Multi-omics approaches for understanding stressor-induced physiological changes in plants: An updated overview

[1]  E. Schena,et al.  Current understanding, challenges and perspective on portable systems applied to plant monitoring and precision agriculture. , 2022, Biosensors & bioelectronics.

[2]  K. Shinozaki,et al.  Functional genomics in plant abiotic stress responses and tolerance: From gene discovery to complex regulatory networks and their application in breeding , 2022, Proceedings of the Japan Academy. Series B, Physical and biological sciences.

[3]  Y. Begum.  Regulatory role of microRNAs (miRNAs) in the recent development of abiotic stress tolerance of plants. , 2022, Gene.

[4]  N. Ullah,et al.  Salinity Stress in Wheat (Triticum aestivum L.) in the Changing Climate: Adaptation and Management Strategies , 2021, Frontiers in Agronomy.

[5]  Parul Sharma,et al.  Unrevealing metabolomics for abiotic stress adaptation and tolerance in plants , 2021, Journal of Crop Science and Biotechnology.

[6]  K. Siddique,et al.  Omics and CRISPR-Cas9 Approaches for Molecular Insight, Functional Gene Analysis, and Stress Tolerance Development in Crops , 2021, International journal of molecular sciences.

[7]  S. Srivastava,et al.  Morphological, Physiological and Molecular Markers for Salt-Stressed Plants , 2021, Plants.

[8]  N. D’ascenzo,et al.  Past and Future of Plant Stress Detection: An Overview From Remote Sensing to Positron Emission Tomography , 2021, Frontiers in Plant Science.

[9]  J. Duro,et al.  Global inequalities in food consumption, cropland demand and land-use efficiency: A decomposition analysis , 2020 .

[10]  Guiyan Yang,et al.  Genome-wide identification and transcript profiles of walnut heat stress transcription factor involved in abiotic stress , 2020, BMC Genomics.

[11]  T. Kleine,et al.  Identification of small RNAs during cold acclimation in Arabidopsis thaliana , 2020, BMC Plant Biology.

[12]  K. Wrobel,et al.  Different approaches in metabolomic analysis of plants exposed to selenium: a comprehensive review , 2020, Acta Physiologiae Plantarum.

[13]  L. Behera,et al.  Identification and expression analysis of miRNAs and elucidation of their role in salt tolerance in rice varieties susceptible and tolerant to salinity , 2020, PloS one.

[14]  S. Ercişli,et al.  MicroRNA expression patterns unveil differential expression of conserved miRNAs and target genes against abiotic stress in safflower , 2020, PloS one.

[15]  N. Lopes,et al.  Metabolomics to Characterize Adaptive and Signaling Responses in Legume Crops under Abiotic Stresses , 2020, ACS omega.

[16]  Xueyong Li,et al.  Engineering Abiotic Stress Tolerance via CRISPR-Cas mediated genome editing. , 2020, Journal of experimental botany.

[17]  Wei Hu,et al.  An aquaporin gene MaPIP2-7 is involved in tolerance to drought, cold and salt stresses in transgenic banana (Musa acuminata L.). , 2019, Plant physiology and biochemistry : PPB.

[18]  F. Pérez,et al.  ABA and its signaling pathway are involved in the cold acclimation and deacclimation of grapevine buds , 2019, Scientia Horticulturae.

[19]  R. Beckett,et al.  Membrane sterols and genes of sterol biosynthesis are involved in the response of Triticum aestivum seedlings to cold stress. , 2019, Plant physiology and biochemistry : PPB.

[20]  C. Liu,et al.  Genome-wide identification and comparative analysis of drought-related microRNAs in two maize inbred lines with contrasting drought tolerance by deep sequencing , 2019, PloS one.

[21]  Xiping Wang,et al.  Transcriptome Analysis of Apple Leaves in Response to Powdery Mildew (Podosphaera leucotricha) Infection , 2019, International journal of molecular sciences.

[22]  J. Gutiérrez-Uribe,et al.  Selenium in Germinated Chickpea (Cicer arietinum L.) Increases the Stability of Its Oil Fraction , 2019, Plants.

[23]  W. Araújo,et al.  Selenium downregulates auxin and ethylene biosynthesis in rice seedlings to modify primary metabolism and root architecture , 2019, Planta.

[24]  Alzahrani,et al.  Identification and Characterization of Salt-Responsive MicroRNAs in Vicia faba by High-Throughput Sequencing , 2019, Genes.

[25]  J. T. Matus,et al.  The Role of UV-B light on Small RNA Activity During Grapevine Berry Development , 2018, G3: Genes, Genomes, Genetics.

[26]  J. Zhuang,et al.  Genomic and transcriptomic analyses of HD-Zip family transcription factors and their responses to abiotic stress in tea plant (Camellia sinensis). , 2019, Genomics.

[27]  Hong Zhu,et al.  Banana sRNAome and degradome identify microRNAs functioning in differential responses to temperature stress , 2019, BMC Genomics.

[28]  Mingming Xin,et al.  Overexpression of the Wheat (Triticum aestivum L.) TaPEPKR2 Gene Enhances Heat and Dehydration Tolerance in Both Wheat and Arabidopsis , 2018, Front. Plant Sci..

[29]  Yan Peng,et al.  The γ-Aminobutyric Acid (GABA) Alleviates Salt Stress Damage during Seeds Germination of White Clover Associated with Na+/K+ Transportation, Dehydrins Accumulation, and Stress-Related Genes Expression in White Clover , 2018, International journal of molecular sciences.

[30]  Chao Lv,et al.  Elucidating the hypoxic stress response in barley (Hordeum vulgare L.) during waterlogging: A proteomics approach , 2018, Scientific Reports.

[31]  Jia Liu,et al.  Exploring the effects of selenium treatment on the nutritional quality of tomato fruit. , 2018, Food chemistry.

[32]  P. Carillo.  GABA Shunt in Durum Wheat , 2018, Front. Plant Sci..

[33]  L. Su,et al.  Genome-Wide Characterization of bHLH Genes in Grape and Analysis of their Potential Relevance to Abiotic Stress Tolerance and Secondary Metabolite Biosynthesis , 2018, Front. Plant Sci..

[34]  Sudhir Kumar,et al.  Seed Priming: An Emerging Technology to Impart Abiotic Stress Tolerance in Crop Plants , 2018 .

[35]  A. Parida,et al.  Metabolomics-Guided Elucidation of Abiotic Stress Tolerance Mechanisms in Plants , 2018 .

[36]  A. Aharoni,et al.  Assimilation of 'omics' strategies to study the cuticle layer and suberin lamellae in plants. , 2017, Journal of experimental botany.

[37]  M. Bellgard,et al.  Plant Proteogenomics: Improvements to the Grapevine Genome Annotation , 2017, Proteomics.

[38]  H. Trindade,et al.  Cowpea (Vigna unguiculata L. Walp.) Metabolomics: Osmoprotection as a Physiological Strategy for Drought Stress Resistance and Improved Yield , 2017, Front. Plant Sci..

[39]  Zhu Zhu,et al.  Selenium delays tomato fruit ripening by inhibiting ethylene biosynthesis and enhancing the antioxidant defense system. , 2017, Food chemistry.

[40]  Li Zhang,et al.  Cloning and characterization of SiDHN, a novel dehydrin gene from Saussurea involucrata Kar. et Kir. that enhances cold and drought tolerance in tobacco. , 2017, Plant science : an international journal of experimental plant biology.

[41]  V. Gupta,et al.  Abiotic Stress Responses and Microbe-Mediated Mitigation in Plants: The Omics Strategies , 2017, Front. Plant Sci..

[42]  A. Villordon,et al.  Root System Architecture and Abiotic Stress Tolerance: Current Knowledge in Root and Tuber Crops , 2016, Front. Plant Sci..

[43]  Ji-Hong Liu,et al.  The miR396b of Poncirus trifoliata Functions in Cold Tolerance by Regulating ACC Oxidase Gene Expression and Modulating Ethylene-Polyamine Homeostasis. , 2016, Plant & cell physiology.

[44]  Jonathan D. G. Jones,et al.  Accelerated cloning of a potato late blight–resistance gene using RenSeq and SMRT sequencing , 2016, Nature Biotechnology.

[45]  Jonathan D. G. Jones,et al.  Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture , 2016, Nature Biotechnology.

[46]  G. Glauser,et al.  Lipid Antioxidant and Galactolipid Remodeling under Temperature Stress in Tomato Plants , 2016, Front. Plant Sci..

[47]  Xiaomin Song,et al.  Proteogenomics of a saxitoxin-producing and non-toxic strain of Anabaena circinalis (cyanobacteria) in response to extracellular NaCl and phosphate depletion. , 2016, Environmental microbiology.

[48]  Adriana Ambrosini,et al.  Plant growth-promoting bacteria as inoculants in agricultural soils , 2015, Genetics and molecular biology.

[49]  I. Feussner,et al.  An enhanced plant lipidomics method based on multiplexed liquid chromatography-mass spectrometry reveals additional insights into cold- and drought-induced membrane remodeling. , 2015, The Plant journal : for cell and molecular biology.

[50]  Jenny Renaut,et al.  The quest for tolerant varieties: the importance of integrating “omics” techniques to phenotyping , 2015, Front. Plant Sci..

[51]  Baohong Zhang.  MicroRNA: a new target for improving plant tolerance to abiotic stress. , 2015, Journal of experimental botany.

[52]  Lothar Willmitzer,et al.  Linking Gene Expression and Membrane Lipid Composition of Arabidopsis[W][OPEN] , 2014, Plant Cell.

[53]  P. Bernat,et al.  Characterisation of the wheat phospholipid fraction in the presence of nickel and/or selenium , 2014, Plant Growth Regulation.

[54]  A. Fernie,et al.  The use of metabolomics to dissect plant responses to abiotic stresses , 2012, Cellular and Molecular Life Sciences.

[55]  Xueyong Yang,et al.  The Expression Profiling of the Lipoxygenase (LOX) Family Genes During Fruit Development, Abiotic Stress and Hormonal Treatments in Cucumber (Cucumis sativus L.) , 2012, International journal of molecular sciences.

[56]  M. Udvardi,et al.  Comparative metabolomics of drought acclimation in model and forage legumes. , 2012, Plant, cell & environment.

[57]  A. Gesteira,et al.  Analysis of the NAC transcription factor gene family in citrus reveals a novel member involved in multiple abiotic stress responses , 2011, Tree Genetics & Genomes.

[58]  L. Willmitzer,et al.  Analysis of short-term changes in the Arabidopsis thaliana glycerolipidome in response to temperature and light. , 2011, The Plant journal : for cell and molecular biology.

[59]  Akira Oikawa,et al.  Pause-and-Stop: The Effects of Osmotic Stress on Cell Proliferation during Early Leaf Development in Arabidopsis and a Role for Ethylene Signaling in Cell Cycle Arrest[W] , 2011, Plant Cell.

[60]  W. Weckwerth,et al.  Metabolomics Unravel Contrasting Effects of Biodiversity on the Performance of Individual Plant Species , 2010, PloS one.

[61]  Yijun Qi,et al.  DNA methylation mediated by a microRNA pathway. , 2010, Molecular cell.

[62]  Q. Shen,et al.  WRKY transcription factors. , 2010, Trends in plant science.

[63]  Chung-Mo Park,et al.  MYB96-mediated abscisic acid signals induce pathogen resistance response by promoting salicylic acid biosynthesis in Arabidopsis. , 2010, The New phytologist.

[64]  K. Shinozaki,et al.  'Omics' analyses of regulatory networks in plant abiotic stress responses. , 2010, Current opinion in plant biology.

[65]  S. Kang,et al.  Identification of a pathogen-induced Glycine max transcription factor GmWRKY1 , 2009 .

[66]  Kazuki Saito,et al.  Integrated omics approaches in plant systems biology. , 2009, Current opinion in chemical biology.

[67]  M. López-Climent,et al.  Modulation of the antioxidant system in Citrus under waterlogging and subsequent drainage. , 2009, Journal of plant physiology.

[68]  Kazuo Shinozaki,et al.  Metabolic Pathways Involved in Cold Acclimation Identified by Integrated Analysis of Metabolites and Transcripts Regulated by DREB1A and DREB2A1[W][OA] , 2009, Plant Physiology.

[69]  Yiwei Jiang,et al.  Reactive oxygen species, antioxidant enzyme activities and gene expression patterns in leaves and roots of Kentucky bluegrass in response to drought stress and recovery , 2009 .

[70]  Kazuo Shinozaki,et al.  Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics. , 2009, The Plant journal : for cell and molecular biology.

[71]  O. Voinnet.  Origin, Biogenesis, and Activity of Plant MicroRNAs , 2009, Cell.

[72]  Nobuhiro Suzuki,et al.  Ascorbate Peroxidase 1 Plays a Key Role in the Response of Arabidopsis thaliana to Stress Combination* , 2008, Journal of Biological Chemistry.

[73]  Diego Mauricio Riaño-Pachón,et al.  The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes , 2008, PloS one.

[74]  D. Roby,et al.  A MYB Transcription Factor Regulates Very-Long-Chain Fatty Acid Biosynthesis for Activation of the Hypersensitive Cell Death Response in Arabidopsis[W][OA] , 2008, The Plant Cell Online.

[75]  V. Shulaev,et al.  Metabolomics for plant stress response. , 2008, Physiologia plantarum.

[76]  A. Wahid,et al.  Heat tolerance in plants: An overview , 2007 .

[77]  N. Sreenivasulu,et al.  Deciphering the regulatory mechanisms of abiotic stress tolerance in plants by genomic approaches. , 2007, Gene.

[78]  M. C. Baracat-Pereira,et al.  Arabidopsis and tobacco plants ectopically expressing the soybean antiquitin-like ALDH7 gene display enhanced tolerance to drought, salinity, and oxidative stress. , 2006, Journal of experimental botany.

[79]  Kazuo Shinozaki,et al.  Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. , 2006, Annual review of plant biology.

[80]  B. Zhu,et al.  Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max) , 2006, Journal of Plant Research.

[81]  T. Fujimura,et al.  Genome-Wide Analysis of the ERF Gene Family in Arabidopsis and Rice[W] , 2006, Plant Physiology.

[82]  K. Shinozaki,et al.  Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice. , 2006, Plant & cell physiology.

[83]  C. Hong,et al.  Over-expression of tobacco NtHSP70-1 contributes to drought-stress tolerance in plants , 2006, Plant Cell Reports.

[84]  Yanxiu Zhao,et al.  RETRACTED ARTICLE: Analysis of the physiological mechanism of salt-tolerant transgenic rice carrying a vacuolar Na+/H+ antiporter gene from Suaeda salsa , 2006, Journal of Plant Research.

[85]  P. Klein,et al.  Sorghum bicolor’s Transcriptome Response to Dehydration, High Salinity and ABA , 2005, Plant Molecular Biology.

[86]  Corey D Broeckling,et al.  Overexpression of WXP1, a putative Medicago truncatula AP2 domain-containing transcription factor gene, increases cuticular wax accumulation and enhances drought tolerance in transgenic alfalfa (Medicago sativa). , 2005, The Plant journal : for cell and molecular biology.

[87]  Gang Wu,et al.  Nuclear processing and export of microRNAs in Arabidopsis. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[88]  R. Sunkar,et al.  Drought and Salt Tolerance in Plants , 2005 .

[89]  B. Hwang,et al.  Overexpression of a pepper basic pathogenesis-related protein 1 gene in tobacco plants enhances resistance to heavy metal and pathogen stresses , 2005, Plant Cell Reports.

[90]  M. Barton,et al.  MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome. , 2004, Developmental cell.

[91]  E. Delhaize,et al.  Engineering high-level aluminum tolerance in barley with the ALMT1 gene. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[92]  Oliver Fiehn,et al.  A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[93]  Sanghyuk Lee,et al.  MicroRNA genes are transcribed by RNA polymerase II , 2004, The EMBO journal.

[94]  Kazuki Saito,et al.  Potential of metabolomics as a functional genomics tool. , 2004, Trends in plant science.

[95]  D. Bartel,et al.  Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. , 2004, Molecular cell.

[96]  H. Shou,et al.  Expression of the Nicotiana protein kinase (NPK1) enhanced drought tolerance in transgenic maize. , 2004, Journal of experimental botany.

[97]  A. Tyagi,et al.  Overexpression of a zinc-finger protein gene from rice confers tolerance to cold, dehydration, and salt stress in transgenic tobacco. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[98]  V. Kim,et al.  MicroRNA precursors in motion: exportin-5 mediates their nuclear export. , 2004, Trends in cell biology.

[99]  M. Agarwal,et al.  Heat-tolerant basmati rice engineered by over-expression of hsp101 , 2003, Plant Molecular Biology.

[100]  J. Billard,et al.  Fructans, But Not the Sucrosyl-Galactosides, Raffinose and Loliose, Are Affected by Drought Stress in Perennial Ryegrass , 2003, Plant Physiology.

[101]  L. Xiong,et al.  Disease Resistance and Abiotic Stress Tolerance in Rice Are Inversely Modulated by an Abscisic Acid–Inducible Mitogen-Activated Protein Kinase Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.008714. , 2003, The Plant Cell Online.

[102]  R. Wu,et al.  Genetic improvement of Basmati rice for salt and drought tolerance by regulated expression of a barley Hva1 cDNA , 2002 .

[103]  Y. Im,et al.  Antisense expression of an Arabidopsis omega-3 fatty acid desaturase gene reduces salt/drought tolerance in transgenic tobacco plants. , 2002, Molecules and cells.

[104]  J. Zeevaart,et al.  Overexpression of a 9-cis-Epoxycarotenoid Dioxygenase Gene in Nicotiana plumbaginifolia Increases Abscisic Acid and Phaseic Acid Levels and Enhances Drought Tolerance1 , 2002, Plant Physiology.

[105]  Eve Syrkin Wurtele,et al.  Functional genomics: high-throughput mRNA, protein, and metabolite analyses. , 2002, Metabolic engineering.

[106]  P. Mohanty,et al.  MOLECULAR MECHANISMS OF QUENCHING OF REACTIVE OXYGEN SPECIES BY PROLINE UNDER STRESS IN PLANTS , 2002 .

[107]  H. Bohnert,et al.  PLANT CELLULAR AND MOLECULAR RESPONSES TO HIGH SALINITY. , 2000, Annual review of plant physiology and plant molecular biology.

[108]  K. Jones,et al.  Iron-superoxide dismutase expression in transgenic alfalfa increases winter survival without a detectable increase in photosynthetic oxidative stress tolerance. , 2000, Plant physiology.

[109]  Michael D. McLean,et al.  The Metabolism and Functions of [gamma]-Aminobutyric Acid. , 1999, Plant physiology.