Discovering influential genetic variants offers the promise of new and personalized treatments that will substantially reduce the devastating effects of stroke on global health. Adequate power to detect multiple genetic risk alleles requires large sample sizes. Although stroke is the second leading cause of death worldwide and a major contributor to adult disability,2 no individual center can collect sufficient samples on its own. Recognizing this challenge, in 2007, stroke researchers from around the world formed the International Stroke Genetics Consortium (ISGC, http://www.strokegenetics.org). The ISGC mission is to identify genetic factors influencing stroke risk, prognosis, and treatment response by studying patients enrolled at centers around the globe. Although there has been notable early success,3–5 much work remains not only to achieve the ultimate goal of personalized medicine in stroke, finding genetic risk alleles, but also, more importantly, to develop comprehensive stroke risk assessments with actionable clinical results.6 Judging from developments in other complex diseases, such as diabetes mellitus and coronary artery disease, sample sizes of the order of 100 000 to 200 000 will be needed to identify the full range of genetic variation involved in stroke. Achieving such sample sizes requires even larger collaboration. We propose a standard methodology for data collection in stroke genetics studies to establish a best practice approach, sharing lessons learned through the ISGC. We outline the appropriate selection of case and control subjects and delineate the phenotypic data to collect, including minimum and preferred data points. Minimum requirements are prerequisites for inclusion in basic stroke genetic studies. Preferred data elements enable centers to participate in a broader variety of collaborations, such as those exploring gene–environment interactions, imaging endophenotypes, such as white matter hyperintensities, and functional …

[1]  C. Sudlow,et al.  Stroke Genetics Network (SiGN) Study: Design and Rationale for a Genome-Wide Association Study of Ischemic Stroke Subtypes , 2013, Stroke.

[2]  Jason H. Moore,et al.  Chapter 11: Genome-Wide Association Studies , 2012, PLoS Comput. Biol..

[3]  Sudha Seshadri,et al.  Predicting Stroke Through Genetic Risk Functions: The CHARGE Risk Score Project , 2014, Stroke.

[4]  Huaqin Pan,et al.  The PhenX Toolkit: Get the Most From Your Measures , 2011, American journal of epidemiology.

[5]  Amy L McGuire,et al.  Returning genetic research results: study type matters. , 2013, Personalized medicine.

[6]  H. Naess,et al.  Clinical implications of increased use of MRI in TIA , 2013, Acta neurologica Scandinavica.

[7]  A. Demchuk,et al.  Prediction of haematoma growth and outcome in patients with intracerebral haemorrhage using the CT-angiography spot sign (PREDICT): a prospective observational study , 2012, The Lancet Neurology.

[8]  M. Malkoff,et al.  The Ethnic/Racial Variations of Intracerebral Hemorrhage (ERICH) Study Protocol , 2013, Stroke.

[9]  Mary G. George,et al.  An Updated Definition of Stroke for the 21st Century: A Statement for Healthcare Professionals From the American Heart Association/American Stroke Association , 2013, Stroke.

[10]  C. Mathers,et al.  Projections of Global Mortality and Burden of Disease from 2002 to 2030 , 2006, PLoS medicine.

[11]  J. Meschia,et al.  Enrollment by Surrogate Authorization into Stroke Genetic Research , 2009 .

[12]  B. Jennett,et al.  Assessment of coma and impaired consciousness. A practical scale. , 1974, Lancet.

[13]  Pankaj Sharma,et al.  Shared Genetic Susceptibility to Ischemic Stroke and Coronary Artery Disease: A Genome-Wide Analysis of Common Variants , 2014, Stroke.

[14]  M. Nalls,et al.  Genome-Wide Analysis of Blood Pressure Variability and Ischemic Stroke , 2013, Stroke.

[15]  Thomas Benner,et al.  A Computerized Algorithm for Etiologic Classification of Ischemic Stroke: The Causative Classification of Stroke System , 2007, Stroke.

[16]  Christine Weiner,et al.  Anticipate and communicate: Ethical management of incidental and secondary findings in the clinical, research, and direct-to-consumer contexts (December 2013 report of the Presidential Commission for the Study of Bioethical Issues). , 2014, American journal of epidemiology.

[17]  Cathie Sudlow,et al.  Recommendations From the International Stroke Genetics Consortium, Part 2: Biological Sample Collection and Storage , 2015, Stroke.

[18]  H. Ellis stroke , 1997, The Lancet.

[19]  C. Warlow,et al.  Predicting Outcome After Acute and Subacute Stroke: Development and Validation of New Prognostic Models , 2002, Stroke.

[20]  Christopher R. Gignoux,et al.  Heterogeneity in Genetic Admixture across Different Regions of Argentina , 2012, PloS one.

[21]  M. Mackay,et al.  Arterial ischemic stroke risk factors: The international pediatric stroke study , 2011, Annals of neurology.

[22]  David Lee Gordon,et al.  Classification of Subtype of Acute Ischemic Stroke: Definitions for Use in a Multicenter Clinical Trial , 1993, Stroke.

[23]  Robert Bringhurst,et al.  Elements , 2008, Architectural Styles.

[24]  M. Marazita,et al.  Genome-wide Association Studies , 2012, Journal of dental research.

[25]  G. Manley,et al.  The ICH score: a simple, reliable grading scale for intracerebral hemorrhage. , 2001, Stroke.

[26]  T. Harris Anticipate and Communicate: Ethical Management of Incidental and Secondary Findings in the Clinical, Research, and Direct-to-Consumer Contexts , 2013 .

[27]  G. Newman Clarification of abc/2 rule for ICH volume. , 2007, Stroke.

[28]  Benjamin F. J. Verhaaren,et al.  Common variants at 6p21.1 are associated with large artery atherosclerotic stroke , 2012, Nature Genetics.

[29]  M. Dichgans,et al.  Current concepts and clinical applications of stroke genetics , 2014, The Lancet Neurology.

[30]  D. Wendler,et al.  Research advance directives: protection or obstacle? , 2005, The American journal of psychiatry.

[31]  Philippe Amouyel,et al.  From genes to stroke subtypes , 2012, The Lancet Neurology.

[32]  A J Marian,et al.  Strategic approaches to unraveling genetic causes of cardiovascular diseases. , 2011, Circulation research.

[33]  D. Hanley,et al.  The Modified Graeb Score: An Enhanced Tool for Intraventricular Hemorrhage Measurement and Prediction of Functional Outcome , 2013, Stroke.

[34]  Steven C. Cramer Repairing the human brain after stroke: I. Mechanisms of spontaneous recovery , 2008, Annals of neurology.

[35]  Eric E. Smith,et al.  Prediction of Functional Outcome in Patients With Primary Intracerebral Hemorrhage: The FUNC Score , 2008, Stroke.

[36]  Robert D. Brown,et al.  Stroke Genetic Research and Adults With Impaired Decision-Making Capacity: A Survey of IRB and Investigator Practices , 2008, Stroke.

[37]  M. Nalls,et al.  The Effect of Survival Bias on Case-Control Genetic Association Studies of Highly Lethal Diseases , 2011, Circulation. Cardiovascular genetics.

[38]  Nick C Fox,et al.  Neuroimaging standards for research into small vessel disease and its contribution to ageing and neurodegeneration , 2013, The Lancet Neurology.