Inferring Alzheimer’s disease pathologic traits from clinical measures in living adults

Background and Objectives: Develop imputation models using clinical measures to infer Alzheimer's disease neuropathologic changes (ADNC) in living adults to identify adults at risk for Alzheimer's disease (AD). Methods: We used clinical and postmortem data from two prospective cohort studies, Memory and Aging Project (MAP) and Religious Orders Study (ROS). We used generalized linear regression models with Elastic Net penalty to train imputation models of ADNC traits (beta Amyloid, tau tangles, global AD pathology, and NIA Reagan), in MAP decedents using clinical measures collected at the last visit as predictors. ROS cohort was used as an independent validation and test data. We validated these models in ROS decedents and applied the models to baseline clinical data of ROS participants to infer baseline ADNC traits. Baseline clinical data were collected an average of 8 years before the last follow up. We used Cox proportional hazard models to test if inferred baseline ADNC traits predicted incident AD dementia (ADD). In addition, two sample t tests were used to examine if inferred baseline ADNC traits predicted adults with a high risk of pathologic AD profiled at death. Results: By applying imputation models to clinical measures collected at the last visit in ROS to validate the imputation models, we obtained predicted R2 as 0.188 for beta Amyloid, 0.316 for tau tangles, and 0.262 for global AD pathology. The prediction area under the receiver operating characteristic curve (AUC) for the dichotomous NIA Reagan was 0.765. All four inferred ADNC traits at the last visit strongly discriminated postmortem NIA Reagan status (pvalues <10E-28). The inferred baseline levels of all four ADNC traits predicted ADD, with higher accuracies for predicting ADD in Year 3 (AUC ranging in 0.861 and 0.919) versus Year 5 (AUC from 0.842 to 0.896), and the highest accuracy was obtained using inferred NIA Reagan status. The inferred baseline levels of all four ADNC traits significantly discriminate individuals with postmortem pathologic AD (all pvalues < 1.5E-7). Conclusions: Inferred baseline levels of ADNC traits derived from clinical measures discriminate adults at risk for ADD and pathologic AD profiled at death. Further studies are needed to determine if repeated measures of inferred ADNC traits can be used to monitor the accumulation of ADNC traits during the prolonged course of AD.

[1]  C. Gaiteri,et al.  Cortical proteins may provide motor resilience in older adults , 2021, Scientific Reports.

[2]  W. Jagust,et al.  18F-flortaucipir PET to autopsy comparisons in Alzheimer's disease and other neurodegenerative diseases. , 2020, Brain : a journal of neurology.

[3]  M. Boenink,et al.  Biomarkers for dementia: too soon for routine clinical use , 2020, The Lancet Neurology.

[4]  C. Jack,et al.  Amyloid-PET and 18F-FDG-PET in the diagnostic investigation of Alzheimer's disease and other dementias , 2020, The Lancet Neurology.

[5]  A. Grumezescu,et al.  Body Fluid Biomarkers for Alzheimer’s Disease—An Up-To-Date Overview , 2020, Biomedicines.

[6]  Rene L. Utianski,et al.  Sensitivity–Specificity of Tau and Amyloid β Positron Emission Tomography in Frontotemporal Lobar Degeneration , 2020, Annals of neurology.

[7]  Jiashi Feng,et al.  Predicting Alzheimer’s disease progression using deep recurrent neural networks✩ , 2019, NeuroImage.

[8]  Justin M. Luningham,et al.  Bayesian Genome-wide TWAS method to leverage both cis- and trans- eQTL information through summary statistics , 2020, bioRxiv.

[9]  D. Bennett,et al.  Normative Cognitive Decline in Old Age , 2020, Annals of neurology.

[10]  K. Blennow,et al.  Plasma P-tau181 in Alzheimer’s disease: relationship to other biomarkers, differential diagnosis, neuropathology and longitudinal progression to Alzheimer’s dementia , 2020, Nature Medicine.

[11]  W. M. van der Flier,et al.  CCL23: A Chemokine Associated with Progression from Mild Cognitive Impairment to Alzheimer's Disease. , 2020, Journal of Alzheimer's disease : JAD.

[12]  Shuai Cheng Li,et al.  I-Impute: a self-consistent method to impute single cell RNA sequencing data , 2019, BMC Genomics.

[13]  G. Frisoni,et al.  miR-146a and miR-181a are involved in the progression of mild cognitive impairment to Alzheimer's disease , 2019, Neurobiology of Aging.

[14]  S. Leurgans,et al.  Common age‐related neuropathologies and yearly variability in cognition , 2019, Annals of clinical and translational neurology.

[15]  S. Leurgans,et al.  Attributable risk of Alzheimer's dementia attributed to age‐related neuropathologies , 2018, Annals of neurology.

[16]  Jingjing Yang,et al.  TIGAR: An Improved Bayesian Tool for Transcriptomic Data Imputation Enhances Gene Mapping of Complex Traits , 2018, bioRxiv.

[17]  Sterling C. Johnson,et al.  Integrated analysis of genomics, longitudinal metabolomics, and Alzheimer’s risk factors among 1,111 cohort participants , 2018, bioRxiv.

[18]  David A Bennett,et al.  Religious Orders Study and Rush Memory and Aging Project. , 2018, Journal of Alzheimer's disease : JAD.

[19]  Meike W. Vernooij,et al.  External validation of four dementia prediction models for use in the general community-dwelling population: a comparative analysis from the Rotterdam Study , 2018, European Journal of Epidemiology.

[20]  Thomas A. Gerds,et al.  riskRegression: Predicting the Risk of an Event using Cox Regression Models , 2017, R J..

[21]  Michael Wagner,et al.  Incremental value of biomarker combinations to predict progression of mild cognitive impairment to Alzheimer’s dementia , 2017, Alzheimer's Research & Therapy.

[22]  J. Mann,et al.  Utility of Molecular and Structural Brain Imaging to Predict Progression from Mild Cognitive Impairment to Dementia. , 2017, Journal of Alzheimer's disease : JAD.

[23]  E. Siemers,et al.  Amyloid status imputed from a multimodal classifier including structural MRI distinguishes progressors from nonprogressors in a mild Alzheimer's disease clinical trial cohort , 2016, Alzheimer's & Dementia.

[24]  Kaanan P. Shah,et al.  A gene-based association method for mapping traits using reference transcriptome data , 2015, Nature Genetics.

[25]  S. Leurgans,et al.  Sleep complaints and incident disability in a community-based cohort study of older persons. , 2014, The American journal of geriatric psychiatry : official journal of the American Association for Geriatric Psychiatry.

[26]  C. Jack,et al.  Biomarker Modeling of Alzheimer’s Disease , 2013, Neuron.

[27]  S. Joshi,et al.  Neuroimaging predictors of brain amyloidosis in mild cognitive impairment , 2013, Annals of neurology.

[28]  Thomas A Gerds,et al.  Absolute risk regression for competing risks: interpretation, link functions, and prediction , 2012, Statistics in medicine.

[29]  J. Schneider,et al.  National Institute on Aging–Alzheimer's Association guidelines for the neuropathologic assessment of Alzheimer's disease , 2012, Alzheimer's & Dementia.

[30]  Dietmar R. Thal,et al.  Stages of the Pathologic Process in Alzheimer Disease: Age Categories From 1 to 100 Years , 2011, Journal of neuropathology and experimental neurology.

[31]  Denise C. Park,et al.  Toward defining the preclinical stages of Alzheimer’s disease: Recommendations from the National Institute on Aging-Alzheimer's Association workgroups on diagnostic guidelines for Alzheimer's disease , 2011, Alzheimer's & Dementia.

[32]  D. Selkoe Alzheimer's disease. , 2011, Cold Spring Harbor perspectives in biology.

[33]  M. Albert,et al.  Introduction to Revised Criteria for the Diagnosis of Alzheimer ’ s Disease : National Institute on Aging and the Alzheimer Association Workgroups , 2011 .

[34]  R. Killiany,et al.  Subregions of the inferior parietal lobule are affected in the progression to Alzheimer's disease , 2010, Neurobiology of Aging.

[35]  Ariel Linden Measuring diagnostic and predictive accuracy in disease management: an introduction to receiver operating characteristic (ROC) analysis. , 2006, Journal of evaluation in clinical practice.

[36]  D. Bennett,et al.  Apolipoprotein E epsilon4 allele, AD pathology, and the clinical expression of Alzheimer's disease. , 2003, Neurology.

[37]  D.,et al.  Regression Models and Life-Tables , 2022 .