Stratified learning of local anatomical context for lung nodules in CT images

The automatic detection of lung nodules attached to other pulmonary structures is a useful yet challenging task in lung CAD systems. In this paper, we propose a stratified statistical learning approach to recognize whether a candidate nodule detected in CT images connects to any of three other major lung anatomies, namely vessel, fissure and lung wall, or is solitary with background parenchyma. First, we develop a fully automated voxel-by-voxel labeling/segmentation method of nodule, vessel, fissure, lung wall and parenchyma given a 3D lung image, via a unified feature set and classifier under conditional random field. Second, the generated Class Probability Response Maps (PRM) by voxel-level classifiers, are used to form the so-called pairwise Probability Co-occurrence Maps (PCM) which encode the spatial contextual correlations of the candidate nodule, in relation to other anatomical landmarks. Based on PCMs, higher level classifiers are trained to recognize whether the nodule touches other pulmonary structures, as a multi-label problem. We also present a new iterative fissure structure enhancement filter with superior performance. For experimental validation, we create an annotated database of 784 subvolumes with nodules of various sizes, shapes, densities and contextual anatomies, and from 239 patients. High accuracy of multi-class voxel labeling is achieved 89.3% ∼ 91.2%. The Area under ROC Curve (AUC) of vessel, fissure and lung wall connectivity classification reaches 0.8676, 0.8692 and 0.9275, respectively.

[1]  George Eastman House,et al.  Sparse Bayesian Learning and the Relevan e Ve tor Ma hine , 2001 .

[2]  M. L. R. D. Christenson,et al.  Smooth or attached solid indeterminate nodules detected at baseline CT screening in the NELSON study: cancer risk during 1 year of follow up , 2010 .

[3]  Ye Xu,et al.  MDCT-based 3-D texture classification of emphysema and early smoking related lung pathologies , 2006, IEEE Transactions on Medical Imaging.

[4]  Murat Dundar,et al.  Bayesian multiple instance learning: automatic feature selection and inductive transfer , 2008, ICML '08.

[5]  Antonio Criminisi,et al.  TextonBoost for Image Understanding: Multi-Class Object Recognition and Segmentation by Jointly Modeling Texture, Layout, and Context , 2007, International Journal of Computer Vision.

[6]  Andrea Vedaldi,et al.  Objects in Context , 2007, 2007 IEEE 11th International Conference on Computer Vision.

[7]  Gareth Funka-Lea,et al.  Graph Cuts and Efficient N-D Image Segmentation , 2006, International Journal of Computer Vision.

[8]  Dorin Comaniciu,et al.  Robust anisotropic Gaussian fitting for volumetric characterization of Pulmonary nodules in multislice CT , 2005, IEEE Transactions on Medical Imaging.

[9]  Daphne Koller,et al.  Learning Spatial Context: Using Stuff to Find Things , 2008, ECCV.

[10]  Margrit Betke,et al.  Pulmonary fissure segmentation on CT , 2006, Medical Image Anal..

[11]  Andrew McCallum,et al.  Conditional Random Fields: Probabilistic Models for Segmenting and Labeling Sequence Data , 2001, ICML.

[12]  Li Fan,et al.  Automatic Detection of Nodules Attached to Vessels in Lung CT by Volume Projection Analysis , 2002, MICCAI.

[13]  Harry J de Koning,et al.  Effect of nodule characteristics on variability of semiautomated volume measurements in pulmonary nodules detected in a lung cancer screening program. , 2008, Radiology.

[14]  Kim L. Boyer,et al.  Resilient Subclass Discriminant Analysis , 2009, 2009 IEEE 12th International Conference on Computer Vision.

[15]  David Gur,et al.  A Computational Geometry Approach to Automated Pulmonary Fissure Segmentation in CT Examinations , 2009, IEEE Transactions on Medical Imaging.

[16]  Eric A. Hoffman,et al.  Atlas-driven lung lobe segmentation in volumetric X-ray CT images , 2006, IEEE Transactions on Medical Imaging.

[17]  Gady Agam,et al.  Vessel tree reconstruction in thoracic CT scans with application to nodule detection , 2005, IEEE Transactions on Medical Imaging.

[18]  Gregory D. Hager,et al.  A two level approach for scene recognition , 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05).

[19]  Dimitris N. Metaxas,et al.  Automatic Detection and Segmentation of Ground Glass Opacity Nodules , 2006, MICCAI.

[20]  Bram van Ginneken,et al.  Supervised Enhancement Filters: Application to Fissure Detection in Chest CT Scans , 2008, IEEE Transactions on Medical Imaging.

[21]  Larry S. Davis,et al.  Observing Human-Object Interactions: Using Spatial and Functional Compatibility for Recognition , 2009, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[22]  Olga Veksler,et al.  Fast Approximate Energy Minimization via Graph Cuts , 2001, IEEE Trans. Pattern Anal. Mach. Intell..

[23]  Jamshid Dehmeshki,et al.  Segmentation of Pulmonary Nodules in Thoracic CT Scans: A Region Growing Approach , 2008, IEEE Transactions on Medical Imaging.

[24]  Michael F. McNitt-Gray,et al.  Automated classification of lung bronchovascular anatomy in CT using AdaBoost , 2007, Medical Image Anal..

[25]  Alejandro F. Frangi,et al.  Muliscale Vessel Enhancement Filtering , 1998, MICCAI.