Whole cell segmentation in solid tissue sections

Understanding the cellular and molecular basis of tissue development and function requires analysis of individual cells while in their tissue context.

[1]  Demetri Terzopoulos,et al.  Snakes: Active contour models , 2004, International Journal of Computer Vision.

[2]  Anshuman Razdan,et al.  Volumetric Segmentation Using Weibull E-SD Fields , 2003, IEEE Trans. Vis. Comput. Graph..

[3]  Badrinath Roysam,et al.  Hierarchical, model‐based merging of multiple fragments for improved three‐dimensional segmentation of nuclei , 2005, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

[4]  Vannary Meas-Yedid,et al.  Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing , 2002, IEEE Transactions on Medical Imaging.

[5]  Arnold W. M. Smeulders,et al.  A Minimum Cost Approach for Segmenting Networks of Lines , 2001, International Journal of Computer Vision.

[6]  Jan J. Gerbrands,et al.  Three-dimensional image segmentation using a split, merge and group approach , 1991, Pattern Recognit. Lett..

[7]  K. Chin,et al.  In situ analyses of genome instability in breast cancer , 2004, Nature Genetics.

[8]  C Wählby,et al.  Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections , 2004, Journal of microscopy.

[9]  Ugo Montanari,et al.  On the optimal detection of curves in noisy pictures , 1971, CACM.

[10]  S. Shafer,et al.  Automatic multiparameter fluorescence imaging for determining lymphocyte phenotype and activation status in melanoma tissue sections. , 1996, Cytometry.

[11]  S J Lockett,et al.  Automatic detection of clustered, fluorescent-stained nuclei by digital image-based cytometry. , 1994, Cytometry.

[12]  James M. Keller,et al.  Snakes on the Watershed , 2001, IEEE Trans. Pattern Anal. Mach. Intell..

[13]  Robert T. Schultz,et al.  A New Approach to 3D Sulcal Ribbon Finding from MR Images , 1999, MICCAI.

[14]  Joakim Lindblad,et al.  Algorithms for Cytoplasm Segmentation of Fluorescence Labelled Cells , 2002, Analytical cellular pathology : the journal of the European Society for Analytical Cellular Pathology.

[15]  Juhui Wang,et al.  3-D aggregated object detection and labeling from multivariate confocal microscopy images: A model validation approach , 2003, IEEE Trans. Syst. Man Cybern. Part B.

[16]  J. Kouyoumdjian,et al.  Spatial organization of three‐dimensional cocultures of adriamycin‐sensitive and ‐resistant human breast cancer MCF‐7 cells , 2003, Biology of the cell.

[17]  Thomas Kämpke,et al.  Nonparametric image segmentation , 2005, Pattern Analysis and Applications.

[18]  Piet W. Verbeek,et al.  An Efficient Uniform Cost Algorithm Applied to Distance Transforms , 1989, IEEE Trans. Pattern Anal. Mach. Intell..

[19]  Jan J. Gerbrands,et al.  Three‐dimensional object delineation by dynamic programming , 1994 .

[20]  P. Danielsson.  Euclidean distance mapping , 1980 .

[21]  Christopher Jennison,et al.  Statistical image analysis for a confocal microscopy two‐dimensional section of cartilage growth , 2004 .

[22]  R. Malladi,et al.  Segmentation of nuclei and cells using membrane related protein markers , 2001, Journal of microscopy.

[23]  C. Tomlin,et al.  Mathematical Modeling of Planar Cell Polarity to Understand Domineering Nonautonomy , 2005, Science.

[24]  D. Pinkel,et al.  Segmentation of confocal microscope images of cell nuclei in thick tissue sections , 1999, Journal of microscopy.