A parallel MR imaging method using multilayer perceptron

Purpose: To reconstruct MR images from subsampled data, we propose a fast reconstruction method using the multilayer perceptron (MLP) algorithm. Methods and materials: We applied MLP to reduce aliasing artifacts generated by subsampling in k‐space. The MLP is learned from training data to map aliased input images into desired alias‐free images. The input of the MLP is all voxels in the aliased lines of multichannel real and imaginary images from the subsampled k‐space data, and the desired output is all voxels in the corresponding alias‐free line of the root‐sum‐of‐squares of multichannel images from fully sampled k‐space data. Aliasing artifacts in an image reconstructed from subsampled data were reduced by line‐by‐line processing of the learned MLP architecture. Results: Reconstructed images from the proposed method are better than those from compared methods in terms of normalized root‐mean‐square error. The proposed method can be applied to image reconstruction for any k‐space subsampling patterns in a phase encoding direction. Moreover, to further reduce the reconstruction time, it is easily implemented by parallel processing. Conclusion: We have proposed a reconstruction method using machine learning to accelerate imaging time, which reconstructs high‐quality images from subsampled k‐space data. It shows flexibility in the use of k‐space sampling patterns, and can reconstruct images in real time.

[1]  Geoffrey E. Hinton,et al.  Learning representations by back-propagating errors , 1986, Nature.

[2]  Ning Qian,et al.  On the momentum term in gradient descent learning algorithms , 1999, Neural Networks.

[3]  P. Boesiger,et al.  SENSE: Sensitivity encoding for fast MRI , 1999, Magnetic resonance in medicine.

[4]  Robin M Heidemann,et al.  Generalized autocalibrating partially parallel acquisitions (GRAPPA) , 2002, Magnetic resonance in medicine.

[5]  Peter Boesiger,et al.  k‐t BLAST and k‐t SENSE: Dynamic MRI with high frame rate exploiting spatiotemporal correlations , 2003, Magnetic resonance in medicine.

[6]  S. Schoenberg,et al.  Practical approaches to the evaluation of signal‐to‐noise ratio performance with parallel imaging: Application with cardiac imaging and a 32‐channel cardiac coil , 2005, Magnetic resonance in medicine.

[7]  K. R. Ramakrishnan,et al.  Parallel Magnetic Resonance Imaging using Neural Networks , 2007, 2007 IEEE International Conference on Image Processing.

[8]  D. Donoho,et al.  Sparse MRI: The application of compressed sensing for rapid MR imaging , 2007, Magnetic resonance in medicine.

[9]  M. Lustig,et al.  SPIRiT: Iterative self‐consistent parallel imaging reconstruction from arbitrary k‐space , 2010, Magnetic resonance in medicine.

[10]  Yoshua Bengio,et al.  Understanding the difficulty of training deep feedforward neural networks , 2010, AISTATS.

[11]  Yoshua Bengio,et al.  Deep Sparse Rectifier Neural Networks , 2011, AISTATS.

[12]  David Zhang,et al.  FSIM: A Feature Similarity Index for Image Quality Assessment , 2011, IEEE Transactions on Image Processing.

[13]  Yoram Bresler,et al.  MR Image Reconstruction From Highly Undersampled k-Space Data by Dictionary Learning , 2011, IEEE Transactions on Medical Imaging.

[14]  Stefan Harmeling,et al.  Image denoising: Can plain neural networks compete with BM3D? , 2012, 2012 IEEE Conference on Computer Vision and Pattern Recognition.

[15]  Tara N. Sainath,et al.  Deep Neural Networks for Acoustic Modeling in Speech Recognition: The Shared Views of Four Research Groups , 2012, IEEE Signal Processing Magazine.

[16]  L. Ying,et al.  Nonlinear GRAPPA: A kernel approach to parallel MRI reconstruction , 2012, Magnetic resonance in medicine.

[17]  K. Bredies,et al.  Parallel imaging with nonlinear reconstruction using variational penalties , 2012, Magnetic resonance in medicine.

[18]  Kenneth A. Loparo,et al.  MR Pulse Sequence Design with Artificial Neural Networks , 2012 .

[19]  Geoffrey E. Hinton,et al.  ImageNet classification with deep convolutional neural networks , 2012, Commun. ACM.

[20]  Klaus-Robert Müller,et al.  Efficient BackProp , 2012, Neural Networks: Tricks of the Trade.

[21]  Tara N. Sainath,et al.  Deep Neural Networks for Acoustic Modeling in Speech Recognition , 2012 .

[22]  Jue Zhang,et al.  MRI Based Artificial Neural Network Model Used in Prostate Cancer Detection , 2012 .

[23]  Justin P. Haldar,et al.  Low-Rank Modeling of Local $k$-Space Neighborhoods (LORAKS) for Constrained MRI , 2014, IEEE Transactions on Medical Imaging.

[24]  Yoshua Bengio,et al.  How transferable are features in deep neural networks? , 2014, NIPS.

[25]  Nitish Srivastava,et al.  Dropout: a simple way to prevent neural networks from overfitting , 2014, J. Mach. Learn. Res..

[26]  J. Haldar Low-Rank Modeling of Local k-Space Neighborhoods ( LORAKS ) : Implementation and Examples for Reproducible Research , 2014 .

[27]  Trevor Darrell,et al.  Caffe: Convolutional Architecture for Fast Feature Embedding , 2014, ACM Multimedia.

[28]  Michael Elad,et al.  Calibrationless parallel imaging reconstruction based on structured low‐rank matrix completion , 2013, Magnetic resonance in medicine.

[29]  Jimmy Ba,et al.  Adam: A Method for Stochastic Optimization , 2014, ICLR.

[30]  Feng Huang,et al.  PROMISE: Parallel‐imaging and compressed‐sensing reconstruction of multicontrast imaging using SharablE information , 2015, Magnetic resonance in medicine.

[31]  Dumitru Erhan,et al.  Going deeper with convolutions , 2014, 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[32]  Ronald M. Summers,et al.  Deep Learning in Medical Imaging: Overview and Future Promise of an Exciting New Technique , 2016 .

[33]  Guigang Zhang,et al.  Deep Learning , 2016, Int. J. Semantic Comput..

[34]  Daniel Cremers,et al.  q-Space Deep Learning: Twelve-Fold Shorter and Model-Free Diffusion MRI Scans , 2016, IEEE Transactions on Medical Imaging.

[35]  Demis Hassabis,et al.  Mastering the game of Go with deep neural networks and tree search , 2016, Nature.

[36]  Thomas Pock,et al.  Learning a Variational Model for Compressed Sensing MRI Reconstruction , 2016 .

[37]  Hyun Wook Park,et al.  Multi‐contrast MR image denoising for parallel imaging using multilayer perceptron , 2016, Int. J. Imaging Syst. Technol..

[38]  Jingwei Zhuo,et al.  P‐LORAKS: Low‐rank modeling of local k‐space neighborhoods with parallel imaging data , 2016, Magnetic resonance in medicine.

[39]  Nico Karssemeijer,et al.  Using deep learning to segment breast and fibroglandular tissue in MRI volumes , 2017, Medical physics.

[40]  Xiao Han,et al.  MR‐based synthetic CT generation using a deep convolutional neural network method , 2017, Medical physics.

[41]  Ki Hwan Kim,et al.  Artificial neural network for suppression of banding artifacts in balanced steady-state free precession MRI. , 2017, Magnetic resonance imaging.