Lose the Views: Limited Angle CT Reconstruction via Implicit Sinogram Completion

Computed Tomography (CT) reconstruction is a fundamental component to a wide variety of applications ranging from security, to healthcare. The classical techniques require measuring projections, called sinograms, from a full 180° view of the object. However, obtaining a full-view is not always feasible, such as when scanning irregular objects that limit flexibility of scanner rotation. The resulting limited angle sinograms are known to produce highly artifact-laden reconstructions with existing techniques. In this paper, we propose to address this problem using CTNet - a system of 1D and 2D convolutional neural networks, that operates directly on a limited angle sinogram to predict the reconstruction. We use the x-ray transform on this prediction to obtain a "completed" sinogram, as if it came from a full 180°view. We feed this to standard analytical and iterative reconstruction techniques to obtain the final reconstruction. We show with extensive experimentation on a challenging real world dataset that this combined strategy outperforms many competitive baselines. We also propose a measure of confidence for the reconstruction that enables a practitioner to gauge the reliability of a prediction made by CTNet. We show that this measure is a strong indicator of quality as measured by the PSNR, while not requiring ground truth at test time. Finally, using a segmentation experiment, we show that our reconstruction also preserves the 3D structure of objects better than existing solutions.

[1]  Charles A. Bouman,et al.  Submitted to Ieee Transactions on Image Processing 1 a Model Based Iterative Reconstruction Algorithm for High Angle Annular Dark Field -scanning Transmission Electron Microscope (haadf-stem) Tomography , 2022 .

[2]  M. Glas,et al.  Principles of Computerized Tomographic Imaging , 2000 .

[3]  Jeffrey A. Fessler,et al.  Motion-compensated image reconstruction for cardiac CT with sinogram-based motion estimation , 2013, 2013 IEEE Nuclear Science Symposium and Medical Imaging Conference (2013 NSS/MIC).

[4]  Hu Chen,et al.  Low-dose CT via convolutional neural network. , 2017, Biomedical optics express.

[5]  Jong Chul Ye,et al.  Framing U-Net via Deep Convolutional Framelets: Application to Sparse-View CT , 2017, IEEE Transactions on Medical Imaging.

[6]  Eric Todd Quinto,et al.  Characterization and reduction of artifacts in limited angle tomography , 2013 .

[7]  Roland Vollgraf,et al.  Fashion-MNIST: a Novel Image Dataset for Benchmarking Machine Learning Algorithms , 2017, ArXiv.

[8]  Michael Unser,et al.  Deep Convolutional Neural Network for Inverse Problems in Imaging , 2016, IEEE Transactions on Image Processing.

[9]  Alexander B. Konovalov,et al.  Few-Views Image Reconstruction with SMART and an Allowance for Contrast Structure Shadows , 2015, CAIP.

[10]  D. Kopans,et al.  Digital tomosynthesis in breast imaging. , 1997, Radiology.

[11]  Linghong Zhou,et al.  Few-view CT reconstruction via a novel non-local means algorithm. , 2016, Physica medica : PM : an international journal devoted to the applications of physics to medicine and biology : official journal of the Italian Association of Biomedical Physics.

[12]  Norbert J Pelc,et al.  Fourier properties of the fan-beam sinogram. , 2010, Medical physics.

[13]  Yoon Kim,et al.  Convolutional Neural Networks for Sentence Classification , 2014, EMNLP.

[14]  Pavan K. Turaga,et al.  ReconNet: Non-Iterative Reconstruction of Images from Compressively Sensed Measurements , 2016, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[15]  Jian Sun,et al.  Deep Residual Learning for Image Recognition , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[16]  Charles A. Bouman,et al.  TIMBIR: A Method for Time-Space Reconstruction From Interlaced Views , 2015, IEEE Transactions on Computational Imaging.

[17]  Lei Zhang,et al.  Low-Dose X-ray CT Reconstruction via Dictionary Learning , 2012, IEEE Transactions on Medical Imaging.

[18]  Alexei A. Efros,et al.  Context Encoders: Feature Learning by Inpainting , 2016, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[19]  Christian Ledig,et al.  Photo-Realistic Single Image Super-Resolution Using a Generative Adversarial Network , 2016, 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[20]  Hyojin Kim,et al.  A Randomized Ensemble Approach to Industrial CT Segmentation , 2015, 2015 IEEE International Conference on Computer Vision (ICCV).

[21]  Martín Abadi,et al.  TensorFlow: Large-Scale Machine Learning on Heterogeneous Distributed Systems , 2016, ArXiv.

[22]  Jong Chul Ye,et al.  A deep convolutional neural network using directional wavelets for low‐dose X‐ray CT reconstruction , 2016, Medical physics.

[23]  Bin Yan,et al.  Image Prediction for Limited-angle Tomography via Deep Learning with Convolutional Neural Network , 2016, ArXiv.

[24]  Joachim Hornegger,et al.  Restoration of missing data in limited angle tomography based on Helgason–Ludwig consistency conditions , 2017 .

[25]  Yoshua Bengio,et al.  Generative Adversarial Nets , 2014, NIPS.

[26]  P. Cochat,et al.  Et al , 2008, Archives de pediatrie : organe officiel de la Societe francaise de pediatrie.

[27]  Matti Lassas,et al.  Three-dimensional dental X-ray imaging by combination of panoramic and projection data , 2010 .

[28]  V. V. Vlasov,et al.  Spatial Resolution Analysis for Few-Views Discrete Tomography Based on MART-AP Algorithm , 2013 .

[29]  Yoram Bresler,et al.  Optimal scan for time-varying tomography. I. Theoretical analysis and fundamental limitations , 1995, IEEE Trans. Image Process..

[30]  Minh N. Do,et al.  Semantic Image Inpainting with Deep Generative Models , 2016, 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[31]  Ken D. Sauer,et al.  A unified approach to statistical tomography using coordinate descent optimization , 1996, IEEE Trans. Image Process..

[32]  Ge Wang,et al.  Few-view image reconstruction with dual dictionaries , 2012, Physics in medicine and biology.

[33]  Jimmy Ba,et al.  Adam: A Method for Stochastic Optimization , 2014, ICLR.

[34]  Zhiqiang Chen,et al.  Few-View CT reconstruction method based on deep learning , 2016, 2016 IEEE Nuclear Science Symposium, Medical Imaging Conference and Room-Temperature Semiconductor Detector Workshop (NSS/MIC/RTSD).

[35]  Chun-Liang Li,et al.  One Network to Solve Them All — Solving Linear Inverse Problems Using Deep Projection Models , 2017, 2017 IEEE International Conference on Computer Vision (ICCV).

[36]  E. T. Quinto,et al.  Local Tomography in Electron Microscopy , 2008, SIAM J. Appl. Math..

[37]  Minh N. Do,et al.  Semantic Image Inpainting with Perceptual and Contextual Losses , 2016, ArXiv.