The ion core in RNA folding

Metal ions that link phosphates and guanine bases are necessary for the folding of an RNA enzyme. A magnesium ion core may be a common feature of RNA structure.

[1]  Francis Crick,et al.  Codon--anticodon pairing: the wobble hypothesis. , 1966, Journal of Molecular Biology.

[2]  J L Sussman,et al.  RNA-ligant interactions. (I) Magnesium binding sites in yeast tRNAPhe. , 1977, Nucleic acids research.

[3]  Wolfram Saenger,et al.  Principles of Nucleic Acid Structure , 1983 .

[4]  西村 善文 W. Saenger: Principles of Nucleic Acid Structure, Springer-Verlag, New York and Berlin, 1984, xx+556ページ, 24.5×16.5cm, 14,160円 (Springer Advanced Texts in Chemistry). , 1985 .

[5]  D. Turner,et al.  Improved predictions of secondary structures for RNA. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[6]  M. Zuker On finding all suboptimal foldings of an RNA molecule. , 1989, Science.

[7]  E. Westhof,et al.  Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. , 1990, Journal of molecular biology.

[8]  H. Tajmir-Riahi Interaction of purine nucleotides with cobalt-hexammine, cobalt-pentammine and cobalt-tetrammine cations. Evidence for the rigidity of adenosine and flexibility of guanosine and deoxyguanosine sugar conformations. , 1991, Journal of biomolecular structure & dynamics.

[9]  H. Heus,et al.  Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops. , 1991, Science.

[10]  H. Noller,et al.  Unusual resistance of peptidyl transferase to protein extraction procedures. , 1992, Science.

[11]  E. Dam,et al.  Structural and functional aspects of RNA pseudoknots. , 1992, Biochemistry.

[12]  I. Tinoco,et al.  A base-triple structural domain in RNA. , 1992, Biochemistry.

[13]  K. Flaherty,et al.  Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix , 1994, Nature.

[14]  K. Flaherty,et al.  Three-dimensional structure of a hammerhead ribozyme , 1994, Nature.

[15]  E. Westhof,et al.  Three-dimensional working model of M1 RNA, the catalytic RNA subunit of ribonuclease P from Escherichia coli. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[16]  D. Crothers,et al.  Bent helix formation between RNA hairpins with complementary loops. , 1995, Science.

[17]  G. Varani Exceptionally stable nucleic acid hairpins. , 1995, Annual review of biophysics and biomolecular structure.

[18]  A. Pardi,et al.  GNRA tetraloops make a U-turn. , 1995, RNA.

[19]  G. Varani,et al.  Divalent metal ion binding to a conserved wobble pair defining the upstream site of cleavage of group I self-splicing introns. , 1995, Nucleic acids research.

[20]  A. Klug,et al.  The crystal structure of an AII-RNAhammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage , 1995, Cell.

[21]  E. Guittet,et al.  Structural characterization of an intramolecular RNA triple helix by NMR spectroscopy. , 1995, European journal of biochemistry.

[22]  C. Kundrot,et al.  RNA Tertiary Structure Mediation by Adenosine Platforms , 1996, Science.

[23]  C. Kundrot,et al.  Crystal Structure of a Group I Ribozyme Domain: Principles of RNA Packing , 1996, Science.

[24]  G. Mohr,et al.  A tyrosyl-tRNA synthetase protein induces tertiary folding of the group I intron catalytic core. , 1996, Journal of molecular biology.

[25]  B. Stoddard,et al.  Capturing the Structure of a Catalytic RNA Intermediate: The Hammerhead Ribozyme , 1996, Science.

[26]  J. Doudna,et al.  Metal-binding sites in the major groove of a large ribozyme domain. , 1996, Structure.

[27]  J. Doudna,et al.  A magnesium ion core at the heart of a ribozyme domain , 1997, Nature Structural Biology.

[28]  I. Tinoco,et al.  The structure of an RNA "kissing" hairpin complex of the HIV TAR hairpin loop and its complement. , 1997, Journal of molecular biology.

[29]  E. Shakhnovich Theoretical studies of protein-folding thermodynamics and kinetics. , 1997, Current opinion in structural biology.

[30]  K. Dill,et al.  From Levinthal to pathways to funnels , 1997, Nature Structural Biology.

[31]  I. Tinoco,et al.  Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine. , 1997, Structure.

[32]  G. Varani RNA - Protein Intermolecular Recognition , 1997 .