Single mutation makes Escherichia coli an insect mutualist

[1]  K. King,et al.  Microbial evolution and transitions along the parasite–mutualist continuum , 2021, Nature Reviews Microbiology.

[2]  Zakee L Sabree,et al.  Multiple concurrent and convergent stages of genome reduction in bacterial symbionts across a stink bug family , 2021, Scientific Reports.

[3]  J. Demengeot,et al.  Specific Eco-Evolutionary Contexts in the Mouse Gut Reveal Escherichia coli Metabolic Versatility , 2019, SSRN Electronic Journal.

[4]  J. McCutcheon,et al.  The Life of an Insect Endosymbiont from the Cradle to the Grave , 2019, Current Biology.

[5]  T. Fukatsu,et al.  Morphogenesis and development of midgut symbiotic organ of the stinkbug Plautia stali (Hemiptera: Pentatomidae) , 2019, Zoological Letters.

[6]  B. Bohannan,et al.  Experimental bacterial adaptation to the zebrafish gut reveals a primary role for immigration , 2018, PLoS biology.

[7]  Julio Collado-Vides,et al.  RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12 , 2018, Nucleic Acids Res..

[8]  Ghee Chuan Lai,et al.  Experimental evolution of a fungal pathogen into a gut symbiont , 2018, Science.

[9]  P. Schultz,et al.  Engineering yeast endosymbionts as a step toward the evolution of mitochondria , 2018, Proceedings of the National Academy of Sciences.

[10]  T. Fukatsu,et al.  Natsumushi: Image measuring software for entomological studies , 2018, Entomological Science.

[11]  T. Fukatsu,et al.  Aseptic rearing procedure for the stinkbug Plautia stali (Hemiptera: Pentatomidae) by sterilizing food-derived bacterial contaminants , 2017, Applied Entomology and Zoology.

[12]  V. Cooper,et al.  Host-selected mutations converging on a global regulator drive an adaptive leap towards symbiosis in bacteria , 2017, eLife.

[13]  T. Fukatsu,et al.  Recurrent evolution of gut symbiotic bacteria in pentatomid stinkbugs , 2016, Zoological Letters.

[14]  Roland Eils,et al.  Complex heatmaps reveal patterns and correlations in multidimensional genomic data , 2016, Bioinform..

[15]  N. Gerardo,et al.  Experimental Evolution as an Underutilized Tool for Studying Beneficial Animal–Microbe Interactions , 2016, Front. Microbiol..

[16]  Suzanne A Ford,et al.  Rapid evolution of microbe-mediated protection against pathogens in a worm host , 2016, The ISME Journal.

[17]  K. Kaneko,et al.  Noise-driven growth rate gain in clonal cellular populations , 2016, Proceedings of the National Academy of Sciences.

[18]  István Nagy,et al.  A highly precise and portable genome engineering method allows comparison of mutational effects across bacterial species , 2016, Proceedings of the National Academy of Sciences.

[19]  N. Satoh,et al.  Obligate bacterial mutualists evolving from environmental bacteria in natural insect populations , 2016, Nature Microbiology.

[20]  S. Gilbert,et al.  Eco-Evo-Devo: developmental symbiosis and developmental plasticity as evolutionary agents , 2015, Nature Reviews Genetics.

[21]  Z. D. Blount,et al.  The unexhausted potential of E. coli , 2015, eLife.

[22]  T. Fukatsu,et al.  Female-Specific Specialization of a Posterior End Region of the Midgut Symbiotic Organ in Plautia splendens and Allied Stinkbugs , 2015, Applied and Environmental Microbiology.

[23]  M. Marz,et al.  Vitamin supplementation by gut symbionts ensures metabolic homeostasis in an insect host , 2014, Proceedings of the Royal Society B: Biological Sciences.

[24]  A. Knoll,et al.  Animals in a bacterial world, a new imperative for the life sciences , 2013, Proceedings of the National Academy of Sciences.

[25]  Kevin W Eliceiri,et al.  NIH Image to ImageJ: 25 years of image analysis , 2012, Nature Methods.

[26]  N. Moran,et al.  Extreme genome reduction in symbiotic bacteria , 2011, Nature Reviews Microbiology.

[27]  M. Hattori,et al.  Reductive Evolution of Bacterial Genome in Insect Gut Environment , 2011, Genome biology and evolution.

[28]  N. Fujita,et al.  Novel Roles of cAMP Receptor Protein (CRP) in Regulation of Transport and Metabolism of Carbon Sources , 2011, PloS one.

[29]  Andrew Wright,et al.  Robust Growth of Escherichia coli , 2010, Current Biology.

[30]  Olivier Tenaillon,et al.  The population genetics of commensal Escherichia coli , 2010, Nature Reviews Microbiology.

[31]  Mark D. Robinson,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[32]  T. Whittam,et al.  Cryptic Lineages of the Genus Escherichia , 2009, Applied and Environmental Microbiology.

[33]  T. Fukatsu,et al.  Quenching autofluorescence of insect tissues for in situ detection of endosymbionts , 2009 .

[34]  B. Uhlin,et al.  Type 1 Fimbriae, a Colonization Factor of Uropathogenic Escherichia coli, Are Controlled by the Metabolic Sensor CRP-cAMP , 2009, PLoS pathogens.

[35]  B. Görke,et al.  Carbon catabolite repression in bacteria: many ways to make the most out of nutrients , 2008, Nature Reviews Microbiology.

[36]  F. Taddei,et al.  Dissecting the Genetic Components of Adaptation of Escherichia coli to the Mouse Gut , 2007, PLoS genetics.

[37]  C. Francke,et al.  How Phosphotransferase System-Related Protein Phosphorylation Regulates Carbohydrate Metabolism in Bacteria , 2006, Microbiology and Molecular Biology Reviews.

[38]  N. Moran,et al.  Molecular Interactions between Bacterial Symbionts and Their Hosts , 2006, Cell.

[39]  H. Mori,et al.  Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection , 2006, Molecular systems biology.

[40]  N. Moran,et al.  Regulation of Transcription in a Reduced Bacterial Genome: Nutrient-Provisioning Genes of the Obligate Symbiont Buchnera aphidicola , 2005, Journal of bacteriology.

[41]  B. Bassler,et al.  Regulation of Uptake and Processing of the Quorum-Sensing Autoinducer AI-2 in Escherichia coli , 2005, Journal of bacteriology.

[42]  J. Collado-Vides,et al.  Identifying global regulators in transcriptional regulatory networks in bacteria. , 2003, Current opinion in microbiology.

[43]  F. Taddei,et al.  Costs and Benefits of High Mutation Rates: Adaptive Evolution of Bacteria in the Mouse Gut , 2001, Science.

[44]  B. Wanner,et al.  One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[45]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[46]  Chrystala Constantinidou,et al.  Identification of the CRP regulon using in vitro and in vivo transcriptional profiling. , 2004, Nucleic acids research.

[47]  Y Wakamoto,et al.  On-chip culture system for observation of isolated individual cells. , 2001, Lab on a chip.

[48]  H. Ochman,et al.  Distribution of chromosome length variation in natural isolates of Escherichia coli. , 1998, Molecular biology and evolution.