Free energy analysis of vesicle-to-bicelle transformation
暂无分享,去创建一个
Wataru Shinoda | Steven O. Nielsen | Takenobu Nakamura | W. Shinoda | S. Nielsen | Takenobu Nakamura
[1] Siewert J Marrink,et al. Lipids on the move: simulations of membrane pores, domains, stalks and curves. , 2009, Biochimica et biophysica acta.
[2] Siewert J Marrink,et al. Molecular dynamics simulations of hydrophilic pores in lipid bilayers. , 2004, Biophysical journal.
[3] Masuhiro Mikami,et al. Rigid‐body dynamics in the isothermal‐isobaric ensemble: A test on the accuracy and computational efficiency , 2003, J. Comput. Chem..
[4] E. Evans,et al. Effect of chain length and unsaturation on elasticity of lipid bilayers. , 2000, Biophysical journal.
[5] G. Peters,et al. Methodological problems in pressure profile calculations for lipid bilayers. , 2005, The Journal of chemical physics.
[6] D. Marsh,et al. Elastic curvature constants of lipid monolayers and bilayers. , 2006, Chemistry and physics of lipids.
[7] Wataru Shinoda,et al. Coarse-grained potential models for phenyl-based molecules: II. Application to fullerenes. , 2010, The journal of physical chemistry. B.
[8] Udo Seifert,et al. Configurations of fluid membranes and vesicles , 1997 .
[9] Wataru Shinoda,et al. Multi-property fitting and parameterization of a coarse grained model for aqueous surfactants , 2007 .
[10] C. Brooks. Computer simulation of liquids , 1989 .
[11] P. Moore,et al. A mean field approach for computing solid-liquid surface tension for nanoscale interfaces. , 2010, The Journal of chemical physics.
[12] F. Young. Biochemistry , 1955, The Indian Medical Gazette.
[13] Y. Bouret,et al. Molecular dynamics simulations of the lipid bilayer edge. , 2004, Biophysical journal.
[14] M. Parrinello,et al. Polymorphic transitions in single crystals: A new molecular dynamics method , 1981 .
[15] W. Briels,et al. Free energy of a trans-membrane pore calculated from atomistic molecular dynamics simulations. , 2006, The Journal of chemical physics.
[16] T. Ikeshoji,et al. Microscopic pressure tensor for hard-sphere fluids. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.
[17] Olivier Sandre,et al. Cascades of transient pores in giant vesicles: line tension and transport. , 2003, Biophysical journal.
[18] M. Klein,et al. Nosé-Hoover chains : the canonical ensemble via continuous dynamics , 1992 .
[19] P. Fromherz,et al. From discoid micelles to spherical vesicles. The concept of edge activity , 1986 .
[20] Wataru Shinoda,et al. Coarse-grained potential models for phenyl-based molecules: I. Parametrization using experimental data. , 2010, The journal of physical chemistry. B.
[21] C Sauterey,et al. Osmotic pressure induced pores in phospholipid vesicles. , 1975, Biochemistry.
[22] Wataru Shinoda,et al. A Transferable Coarse Grain Non-bonded Interaction Model For Amino Acids. , 2009, Journal of chemical theory and computation.
[23] Wataru Shinoda,et al. Large-Scale Molecular Dynamics Simulations of Self-Assembling Systems , 2008, Science.
[24] D. Zhelev,et al. Tension-stabilized pores in giant vesicles: determination of pore size and pore line tension. , 1993, Biochimica et biophysica acta.
[25] A. Gliozzi,et al. Electroporation in symmetric and asymmetric membranes. , 1993, Biochimica et biophysica acta.
[26] Mark E. Tuckerman,et al. Explicit reversible integrators for extended systems dynamics , 1996 .
[27] Grace Brannigan,et al. A consistent model for thermal fluctuations and protein-induced deformations in lipid bilayers. , 2006, Biophysical journal.
[28] Wataru Shinoda,et al. Zwitterionic lipid assemblies: molecular dynamics studies of monolayers, bilayers, and vesicles using a new coarse grain force field. , 2010, The journal of physical chemistry. B.
[29] Wataru Shinoda,et al. Coarse-grained molecular modeling of non-ionic surfactant self-assembly , 2008 .
[30] M. Kozlov,et al. The shape of lipid molecules and monolayer membrane fusion , 1985 .
[31] T. V. Tolpekina,et al. Nucleation free energy of pore formation in an amphiphilic bilayer studied by molecular dynamics simulations. , 2004, The Journal of chemical physics.
[32] Pore nucleation in mechanically stretched bilayer membranes. , 2005, The Journal of chemical physics.
[33] H. C. Andersen. Molecular dynamics simulations at constant pressure and/or temperature , 1980 .
[34] John F. Nagle,et al. Structure of Fully Hydrated Fluid Phase Lipid Bilayers with Monounsaturated Chains , 2006, The Journal of Membrane Biology.
[35] P. Fromherz. Lipid-vesicle structure: Size control by edge-active agents , 1983 .
[36] T. V. Tolpekina,et al. Simulations of stable pores in membranes: system size dependence and line tension. , 2004, The Journal of chemical physics.