Structural analysis of human alpha-class glutathione transferase A1-1 in the apo-form and in complexes with ethacrynic acid and its glutathione conjugate.

BACKGROUND Glutathione transferases (GSTs) constitute a family of isoenzymes that catalyze the conjugation of the tripeptide glutathione with a wide variety of hydrophobic compounds bearing an electrophilic functional group. Recently, a number of X-ray structures have been reported which have defined both the glutathione- and the substrate-binding sites in these enzymes. The structure of the glutathione-free enzyme from a mammalian source has not, however, been reported previously. RESULTS We have solved structures of a human alpha-class GST, isoenzyme A1-1, both in the unliganded form and in complexes with the inhibitor ethacrynic acid and its glutathione conjugate. These structures have been refined to resolutions of 2.5 A, 2.7 A and 2.0 A respectively. Both forms of the inhibitor are clearly present in the associated electron density. CONCLUSIONS The major differences among the three structures reported here involve the C-terminal alpha-helix, which is a characteristic of the alpha-class enzyme. This helix forms a lid over the active site when the hydrophobic substrate binding site (H-site) is occupied but it is otherwise disordered. Ethacrynic acid appears to bind in a non-productive mode in the absence of the coenzyme glutathione.

[1]  M. Parker,et al.  Structure and function of glutathione S-transferases. , 1994, Biochimica et biophysica acta.

[2]  Collaborative Computational,et al.  The CCP4 suite: programs for protein crystallography. , 1994, Acta crystallographica. Section D, Biological crystallography.

[3]  S. Cowan,et al.  Crystallization of GST2, a human class alpha glutathione transferase. , 1989, Journal of molecular biology.

[4]  F. C. Hartman,et al.  Structure of yeast triosephosphate isomerase at 1.9-A resolution. , 1990, Biochemistry.

[5]  P. van Bladeren,et al.  Ethacrynic acid and its glutathione conjugate as inhibitors of glutathione S-transferases. , 1993, Xenobiotica; the fate of foreign compounds in biological systems.

[6]  B. Ketterer,et al.  Theta, a new class of glutathione transferases purified from rat and man. , 1991, The Biochemical journal.

[7]  B. Mannervik The isoenzymes of glutathione transferase. , 2006, Advances in enzymology and related areas of molecular biology.

[8]  G. N. Ramachandran,et al.  Stereochemical criteria for polypeptide and protein chain conformations. II. Allowed conformations for a pair of peptide units. , 1965, Biophysical journal.

[9]  Y. Katsube,et al.  A High-Speed Data-Collection System for Large-Unit-Cell Crystals using an Imaging Plate as a Detector , 1992 .

[10]  G L Gilliland,et al.  Structure and function of the xenobiotic substrate binding site of a glutathione S-transferase as revealed by X-ray crystallographic analysis of product complexes with the diastereomers of 9-(S-glutathionyl)-10-hydroxy-9,10-dihydrophenanthrene. , 1993, Biochemistry.

[11]  B. Mannervik,et al.  Heterologous expression of recombinant human glutathione transferase A1-1 from a hepatoma cell line. , 1992, Protein expression and purification.

[12]  R. Huber,et al.  Accurate Bond and Angle Parameters for X-ray Protein Structure Refinement , 1991 .

[13]  G. Gilliland,et al.  Tyrosine 115 participates both in chemical and physical steps of the catalytic mechanism of a glutathione S-transferase. , 1993, The Journal of biological chemistry.

[14]  B. Mannervik,et al.  Glutathione transferases--structure and catalytic activity. , 1988, CRC critical reviews in biochemistry.

[15]  G. Kleywegt,et al.  Halloween ... Masks and Bones , 1994 .

[16]  M. Rossmann,et al.  Structure of the active ternary complex of pig heart lactate dehydrogenase with S-lac-NAD at 2.7 A resolution. , 1981, Journal of molecular biology.

[17]  B. Mannervik,et al.  Denitrosation of 1,3-bis(2-chloroethyl)-1-nitrosourea by class mu glutathione transferases and its role in cellular resistance in rat brain tumor cells. , 1989, Cancer research.

[18]  J. Hansson,et al.  Sensitization of human melanoma cells to the cytotoxic effect of melphalan by the glutathione transferase inhibitor ethacrynic acid. , 1991, Cancer research.

[19]  K. Tew Structure and function of glutathione transferases , 1993 .

[20]  B. Mannervik,et al.  Binary combinations of four protein subunits with different catalytic specificities explain the relationship between six basic glutathione S-transferases in rat liver cytosol. , 1982, The Journal of biological chemistry.

[21]  B. Mannervik,et al.  The contribution of the C-terminal sequence to the catalytic activity of GST2, a human alpha-class glutathione transferase. , 1991, The Biochemical journal.

[22]  R. Huber,et al.  X-ray crystal structures of cytosolic glutathione S-transferases. Implications for protein architecture, substrate recognition and catalytic function. , 1994, European journal of biochemistry.

[23]  G L Gilliland,et al.  The three-dimensional structure of a glutathione S-transferase from the mu gene class. Structural analysis of the binary complex of isoenzyme 3-3 and glutathione at 2.2-A resolution. , 1992, Biochemistry.

[24]  G L Gilliland,et al.  Snapshots along the reaction coordinate of an SNAr reaction catalyzed by glutathione transferase. , 1993, Biochemistry.

[25]  R. Ozols,et al.  Phase I study of thiotepa in combination with the glutathione transferase inhibitor ethacrynic acid. , 1991, Cancer Research.

[26]  P. van Bladeren,et al.  Quantification of human hepatic glutathione S-transferases. , 1990, The Biochemical journal.

[27]  H. Jörnvall,et al.  Identification of three classes of cytosolic glutathione transferase common to several mammalian species: correlation between structural data and enzymatic properties. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[28]  G J Kleywegt,et al.  Structure determination and refinement of human alpha class glutathione transferase A1-1, and a comparison with the Mu and Pi class enzymes. , 1993, Journal of molecular biology.

[29]  M W Parker,et al.  Three-dimensional structure of class pi glutathione S-transferase from human placenta in complex with S-hexylglutathione at 2.8 A resolution. , 1992, Journal of molecular biology.

[30]  R. Kretsinger,et al.  Crystal structure of human class mu glutathione transferase GSTM2-2. Effects of lattice packing on conformational heterogeneity. , 1994, Journal of molecular biology.

[31]  J. Zou,et al.  Improved methods for building protein models in electron density maps and the location of errors in these models. , 1991, Acta crystallographica. Section A, Foundations of crystallography.

[32]  R. Armstrong Glutathione S-transferases: reaction mechanism, structure, and function. , 1991, Chemical research in toxicology.

[33]  A. Brunger Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. , 1992 .

[34]  J. Thornton,et al.  Stereochemical quality of protein structure coordinates , 1992, Proteins.

[35]  K. Tew,et al.  Ethacrynic acid and piriprost as enhancers of cytotoxicity in drug resistant and sensitive cell lines. , 1988, Cancer research.

[36]  A T Brünger,et al.  Slow-cooling protocols for crystallographic refinement by simulated annealing. , 1990, Acta crystallographica. Section A, Foundations of crystallography.

[37]  A. Párraga,et al.  Molecular structure at 1.8 A of mouse liver class pi glutathione S-transferase complexed with S-(p-nitrobenzyl)glutathione and other inhibitors. , 1994, Journal of molecular biology.

[38]  M. Parker,et al.  Crystal structure of a theta‐class glutathione transferase. , 1995, The EMBO journal.

[39]  S. Tsuchida,et al.  Glutathione transferases and cancer. , 1992, Critical reviews in biochemistry and molecular biology.

[40]  J. Tainer,et al.  Crystal structures of a schistosomal drug and vaccine target: glutathione S-transferase from Schistosoma japonica and its complex with the leading antischistosomal drug praziquantel. , 1995, Journal of molecular biology.

[41]  A. Y. Lu,et al.  Glutathione S-transferases: gene structure, regulation, and biological function. , 1989, Annual review of biochemistry.

[42]  R. Huber,et al.  The three‐dimensional structure of class pi glutathione S‐transferase in complex with glutathione sulfonate at 2.3 A resolution. , 1991, The EMBO journal.

[43]  B. Mannervik,et al.  Effects of directed mutagenesis on conserved arginine residues in a human Class Alpha glutathione transferase. , 1991, The Biochemical journal.