Mapping the deformability of natural and designed cellulosomes in solution
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B. Różycki | E. Bayer | I. Mizrahi | M. Czjzek | Pierre-André Cazade | Damien Thompson | A. Labourel | Sarah Moraïs | J. Dabin | A. Thureau | J. Dorival | Eva Setter‐Lamed
[1] M. Vendruscolo,et al. Sequence-Based Prediction of Fuzzy Protein Interactions , 2020 .
[2] M. Vendruscolo,et al. Sequence-based determinants and prediction of fuzzy interactions in protein complexes. , 2020, Journal of molecular biology.
[3] Sean P. Gilmore,et al. Designing chimeric enzymes inspired by fungal cellulosomes , 2020, Synthetic and systems biotechnology.
[4] B. Henrissat,et al. The Cellulosome Paradigm in An Extreme Alkaline Environment , 2019, Microorganisms.
[5] C. S. Lin,et al. Substrate-Related Factors Affecting Cellulosome-Induced Hydrolysis for Lignocellulose Valorization , 2019, International journal of molecular sciences.
[6] I. Malavazi,et al. Extracellular vesicles carry cellulases in the industrial fungus Trichoderma reesei , 2019, Biotechnology for Biofuels.
[7] Junichi Higo,et al. Studies on Molecular Dynamics of Intrinsically Disordered Proteins and Their Fuzzy Complexes: A Mini-Review , 2019, Computational and structural biotechnology journal.
[8] Neal N. Hengge,et al. Creation of a functional hyperthermostable designer cellulosome , 2019, Biotechnology for Biofuels.
[9] S. Pantano,et al. The SIRAH 2.0 Force Field: Altius, Fortius, Citius. , 2019, Journal of chemical theory and computation.
[10] E. Bayer,et al. On the distinct binding modes of expansin and carbohydrate-binding module proteins on crystalline and nanofibrous cellulose: implications for cellulose degradation by designer cellulosomes. , 2018, Physical chemistry chemical physics : PCCP.
[11] E. Bayer,et al. Structure–function analyses generate novel specificities to assemble the components of multienzyme bacterial cellulosome complexes , 2018, The Journal of Biological Chemistry.
[12] B. Henrissat,et al. Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme , 2017, Microorganisms.
[13] Sagar M. Utturkar,et al. Unique organization and unprecedented diversity of the Bacteroides (Pseudobacteroides) cellulosolvens cellulosome system , 2017, Biotechnology for Biofuels.
[14] B. Pletschke,et al. Time dependence of enzyme synergism during the degradation of model and natural lignocellulosic substrates. , 2017, Enzyme and microbial technology.
[15] E. Bayer,et al. Continually emerging mechanistic complexity of the multi-enzyme cellulosome complex. , 2017, Current opinion in structural biology.
[16] E. Bayer. Cellulosomes and designer cellulosomes: why toy with Nature? , 2017, Environmental microbiology reports.
[17] E. Bayer,et al. Lysozyme activity of the Ruminococcus champanellensis cellulosome. , 2016, Environmental microbiology.
[18] B. Różycki,et al. Stiffness of the C-terminal disordered linker affects the geometry of the active site in endoglucanase Cel8A. , 2016, Molecular bioSystems.
[19] M. Cieplak,et al. Nanoscale Engineering of Designer Cellulosomes , 2016, Advanced materials.
[20] Sergio Pantano,et al. SIRAH tools: mapping, backmapping and visualization of coarse-grained models , 2016, Bioinform..
[21] E. Bayer,et al. Adaptor Scaffoldins: An Original Strategy for Extended Designer Cellulosomes, Inspired from Nature , 2016, mBio.
[22] Thibault Annaval,et al. Characterization of Intersubunit Communication in the Virginiamycin trans-Acyl Transferase Polyketide Synthase. , 2016, Journal of the American Chemical Society.
[23] Rafael C Bernardi,et al. Cellulose degradation in the human gut: Ruminococcus champanellensis expands the cellulosome paradigm. , 2016, Environmental microbiology.
[24] E. Bayer,et al. Enzymatic profiling of cellulosomal enzymes from the human gut bacterium, Ruminococcus champanellensis, reveals a fine-tuned system for cohesin-dockerin recognition. , 2016, Environmental microbiology.
[25] B. L. de Groot,et al. Structural Ensembles of Intrinsically Disordered Proteins Depend Strongly on Force Field: A Comparison to Experiment. , 2015, Journal of chemical theory and computation.
[26] E. Bayer,et al. Reassembly and co-crystallization of a family 9 processive endoglucanase from its component parts: structural and functional significance of the intermodular linker , 2015, PeerJ.
[27] Berk Hess,et al. GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers , 2015 .
[28] B. White,et al. Ruminococcal cellulosome systems from rumen to human. , 2015, Environmental microbiology.
[29] Klaus Schulten,et al. Mapping Mechanical Force Propagation through Biomolecular Complexes. , 2015, Nano letters.
[30] Marek Cieplak,et al. Large conformational fluctuations of the multi-domain xylanase Z of Clostridium thermocellum. , 2015, Journal of structural biology.
[31] Carsten Kutzner,et al. Tackling Exascale Software Challenges in Molecular Dynamics Simulations with GROMACS , 2015, EASC.
[32] Johanna Stern,et al. Significance of Relative Position of Cellulases in Designer Cellulosomes for Optimized Cellulolysis , 2015, PloS one.
[33] A. Bhattacharya,et al. Synergism of fungal and bacterial cellulases and hemicellulases: a novel perspective for enhanced bio-ethanol production , 2015, Biotechnology Letters.
[34] Leonardo Darré,et al. SIRAH: a structurally unbiased coarse-grained force field for proteins with aqueous solvation and long-range electrostatics. , 2015, Journal of chemical theory and computation.
[35] P. B. Pope,et al. A Polysaccharide Utilization Locus from an Uncultured Bacteroidetes Phylotype Suggests Ecological Adaptation and Substrate Versatility , 2014, Applied and Environmental Microbiology.
[36] E. Bayer,et al. Cellulosomics of the cellulolytic thermophile Clostridium clariflavum , 2014, Biotechnology for Biofuels.
[37] E. Shapiro,et al. A synthetic biology approach for evaluating the functional contribution of designer cellulosome components to deconstruction of cellulosic substrates , 2013, Biotechnology for Biofuels.
[38] Edward A. Bayer,et al. Unraveling enzyme discrimination during cellulosome assembly independent of cohesin–dockerin affinity , 2013, The FEBS journal.
[39] Dmitri I. Svergun,et al. Small Angle X-Ray and Neutron Scattering from Solutions of Biological Macromolecules , 2013 .
[40] E. Bayer,et al. Insights into cellulosome assembly and dynamics: from dissection to reconstruction of the supramolecular enzyme complex. , 2013, Current opinion in structural biology.
[41] John A. Tainer,et al. Accurate assessment of mass, models and resolution by small-angle scattering , 2013, Nature.
[42] Peter M. Kasson,et al. GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit , 2013, Bioinform..
[43] E. Bayer,et al. Small Angle X-ray Scattering Analysis of Clostridium thermocellum Cellulosome N-terminal Complexes Reveals a Highly Dynamic Structure* , 2013, The Journal of Biological Chemistry.
[44] P. Väljamäe,et al. Endo-exo Synergism in Cellulose Hydrolysis Revisited* , 2012, The Journal of Biological Chemistry.
[45] E. Bayer,et al. Scaffoldin Conformation and Dynamics Revealed by a Ternary Complex from the Clostridium thermocellum Cellulosome* , 2012, The Journal of Biological Chemistry.
[46] Maxim V. Petoukhov,et al. New developments in the ATSAS program package for small-angle scattering data analysis , 2012, Journal of applied crystallography.
[47] Dominique Durand,et al. How Random are Intrinsically Disordered Proteins? A Small Angle Scattering Perspective , 2012, Current protein & peptide science.
[48] Gerhard Hummer,et al. Structural basis of p38α regulation by hematopoietic tyrosine phosphatase. , 2011, Nature chemical biology.
[49] B. Pletschke,et al. Synergy between EngE, XynA and ManA from Clostridium cellulovorans on corn stalk, grass and pineapple pulp substrates , 2011, 3 Biotech.
[50] Gerhard Hummer,et al. Solution structure of the ESCRT-I complex by small-angle X-ray scattering, EPR, and FRET spectroscopy , 2011, Proceedings of the National Academy of Sciences.
[51] R. Melero,et al. Molecular architecture and structural transitions of a Clostridium thermocellum mini-cellulosome. , 2011, Journal of molecular biology.
[52] Greg L. Hura,et al. X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution. , 2011, Quarterly reviews of biophysics.
[53] G. Hummer,et al. SAXS ensemble refinement of ESCRT-III CHMP3 conformational transitions. , 2011, Structure.
[54] H. Fierobe,et al. Synergy, structure and conformational flexibility of hybrid cellulosomes displaying various inter-cohesins linkers. , 2011, Journal of molecular biology.
[55] Gregg T Beckham,et al. Modeling the Self-assembly of the Cellulosome Enzyme Complex* , 2010, The Journal of Biological Chemistry.
[56] E. Bayer,et al. Interplay between Clostridium thermocellum Family 48 and Family 9 Cellulases in Cellulosomal versus Noncellulosomal States , 2010, Applied and Environmental Microbiology.
[57] E. Bayer,et al. Insights into higher-order organization of the cellulosome revealed by a dissect-and-build approach: crystal structure of interacting Clostridium thermocellum multimodular components. , 2010, Journal of molecular biology.
[58] G. Harauz,et al. Fuzzy complexes of myelin basic protein: NMR spectroscopic investigations of a polymorphic organizational linker of the central nervous system. , 2010, Biochemistry and cell biology = Biochimie et biologie cellulaire.
[59] G. David,et al. Combined sampler robot and high-performance liquid chromatography: a fully automated system for biological small-angle X-ray scattering experiments at the Synchrotron SOLEIL SWING beamline , 2009 .
[60] E. Bayer,et al. Intermodular linker flexibility revealed from crystal structures of adjacent cellulosomal cohesins of Acetivibrio cellulolyticus. , 2009, Journal of molecular biology.
[61] I. Cann,et al. Enzymatic deconstruction of xylan for biofuel production , 2009, Global change biology. Bioenergy.
[62] Carsten Kutzner,et al. GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation. , 2008, Journal of chemical theory and computation.
[63] Gerhard Hummer,et al. Coarse-grained models for simulations of multiprotein complexes: application to ubiquitin binding. , 2008, Journal of molecular biology.
[64] M. Parrinello,et al. Canonical sampling through velocity rescaling. , 2007, The Journal of chemical physics.
[65] Gerrit Groenhof,et al. GROMACS: Fast, flexible, and free , 2005, J. Comput. Chem..
[66] Jeremy C. Smith,et al. Structural Basis of Cellulosome Efficiency Explored by Small Angle X-ray Scattering* , 2005, Journal of Biological Chemistry.
[67] E. Bayer,et al. Action of Designer Cellulosomes on Homogeneous Versus Complex Substrates , 2005, Journal of Biological Chemistry.
[68] M. Hammel,et al. Structural Insights into the Mechanism of Formation of Cellulosomes Probed by Small Angle X-ray Scattering* , 2004, Journal of Biological Chemistry.
[69] E. Bayer,et al. The cellulosomes: multienzyme machines for degradation of plant cell wall polysaccharides. , 2004, Annual review of microbiology.
[70] F. Mayer,et al. Structural organization of the intact bacterial cellulosome as revealed by electron microscopy , 2003, Cell biology international.
[71] Dmitri I. Svergun,et al. PRIMUS: a Windows PC-based system for small-angle scattering data analysis , 2003 .
[72] R. Haser,et al. X-Ray Crystal Structure of the Multidomain Endoglucanase Cel9G from Clostridium cellulolyticum Complexed with Natural and Synthetic Cello-Oligosaccharides , 2003, Journal of bacteriology.
[73] Dmitri I. Svergun,et al. Uniqueness of ab initio shape determination in small-angle scattering , 2003 .
[74] P. Alzari,et al. The crystal structure and catalytic mechanism of cellobiohydrolase CelS, the major enzymatic component of the Clostridium thermocellum Cellulosome. , 2002, Journal of molecular biology.
[75] Berk Hess,et al. GROMACS 3.0: a package for molecular simulation and trajectory analysis , 2001 .
[76] D I Svergun,et al. Determination of domain structure of proteins from X-ray solution scattering. , 2001, Biophysical journal.
[77] Dmitri I. Svergun,et al. Automated matching of high- and low-resolution structural models , 2001 .
[78] D I Svergun,et al. Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing. , 1999, Biophysical journal.
[79] P. Karplus,et al. Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca , 1997, Nature Structural Biology.
[80] P Béguin,et al. A new type of cohesin domain that specifically binds the dockerin domain of the Clostridium thermocellum cellulosome-integrating protein CipA , 1996, Journal of bacteriology.
[81] D. Svergun,et al. CRYSOL : a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates , 1995 .
[82] D. van der Spoel,et al. GROMACS: A message-passing parallel molecular dynamics implementation , 1995 .
[83] Janet L. Schottel,et al. A novel variant of the catalytic triad in the Streptomyces scabies esterase , 1995, Nature Structural Biology.
[84] E. Bayer,et al. The cellulosome--a treasure-trove for biotechnology. , 1994, Trends in biotechnology.
[85] E. Bayer,et al. The nature of the carbohydrate-peptide linkage region in glycoproteins from the cellulosomes of Clostridium thermocellum and Bacteroides cellulosolvens. , 1993, The Journal of biological chemistry.
[86] Dmitri I. Svergun,et al. Determination of the regularization parameter in indirect-transform methods using perceptual criteria , 1992 .
[87] E. Bayer,et al. Novel O-linked carbohydrate chains in the cellulase complex (cellulosome) of Clostridium thermocellum. 3-O-Methyl-N-acetylglucosamine as a constituent of a glycoprotein. , 1989, The Journal of biological chemistry.
[88] Michael P. Coughlan,et al. Macromolecular Organization of the Cellulolytic Enzyme Complex of Clostridium thermocellum as Revealed by Electron Microscopy , 1987, Applied and environmental microbiology.
[89] H. Berendsen,et al. Molecular dynamics with coupling to an external bath , 1984 .
[90] M. Parrinello,et al. Polymorphic transitions in single crystals: A new molecular dynamics method , 1981 .
[91] J. Henzen. Publisher's note , 1979, Brain Research.
[92] E. Bayer,et al. Designer cellulosomes for enhanced hydrolysis of cellulosic substrates. , 2012, Methods in enzymology.
[93] P. Lawson,et al. Ruminococcus champanellensis sp. nov., a cellulose-degrading bacterium from human gut microbiota. , 2012, International journal of systematic and evolutionary microbiology.
[94] Berk Hess,et al. P-LINCS: A Parallel Linear Constraint Solver for Molecular Simulation. , 2008, Journal of chemical theory and computation.
[95] D Vanderspoel,et al. GROMACS - A PARALLEL COMPUTER FOR MOLECULAR-DYNAMICS SIMULATIONS , 1993 .