Exon-based mapping of microarray probes: recovering differential gene expression signal in underpowered hypoxia experiment.

[1]  Stephanie Nonas,et al.  Bioinformatic identification of novel early stress response genes in rodent models of lung injury. , 2005, American journal of physiology. Lung cellular and molecular physiology.

[2]  H. Beppu,et al.  Bone Morphogenetic Protein (BMP) Type II Receptor Deletion Reveals BMP Ligand-specific Gain of Signaling in Pulmonary Artery Smooth Muscle Cells* , 2005, Journal of Biological Chemistry.

[3]  Isaac S. Kohane,et al.  Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements , 2005, BMC Bioinformatics.

[4]  Steen Knudsen,et al.  Alternative mapping of probes to genes for Affymetrix chips , 2004, BMC Bioinformatics.

[5]  Zoltan Szallasi,et al.  Increased measurement accuracy for sequence-verified microarray probes. , 2004, Physiological genomics.

[6]  R. Hebbel,et al.  Endothelial cell expression of tissue factor in sickle mice is augmented by hypoxia/reoxygenation and inhibited by lovastatin. , 2004, Blood.

[7]  Eric P. Hoffman,et al.  The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface , 2004, Nucleic Acids Res..

[8]  Jae K. Lee,et al.  Local-pooled-error test for identifying differentially expressed genes with a small number of replicated microarrays , 2003, Bioinform..

[9]  I. Pastan,et al.  Cloning, molecular characterization, and expression analysis of Copine 8. , 2003, Biochemical and biophysical research communications.

[10]  T. Speed,et al.  Summaries of Affymetrix GeneChip probe level data. , 2003, Nucleic acids research.

[11]  F. Massó,et al.  Endothelin-1 and functional tissue factor: a possible relationship with severity in primary pulmonary hypertension , 2003, Heart and Vessels.

[12]  Rafael A. Irizarry,et al.  An R Package for Analyses of Affymetrix Oligonucleotide Arrays , 2003 .

[13]  O. Hankinson,et al.  Mitogen‐inducible gene 6 (MIG‐6), adipophilin and tuftelin are inducible by hypoxia , 2002, FEBS letters.

[14]  Tom H. Pringle,et al.  The human genome browser at UCSC. , 2002, Genome research.

[15]  D. Irwin.  Ancient duplications of the human proglucagon gene. , 2002, Genomics.

[16]  W. J. Kent,et al.  BLAT--the BLAST-like alignment tool. , 2002, Genome research.

[17]  M. Blagosklonny,et al.  The Regulation of Hypoxic Genes by Calcium Involves c-Jun/AP-1, Which Cooperates with Hypoxia-Inducible Factor 1 in Response to Hypoxia , 2002, Molecular and Cellular Biology.

[18]  Stuart Schwartz,et al.  Human-specific duplication and mosaic transcripts: the recent paralogous structure of chromosome 22. , 2002, American journal of human genetics.

[19]  E. Eichler,et al.  Recent duplication, domain accretion and the dynamic mutation of the human genome. , 2001, Trends in genetics : TIG.

[20]  R. Tibshirani,et al.  Significance analysis of microarrays applied to the ionizing radiation response , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[21]  Gen Tamiya,et al.  Complete sequence and gene map of a human major histocompatibility complex , 1999 .

[22]  Complete sequence and gene map of a human major histocompatibility complex. The MHC sequencing consortium. , 1999, Nature.

[23]  S. P. Fodor,et al.  High density synthetic oligonucleotide arrays , 1999, Nature Genetics.