edge : Extraction of Differential Gene Expression Version 2 . 8 . 0

Note: edge was first released in 2005 and described in the publication Leek et al. (2006). It was an independently released R package by the John Storey Lab, which included multi-threading and a graph-ical user interface. However, the current version is now available through Bioconductor as a standard R package.

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[8]  John D. Storey.  The optimal discovery procedure: a new approach to simultaneous significance testing , 2007 .

[9]  John D. Storey,et al.  Capturing Heterogeneity in Gene Expression Studies by Surrogate Variable Analysis , 2007, PLoS genetics.

[10]  Jeffrey T Leek,et al.  The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments. , 2007, Biostatistics.

[11]  Jeffrey T Leek,et al.  A general framework for multiple testing dependence , 2008, Proceedings of the National Academy of Sciences.

[12]  John D. Storey,et al.  A Genome-Wide Gene Expression Signature of Environmental Geography in Leukocytes of Moroccan Amazighs , 2008, PLoS genetics.

[13]  John D. Storey,et al.  Supervised normalization of microarrays , 2010, Bioinform..

[14]  Jeffrey T. Leek,et al.  A computationally efficient modular optimal discovery procedure , 2011, Bioinform..