Exometabolomics and MSI: deconstructing how cells interact to transform their small molecule environment.
暂无分享,去创建一个
[1] Theodore Alexandrov,et al. Metabolic profiling directly from the Petri dish using nanospray desorption electrospray ionization imaging mass spectrometry. , 2013, Analytical chemistry.
[2] Benjamin P Bowen,et al. Dealing with the unknown: Metabolomics and Metabolite Atlases , 2010, Journal of the American Society for Mass Spectrometry.
[3] Venkatesh Balan,et al. Comparative metabolic profiling revealed limitations in xylose‐fermenting yeast during co‐fermentation of glucose and xylose in the presence of inhibitors , 2014, Biotechnology and bioengineering.
[4] Benjamin P Bowen,et al. "Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria. , 2013, Analytical chemistry.
[5] R. Russo,et al. Laser-nanostructure interactions for ion production. , 2012, Physical chemistry chemical physics : PCCP.
[6] Manfred Auer,et al. Bacterial social networks: structure and composition of Myxococcus xanthus outer membrane vesicle chains. , 2014, Environmental microbiology.
[7] Ana P. Teixeira,et al. ¹H-NMR protocol for exometabolome analysis of cultured mammalian cells. , 2014, Methods in molecular biology.
[8] Eoin Fahy,et al. LIPID MAPS online tools for lipid research , 2007, Nucleic Acids Res..
[9] P. Dorrestein,et al. Imaging mass spectrometry in microbiology , 2011, Nature Reviews Microbiology.
[10] Oliver Rübel,et al. OpenMSI: a high-performance web-based platform for mass spectrometry imaging. , 2013, Analytical chemistry.
[11] Adam P. Arkin,et al. Evidence-Based Annotation of Gene Function in Shewanella oneidensis MR-1 Using Genome-Wide Fitness Profiling across 121 Conditions , 2011, PLoS genetics.
[12] P. Weber,et al. Phylogenetic Patterns in the Microbial Response to Resource Availability: Amino Acid Incorporation in San Francisco Bay , 2014, PloS one.
[13] Richard M Caprioli,et al. MALDI imaging mass spectrometry of human tissue: method challenges and clinical perspectives. , 2011, Trends in biotechnology.
[14] Oliver Fiehn,et al. LipidBlast - in-silico tandem mass spectrometry database for lipid identification , 2013, Nature Methods.
[15] D. Kell,et al. High-throughput classification of yeast mutants for functional genomics using metabolic footprinting , 2003, Nature Biotechnology.
[16] T. Northen,et al. High throughput screening of enzyme activity with mass spectrometry imaging. , 2015, Current opinion in biotechnology.
[17] M. Auer,et al. The lethal cargo of Myxococcus xanthus outer membrane vesicles , 2014, Front. Microbiol..
[18] A. Schintlmeister,et al. Revisiting N2 fixation in Guerrero Negro intertidal microbial mats with a functional single-cell approach , 2014, The ISME Journal.
[19] B. Kobe,et al. Structure-Informed Design of an Enzymatically Inactive Vaccine Component for Group A Streptococcus , 2013, mBio.
[20] R. Abagyan,et al. METLIN: A Metabolite Mass Spectral Database , 2005, Therapeutic drug monitoring.
[21] Paula M Alves,et al. Metabolic signatures of GS‐CHO cell clones associated with butyrate treatment and culture phase transition , 2013, Biotechnology and bioengineering.
[22] H. Mori,et al. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection , 2006, Molecular systems biology.
[23] S. Villas-Bôas,et al. An Exometabolomics Approach to Monitoring Microbial Contamination in Microalgal Fermentation Processes by Using Metabolic Footprint Analysis , 2011, Applied and Environmental Microbiology.
[24] P. Punt,et al. Exometabolomics Approaches in Studying the Application of Lignocellulosic Biomass as Fermentation Feedstock , 2013, Metabolites.
[25] G. Sherlock,et al. Comparative metabolic footprinting of a large number of commercial wine yeast strains in Chardonnay fermentations. , 2013, FEMS yeast research.
[26] V. Orphan,et al. Geobiological investigations using secondary ion mass spectrometry: microanalysis of extant and paleo‐microbial processes , 2009, Geobiology.
[27] T. Skov,et al. Liquid chromatography–mass spectrometry for metabolic footprinting of co-cultures of lactic and propionic acid bacteria , 2013, Analytical and Bioanalytical Chemistry.
[28] Richard M Caprioli,et al. Tissue Profiling by Mass Spectrometry , 2005, Molecular & Cellular Proteomics.
[29] Nuno Bandeira,et al. Interkingdom metabolic transformations captured by microbial imaging mass spectrometry , 2012, Proceedings of the National Academy of Sciences.
[30] I. Androulakis,et al. Metabolomic fingerprinting: challenges and opportunities. , 2013, Critical reviews in biomedical engineering.
[31] David S. Wishart,et al. HMDB: a knowledgebase for the human metabolome , 2008, Nucleic Acids Res..
[32] Samuel E. Senyo,et al. Quantitating subcellular metabolism with multi-isotope imaging mass spectrometry , 2011, Nature.
[33] A. Smilde,et al. Identifying inhibitory compounds in lignocellulosic biomass hydrolysates using an exometabolomics approach , 2014, BMC Biotechnology.
[34] P. Dorrestein,et al. Emerging mass spectrometry techniques for the direct analysis of microbial colonies. , 2014, Current opinion in microbiology.
[35] T. Northen,et al. Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002. , 2011, Molecular bioSystems.
[36] Oscar Yanes,et al. Nanostructure initiator mass spectrometry: tissue imaging and direct biofluid analysis. , 2009, Analytical chemistry.
[37] T. Northen,et al. Metabolic imaging using nanostructure-initiator mass spectrometry (NIMS). , 2014, Methods in molecular biology.
[38] Juan C Aon,et al. Exometabolome analysis reveals hypoxia at the up-scaling of a Saccharomyces cerevisiae high-cell density fed-batch biopharmaceutical process , 2014, Microbial Cell Factories.
[39] D. van Sinderen,et al. Progress in lactic acid bacterial phage research , 2014, Microbial Cell Factories.
[40] E. Schömig,et al. Increased ergothioneine tissue concentrations in carriers of the Crohn’s disease risk-associated 503F variant of the organic cation transporter OCTN1 , 2009, Gut.
[41] Gary Siuzdak,et al. Nanostructure-initiator mass spectrometry metabolite analysis and imaging. , 2011, Analytical chemistry.
[42] Ralf Tautenhahn,et al. An accelerated workflow for untargeted metabolomics using the METLIN database , 2012, Nature Biotechnology.
[43] J. Nielsen,et al. Dynamic Metabolic Footprinting Reveals the Key Components of Metabolic Network in Yeast Saccharomyces cerevisiae , 2014, International journal of genomics.
[44] S. Ward,et al. Metabolite footprinting of Plasmodium falciparum following exposure to Garcinia mangostana Linn. crude extract. , 2014, Experimental parasitology.
[45] Lubos Polerecky,et al. Oxygenic photosynthesis as a protection mechanism for cyanobacteria against iron-encrustation in environments with high Fe2+ concentrations , 2014, Front. Microbiol..
[46] P. Dorrestein,et al. Interspecies Interactions Stimulate Diversification of the Streptomyces coelicolor Secreted Metabolome , 2013, mBio.
[47] E. Ferreira,et al. Metabolic footprint analysis of recombinant Escherichia coli strains during fed-batch fermentations. , 2011, Molecular bioSystems.
[48] Richard Baran,et al. Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics , 2013, Marine drugs.
[49] N. Mosier,et al. Effect of salts on the Co-fermentation of glucose and xylose by a genetically engineered strain of Saccharomyces cerevisiae , 2013, Biotechnology for Biofuels.
[50] D. Hoyle,et al. Growth control of the eukaryote cell: a systems biology study in yeast , 2007, Journal of biology.
[51] Ralf J. M. Weber,et al. A Stable-Isotope Mass Spectrometry-Based Metabolic Footprinting Approach to Analyze Exudates from Phytoplankton , 2013, Marine drugs.
[52] E. Dudley. MALDI profiling and applications in medicine. , 2014, Advances in experimental medicine and biology.
[53] Richard Baran,et al. Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling. , 2010, Analytical chemistry.
[54] W. Dunn,et al. Measuring the metabolome: current analytical technologies. , 2005, The Analyst.
[55] V. Orphan,et al. Micron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: a paired nanoSIMS and CARD-FISH approach , 2008, The ISME Journal.
[56] D. Vuckovic. Current trends and challenges in sample preparation for global metabolomics using liquid chromatography–mass spectrometry , 2012, Analytical and Bioanalytical Chemistry.
[57] K. Chowdhury,et al. NMR-based metabolomics study of the biochemical relationship between sugarcane callus tissues and their respective nutrient culture media , 2014, Analytical and Bioanalytical Chemistry.
[58] Jeffrey C Way,et al. Engineering cyanobacteria to generate high-value products. , 2011, Trends in biotechnology.
[59] Dovi Poznanski,et al. SciDB for High-Performance Array-Structured Science Data at NERSC , 2015, Computing in Science & Engineering.
[60] A. Arkin,et al. Metabolic footprinting of mutant libraries to map metabolite utilization to genotype. , 2013, ACS chemical biology.
[61] Junefredo V. Apon,et al. Clathrate nanostructures for mass spectrometry , 2007, Nature.
[62] M. Hirai,et al. MassBank: a public repository for sharing mass spectral data for life sciences. , 2010, Journal of mass spectrometry : JMS.
[63] G. Dismukes,et al. Altered carbohydrate metabolism in glycogen synthase mutants of Synechococcus sp. strain PCC 7002: Cell factories for soluble sugars. , 2013, Metabolic engineering.