Muscleblind proteins regulate alternative splicing

Although the muscleblind (MBNL) protein family has been implicated in myotonic dystrophy (DM), a specific function for these proteins has not been reported. A key feature of the RNA‐mediated pathogenesis model for DM is the disrupted splicing of specific pre‐mRNA targets. Here we demonstrate that MBNL proteins regulate alternative splicing of two pre‐mRNAs that are misregulated in DM, cardiac troponin T (cTNT) and insulin receptor (IR). Alternative cTNT and IR exons are also regulated by CELF proteins, which were previously implicated in DM pathogenesis. MBNL proteins promote opposite splicing patterns for cTNT and IR alternative exons, both of which are antagonized by CELF proteins. CELF‐ and MBNL‐binding sites are distinct and regulation by MBNL does not require the CELF‐binding site. The results are consistent with a mechanism for DM pathogenesis in which expanded repeats cause a loss of MBNL and/or gain of CELF activities, leading to misregulation of alternative splicing of specific pre‐mRNA targets.

[1]  T. Ashizawa,et al.  An unstable triplet repeat in a gene related to myotonic muscular dystrophy. , 1992, Science.

[2]  C. Amemiya,et al.  Myotonic dystrophy mutation: an unstable CTG repeat in the 3' untranslated region of the gene. , 1992, Science.

[3]  David E. Housman,et al.  Molecular basis of myotonic dystrophy: Expansion of a trinucleotide (CTG) repeat at the 3′ end of a transcript encoding a protein kinase family member , 1992, Cell.

[4]  T. Cooper,et al.  The cardiac troponin T alternative exon contains a novel purine-rich positive splicing element , 1993, Molecular and cellular biology.

[5]  D. Housman,et al.  Foci of trinucleotide repeat transcripts in nuclei of myotonic dystrophy cells and tissues , 1995, The Journal of cell biology.

[6]  P. Tolias,et al.  Cleavage of RNA hairpins mediated by a developmentally regulated CCCH zinc finger protein , 1996, Molecular and cellular biology.

[7]  T. Cooper,et al.  Muscle-specific splicing enhancers regulate inclusion of the cardiac troponin T alternative exon in embryonic skeletal muscle , 1996, Molecular and cellular biology.

[8]  I. Kiss,et al.  muscleblind, a gene required for photoreceptor differentiation in Drosophila, encodes novel nuclear Cys3His-type zinc-finger-containing proteins. , 1997, Development.

[9]  M. Ashiya,et al.  A neuron-specific splicing switch mediated by an array of pre-mRNA repressor sites: evidence of a regulatory role for the polypyrimidine tract binding protein and a brain-specific PTB counterpart. , 1997, RNA.

[10]  R. C. Chan,et al.  The polypyrimidine tract binding protein binds upstream of neural cell-specific c-src exon N1 to repress the splicing of the intron downstream , 1997, Molecular and cellular biology.

[11]  D. Housman,et al.  Expansion of a CUG trinucleotide repeat in the 3' untranslated region of myotonic dystrophy protein kinase transcripts results in nuclear retention of transcripts. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[12]  A Prokop,et al.  The muscleblind gene participates in the organization of Z-bands and epidermal attachments of Drosophila muscles and is regulated by Dmef2. , 1998, Developmental biology.

[13]  P. Tolias,et al.  Drosophila clipper/CPSF 30K is a post-transcriptionally regulated nuclear protein that binds RNA containing GC clusters. , 1998, Nucleic acids research.

[14]  T. Cooper,et al.  Disruption of splicing regulated by a CUG-binding protein in myotonic dystrophy. , 1998, Science.

[15]  A. Kosaki,et al.  Identification of Intron and Exon Sequences Involved in Alternative Splicing of Insulin Receptor Pre-mRNA* , 1998, The Journal of Biological Chemistry.

[16]  T. Cooper Muscle-Specific Splicing of a Heterologous Exon Mediated by a Single Muscle-Specific Splicing Enhancer from the Cardiac Troponin T Gene , 1998, Molecular and Cellular Biology.

[17]  A. Welm,et al.  CUG repeat binding protein (CUGBP1) interacts with the 5'''' region of C/EBPβ β β β mRNA and regulates translation of C/EBPβ , 1999 .

[18]  P. Blackshear,et al.  Evidence that Tristetraprolin Binds to AU-Rich Elements and Promotes the Deadenylation and Destabilization of Tumor Necrosis Factor Alpha mRNA , 1999, Molecular and Cellular Biology.

[19]  A. Welm,et al.  CUG repeat binding protein (CUGBP1) interacts with the 5' region of C/EBPbeta mRNA and regulates translation of C/EBPbeta isoforms. , 1999, Nucleic acids research.

[20]  S. Stamm,et al.  Regulation of the neuron-specific exon of clathrin light chain B. , 1999, Brain research. Molecular brain research.

[21]  P. Grabowski,et al.  Coordinate repression of a trio of neuron-specific splicing events by the splicing regulator PTB. , 1999, RNA.

[22]  M. Swanson,et al.  Visualization of double-stranded RNAs from the myotonic dystrophy protein kinase gene and interactions with CUG-binding protein. , 1999, Nucleic acids research.

[23]  R. J. White,et al.  Myotonic dystrophy in transgenic mice expressing an expanded CUG repeat. , 2000, Science.

[24]  B. Byrne,et al.  Recruitment of human muscleblind proteins to (CUG)n expansions associated with myotonic dystrophy , 2000, The EMBO journal.

[25]  P. Good,et al.  A Family of Human RNA-binding Proteins Related to theDrosophila Bruno Translational Regulator* , 2000, The Journal of Biological Chemistry.

[26]  R. Darnell,et al.  A brain-enriched polypyrimidine tract-binding protein antagonizes the ability of Nova to regulate neuron-specific alternative splicing. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[27]  G. Fuller,et al.  Fibroblast growth factor receptor-1 alpha-exon exclusion and polypyrimidine tract-binding protein in glioblastoma multiforme tumors. , 2000, Cancer research.

[28]  T. Cooper,et al.  Aberrant regulation of insulin receptor alternative splicing is associated with insulin resistance in myotonic dystrophy , 2001, Nature Genetics.

[29]  A. Delacourte,et al.  Dysregulation of human brain microtubule-associated tau mRNA maturation in myotonic dystrophy type 1. , 2001, Human molecular genetics.

[30]  T. Cooper,et al.  The CELF Family of RNA Binding Proteins Is Implicated in Cell-Specific and Developmentally Regulated Alternative Splicing , 2001, Molecular and Cellular Biology.

[31]  S. Naylor,et al.  Myotonic Dystrophy Type 2 Caused by a CCTG Expansion in Intron 1 of ZNF9 , 2001, Science.

[32]  T. Ashizawa,et al.  RNA CUG Repeats Sequester CUGBP1 and Alter Protein Levels and Activity of CUGBP1* , 2001, The Journal of Biological Chemistry.

[33]  J. David Brook,et al.  In vivo co-localisation of MBNL protein with DMPK expanded-repeat transcripts , 2001, Nucleic Acids Res..

[34]  T. Tuschl,et al.  Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells , 2001, Nature.

[35]  M. Swanson,et al.  Muscleblind localizes to nuclear foci of aberrant RNA in myotonic dystrophy types 1 and 2. , 2001, Human molecular genetics.

[36]  T. Cooper,et al.  Dynamic antagonism between ETR-3 and PTB regulates cell type-specific alternative splicing. , 2002, Molecular cell.

[37]  Marco Colombi,et al.  Functional cloning of BRF1, a regulator of ARE‐dependent mRNA turnover , 2002, The EMBO journal.

[38]  J. Mandel,et al.  Muscle-specific alternative splicing of myotubularin-related 1 gene is impaired in DM1 muscle cells. , 2002, Human molecular genetics.

[39]  S. Cannon,et al.  Expanded CUG repeats trigger aberrant splicing of ClC-1 chloride channel pre-mRNA and hyperexcitability of skeletal muscle in myotonic dystrophy. , 2002, Molecular cell.

[40]  T. Cooper,et al.  Loss of the muscle-specific chloride channel in type 1 myotonic dystrophy due to misregulated alternative splicing. , 2002, Molecular cell.

[41]  D. M. Chenault,et al.  Inhibition of muscle differentiation by the novel muscleblind-related protein CHCR. , 2002, Developmental biology.

[42]  E. Wagner,et al.  RNAi-mediated PTB depletion leads to enhanced exon definition. , 2002, Molecular cell.

[43]  P. Harper,et al.  Three proteins, MBNL, MBLL and MBXL, co-localize in vivo with nuclear foci of expanded-repeat transcripts in DM1 and DM2 cells. , 2002, Human molecular genetics.

[44]  D. Black Mechanisms of alternative pre-messenger RNA splicing. , 2003, Annual review of biochemistry.

[45]  Naohiro Kato,et al.  Two RNA binding proteins, HEN4 and HUA1, act in the processing of AGAMOUS pre-mRNA in Arabidopsis thaliana. , 2003, Developmental cell.

[46]  J. Berg,et al.  Selective RNA binding by a single CCCH zinc-binding domain from Nup475 (Tristetraprolin). , 2003, Biochemistry.

[47]  T. Cooper,et al.  Pre-mRNA splicing and human disease. , 2003, Genes & development.

[48]  Alan Herbert,et al.  The four Rs of RNA-directed evolution , 2003, Nature Genetics.

[49]  D. Mukhopadhyay,et al.  Coupled mRNA stabilization and translational silencing of cyclooxygenase-2 by a novel RNA binding protein, CUGBP2. , 2003, Molecular cell.

[50]  W. Hauswirth,et al.  A Muscleblind Knockout Model for Myotonic Dystrophy , 2003, Science.

[51]  Jacek Krol,et al.  RNA structure of trinucleotide repeats associated with human neurological diseases. , 2003, Nucleic acids research.

[52]  T. Cooper,et al.  ETR-3 and CELF4 protein domains required for RNA binding and splicing activity in vivo. , 2004, Nucleic acids research.

[53]  Y. Kino,et al.  Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. , 2004, Human molecular genetics.

[54]  T. Cooper,et al.  CELF6, a Member of the CELF Family of RNA-binding Proteins, Regulates Muscle-specific Splicing Enhancer-dependent Alternative Splicing* , 2004, Journal of Biological Chemistry.

[55]  T. Cooper,et al.  Insulin receptor splicing alteration in myotonic dystrophy type 2. , 2004, American journal of human genetics.

[56]  L. Machuca-Tzili Molecular basis of myotonic dystrophy. , 2005 .