Protein X-ray Crystallography and Drug Discovery
暂无分享,去创建一个
[1] G. Labesse,et al. In-plate protein crystallization, in situ ligand soaking and X-ray diffraction. , 2011, Acta crystallographica. Section D, Biological crystallography.
[2] Haruki Nakamura,et al. Announcing the worldwide Protein Data Bank , 2003, Nature Structural Biology.
[3] A. J. Higgins,et al. Emerging Role of Electron Microscopy in Drug Discovery. , 2019, Trends in biochemical sciences.
[4] Zbigniew Dauter,et al. Progress in protein crystallography. , 2016, Protein and peptide letters.
[5] Christopher W Murray,et al. Fragment-based lead discovery using X-ray crystallography. , 2005, Journal of medicinal chemistry.
[6] W. Jahnke,et al. NMR in drug discovery: A practical guide to identification and validation of ligands interacting with biological macromolecules. , 2016, Progress in nuclear magnetic resonance spectroscopy.
[7] Terese Bergfors,et al. Seeds to crystals. , 2003, Journal of structural biology.
[8] T. Blundell,et al. Structure-guided fragment-based drug discovery at the synchrotron: screening binding sites and correlations with hotspot mapping , 2019, Philosophical Transactions of the Royal Society A.
[9] Marina V. Rodnina,et al. Structural basis for the inhibition of the eukaryotic ribosome , 2014, Nature.
[10] Kam Y. J. Zhang,et al. Clinical efficacy of a RAF inhibitor needs broad target blockade in BRAF-mutant melanoma , 2010, Nature.
[11] Meitian Wang,et al. Serial Synchrotron X-Ray Crystallography (SSX). , 2017, Methods in molecular biology.
[12] Clemens Vonrhein,et al. Data processing and analysis with the autoPROC toolbox , 2011, Acta crystallographica. Section D, Biological crystallography.
[13] Kristian Birchall,et al. Characterization of Three Druggable Hot-Spots in the Aurora-A/TPX2 Interaction Using Biochemical, Biophysical, and Fragment-Based Approaches. , 2017, ACS chemical biology.
[14] M. Yeager,et al. MicroED structures of HIV-1 Gag CTD-SP1 reveal binding interactions with the maturation inhibitor bevirimat , 2018, Proceedings of the National Academy of Sciences.
[15] J. Ng,et al. Gentle, fast and effective crystal soaking by acoustic dispensing , 2016, bioRxiv.
[16] Gwyndaf Evans,et al. DIALS: implementation and evaluation of a new integration package , 2018, Acta crystallographica. Section D, Structural biology.
[17] Charlotte M. Deane,et al. Partial-occupancy binders identified by the Pan-Dataset Density Analysis method offer new chemical opportunities and reveal cryptic binding sites , 2017, Structural dynamics.
[18] Georg Weidenspointner,et al. Femtosecond X-ray protein nanocrystallography , 2011, Nature.
[19] Graeme Winter,et al. xia2: an expert system for macromolecular crystallography data reduction , 2010 .
[20] Haiguang Liu,et al. The XFEL Protein Crystallography: Developments and Perspectives , 2019, International journal of molecular sciences.
[21] Garth J. Williams,et al. High-Resolution Protein Structure Determination by Serial Femtosecond Crystallography , 2012, Science.
[22] J. D. Bernal,et al. X-Ray Photographs of Crystalline Pepsin , 1934, Nature.
[23] Jeremy C. Smith,et al. "To Be or Not to Be" Protonated: Atomic Details of Human Carbonic Anhydrase-Clinical Drug Complexes by Neutron Crystallography and Simulation. , 2018, Structure.
[24] Kurt Wüthrich,et al. NMR analysis of a 900K GroEL–GroES complex , 2002, Nature.
[25] FDA approves first targeted therapy for metastatic bladder cancer , 2019, Case Medical Research.
[26] Michael Krug,et al. XDSAPP: a graphical user interface for the convenient processing of diffraction data using XDS , 2012 .
[27] T. Gonen,et al. The cryo-EM method microcrystal electron diffraction (MicroED) , 2019, Nature Methods.
[28] Garth J. Williams,et al. Serial Femtosecond Crystallography of G Protein–Coupled Receptors , 2013, Science.
[29] A. Wlodawer. Stereochemistry and Validation of Macromolecular Structures. , 2017, Methods in molecular biology.
[30] Gerhard Klebe,et al. High-Throughput Crystallography: Reliable and Efficient Identification of Fragment Hits. , 2016, Structure.
[31] E Garman,et al. Cool data: quantity AND quality. , 1999, Acta crystallographica. Section D, Biological crystallography.
[32] Srinivasulu Aitipamula,et al. Evaluating Suspension Formulations of Theophylline Cocrystals With Artificial Sweeteners. , 2018, Journal of pharmaceutical sciences.
[33] Yang Zhang,et al. Protein structure prediction provides comparable performance to crystallographic structures in docking-based virtual screening. , 2015, Methods.
[34] A. Letai,et al. Found in Translation: How Preclinical Research Is Guiding the Clinical Development of the BCL2-Selective Inhibitor Venetoclax. , 2017, Cancer discovery.
[35] G. Labesse,et al. Combining 'dry' co-crystallization and in situ diffraction to facilitate ligand screening by X-ray crystallography. , 2015, Acta crystallographica. Section D, Biological crystallography.
[36] Doriano Fabbro,et al. Structural biology contributions to the discovery of drugs to treat chronic myelogenous leukaemia , 2006, Acta crystallographica. Section D, Biological crystallography.
[37] Peter Murphy,et al. Automated harvesting and processing of protein crystals through laser photoablation , 2016, Acta crystallographica. Section D, Structural biology.
[38] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1977, Journal of molecular biology.
[39] Jianwei Miao,et al. Emerging opportunities in structural biology with X-ray free-electron lasers. , 2012, Current opinion in structural biology.
[40] M. Reetz,et al. Utility of B-Factors in Protein Science: Interpreting Rigidity, Flexibility, and Internal Motion and Engineering Thermostability. , 2019, Chemical reviews.
[41] L. Lam,et al. ABT-199, a potent and selective BCL-2 inhibitor, achieves antitumor activity while sparing platelets , 2013, Nature Medicine.
[42] Raymond C. Stevens,et al. Structural Basis for BABIM Inhibition of Botulinum Neurotoxin Type B Protease , 2000 .
[43] Sébastien Boutet,et al. Protein crystal structure obtained at 2.9 Å resolution from injecting bacterial cells into an X-ray free-electron laser beam , 2014, Proceedings of the National Academy of Sciences.
[44] Sebastian Kelm,et al. A multi-crystal method for extracting obscured crystallographic states from conventionally uninterpretable electron density , 2017, Nature Communications.
[45] Gérard Bricogne,et al. High‐Throughput Macromolecular Crystallography in Drug Discovery , 2020 .
[46] J. Hajdu,et al. Potential for biomolecular imaging with femtosecond X-ray pulses , 2000, Nature.
[47] R. Cheng,et al. X-ray free electron laser: opportunities for drug discovery. , 2017, Essays in biochemistry.
[48] Didier Nurizzo,et al. Fully Autonomous Characterization and Data Collection from Crystals of Biological Macromolecules. , 2019, Journal of visualized experiments : JoVE.
[49] Richard J. Hall,et al. Crystallographic screening using ultra-low-molecular-weight ligands to guide drug design. , 2019, Drug discovery today.
[50] Wim G. J. Hol,et al. PROTEIN CRYSTALLOGRAPHY AND COMPUTER-GRAPHICS TOWARD RATIONAL DRUG DESIGN , 1986 .
[51] Andreas Förster,et al. A shared vision for macromolecular crystallography over the next five years , 2019, Structural dynamics.
[52] Randy J. Read,et al. Overview of the CCP4 suite and current developments , 2011, Acta crystallographica. Section D, Biological crystallography.
[53] Tim Gruene,et al. Rapid Structure Determination of Microcrystalline Molecular Compounds Using Electron Diffraction , 2018, Angewandte Chemie.
[54] A. Fitch,et al. Applications of X-ray Powder Diffraction in Protein Crystallography and Drug Screening , 2020, Crystals.
[55] M. Akke,et al. Elucidation of Hydrogen Bonding Patterns in Ligand-Free, Lactose- and Glycerol-Bound Galectin-3C by Neutron Crystallography to Guide Drug Design. , 2018, Journal of medicinal chemistry.
[56] M. F. Sugrue. Pharmacological and ocular hypotensive properties of topical carbonic anhydrase inhibitors , 2000, Progress in Retinal and Eye Research.
[57] Claudio N. Cavasotto,et al. Homology modeling in drug discovery: current trends and applications. , 2009, Drug discovery today.
[58] S. Ralph,et al. Mefloquine targets the Plasmodium falciparum 80S ribosome to inhibit protein synthesis , 2017, Nature Microbiology.
[59] Patrick Collins,et al. The XChemExplorer graphical workflow tool for routine or large-scale protein–ligand structure determination , 2017, Acta crystallographica. Section D, Structural biology.
[60] D. Ringe,et al. Enzyme crystal structure in a neat organic solvent. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[61] R. Huddart,et al. Erdafitinib in Locally Advanced or Metastatic Urothelial Carcinoma. , 2019, The New England journal of medicine.
[62] G. L. Clark,et al. The Crystal Structure of Insulin , 1932 .
[63] C. Murray,et al. Discovery and Pharmacological Characterization of JNJ-42756493 (Erdafitinib), a Functionally Selective Small-Molecule FGFR Family Inhibitor , 2017, Molecular Cancer Therapeutics.
[64] P. Hirth,et al. Vemurafenib: the first drug approved for BRAF-mutant cancer , 2012, Nature Reviews Drug Discovery.
[65] Laurent Maveyraud,et al. Structural Basis for Clinical Longevity of Carbapenem Antibiotics in the Face of Challenge by the Common Class A Beta-Lactamases from Antibiotic-Resistant Bacteria , 1998 .
[66] Marcel L Verdonk,et al. Automated Protein–Ligand Crystallography for Structure‐Based Drug Design , 2006, ChemMedChem.
[67] Gerard J Kleywegt,et al. Application and limitations of X-ray crystallographic data in structure-based ligand and drug design. , 2003, Angewandte Chemie.
[68] Huilin Wang,et al. Critical evaluation of bioinformatics tools for the prediction of protein crystallization propensity , 2017, Briefings Bioinform..
[69] Anton Barty,et al. Structure of a photosynthetic reaction centre determined by serial femtosecond crystallography , 2013, Nature Communications.
[70] Hongwei Guo,et al. Fragment Screening of RORγt Using Cocktail Crystallography: Identification of Simultaneous Binding of Multiple Fragments , 2016, ChemMedChem.
[71] Luzi J. Barandun,et al. Soaking suggests “alternative facts”: Only co-crystallization discloses major ligand-induced interface rearrangements of a homodimeric tRNA-binding protein indicating a novel mode-of-inhibition , 2017, PloS one.
[72] Frank von Delft,et al. Proper modelling of ligand binding requires an ensemble of bound and unbound states , 2017, Acta crystallographica. Section D, Structural biology.
[73] C. Tse,et al. ABT-263: a potent and orally bioavailable Bcl-2 family inhibitor. , 2008, Cancer research.
[74] V. Cherezov,et al. High-throughput in situ X-ray screening of and data collection from protein crystals at room temperature and under cryogenic conditions , 2018, Nature Protocols.
[75] Tamir Gonen,et al. Three-dimensional electron crystallography of protein microcrystals , 2013, eLife.
[76] John T. Powers,et al. Targeting Bcr–Abl by combining allosteric with ATP-binding-site inhibitors , 2010, Nature.
[77] Claudio Ciferri,et al. Cryo-EM in drug discovery: achievements, limitations and prospects , 2018, Nature Reviews Drug Discovery.
[78] Olof Svensson,et al. Automatic processing of macromolecular crystallography X-ray diffraction data at the ESRF , 2013, Journal of applied crystallography.
[79] Gerard J Kleywegt,et al. Limitations and lessons in the use of X-ray structural information in drug design , 2008, Drug Discovery Today.
[80] Kam Y. J. Zhang,et al. Discovery of a selective inhibitor of oncogenic B-Raf kinase with potent antimelanoma activity , 2008, Proceedings of the National Academy of Sciences.
[81] Bernhard Rupp,et al. Approaches to automated protein crystal harvesting. , 2014, Acta crystallographica. Section F, Structural biology communications.
[82] Torsten Schwede,et al. Modelling three-dimensional protein structures for applications in drug design. , 2014, Drug discovery today.
[83] Anna K H Hirsch,et al. Concepts and Core Principles of Fragment-Based Drug Design , 2019, Molecules.
[84] A. D'arcy,et al. Microseed matrix screening for optimization in protein crystallization: what have we learned? , 2014, Acta crystallographica. Section F, Structural biology communications.
[85] G. Bricogne,et al. Refinement of severely incomplete structures with maximum likelihood in BUSTER-TNT. , 2004, Acta crystallographica. Section D, Biological crystallography.
[86] Timothy F. Havel,et al. Solution conformation of proteinase inhibitor IIA from bull seminal plasma by 1H nuclear magnetic resonance and distance geometry. , 1985, Journal of molecular biology.
[87] Jean-Pierre Marquette,et al. SAR and X-ray. A new approach combining fragment-based screening and rational drug design: application to the discovery of nanomolar inhibitors of Src SH2. , 2002, Journal of medicinal chemistry.
[88] P J Goodford,et al. COMPOUNDS DESIGNED TO FIT A SITE OF KNOWN STRUCTURE IN HUMAN HAEMOGLOBIN , 1976, British journal of pharmacology.
[89] R. G. Hart,et al. Structure of Myoglobin: A Three-Dimensional Fourier Synthesis at 2 Å. Resolution , 1960, Nature.
[90] Kunio Hirata,et al. Native structure of photosystem II at 1.95 Å resolution viewed by femtosecond X-ray pulses , 2014, Nature.
[91] Tamir Gonen,et al. High-resolution structure determination by continuous rotation data collection in MicroED , 2014, Nature Methods.
[92] Owen Johnson,et al. iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM , 2011, Acta crystallographica. Section D, Biological crystallography.
[93] Anton Barty,et al. Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography , 2014, Nature Communications.
[94] R. Zanon,et al. Applications of Powder X-Ray Diffraction in Small Molecule Pharmaceuticals: Achievements and Aspirations. , 2018, Journal of pharmaceutical sciences.
[95] A. W. Schüttelkopf,et al. PRODRG: a tool for high-throughput crystallography of protein-ligand complexes. , 2004, Acta crystallographica. Section D, Biological crystallography.
[96] D. Yin,et al. Preparation of cross-linked hen-egg white lysozyme crystals free of cracks , 2016, Scientific Reports.
[97] A. Brünger. Free R value: a novel statistical quantity for assessing the accuracy of crystal structures , 1992, Nature.
[98] J. Rose,et al. Native SAD is maturing , 2015, IUCrJ.
[99] P. Hajduk,et al. Discovering High-Affinity Ligands for Proteins: SAR by NMR , 1996, Science.
[100] U. H. Danielson,et al. Biophysics in drug discovery: impact, challenges and opportunities , 2016, Nature Reviews Drug Discovery.
[101] Gerhard Klebe,et al. Structures of endothiapepsin-fragment complexes from crystallographic fragment screening using a novel, diverse and affordable 96-compound fragment library. , 2016, Acta crystallographica. Section F, Structural biology communications.
[102] W. B. O’Dell,et al. Neutron protein crystallography: A complementary tool for locating hydrogens in proteins. , 2016, Archives of biochemistry and biophysics.
[103] S. Korsmeyer,et al. An inhibitor of Bcl-2 family proteins induces regression of solid tumours , 2005, Nature.
[104] R. Lewis,et al. Principles and Practice in Macromolecular X-Ray Crystallography , 2019, Biomolecular and Bioanalytical Techniques.
[105] Ilka Müller,et al. Guidelines for the successful generation of protein–ligand complex crystals , 2017, Acta crystallographica. Section D, Structural biology.
[106] C. J. Lusty. A gentle vapor-diffusion technique for cross-linking of protein crystals for cryocrystallography , 1999 .
[107] J. Cushman,et al. Characterization and expression of a NADP-malic enzyme cDNA induced by salt stress from the facultative crassulacean acid metabolism plant, Mesembryanthemum crystallinum. , 1992, European journal of biochemistry.