Drugging the undruggable: a computational chemist's view of KRASG12C.
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Michael S Bodnarchuk | Jason G Kettle | Graeme Robb | Doyle J Cassar | Richard A Ward | G. Robb | R. Ward | J. Kettle | M. Bodnarchuk
[1] Doyle J Cassar,et al. Covalent inhibitors of the GTPase KRASG12C: a review of the patent literature , 2020, Expert opinion on therapeutic patents.
[2] Narcis Fernandez-Fuentes,et al. Small molecule inhibitors of RAS-effector protein interactions derived using an intracellular antibody fragment , 2018, Nature Communications.
[3] Caterina Barillari,et al. Classification of water molecules in protein binding sites. , 2007, Journal of the American Chemical Society.
[4] B. Berne,et al. Role of the active-site solvent in the thermodynamics of factor Xa ligand binding. , 2008, Journal of the American Chemical Society.
[5] Richard Lonsdale,et al. Expanding the Armory: Predicting and Tuning Covalent Warhead Reactivity , 2017, J. Chem. Inf. Model..
[6] Malcolm Anderson,et al. Small molecule binding sites on the Ras:SOS complex can be exploited for inhibition of Ras activation. , 2015, Journal of medicinal chemistry.
[7] Gregory A Ross,et al. Water Sites, Networks, And Free Energies with Grand Canonical Monte Carlo. , 2015, Journal of the American Chemical Society.
[8] H. Briem,et al. Discovery of potent SOS1 inhibitors that block RAS activation via disruption of the RAS–SOS1 interaction , 2019, Proceedings of the National Academy of Sciences.
[9] R. Lonsdale,et al. Structure-based design of targeted covalent inhibitors. , 2018, Chemical Society reviews.
[10] Gregory A Ross,et al. Ligand Binding Free Energies with Adaptive Water Networks: Two-Dimensional Grand Canonical Alchemical Perturbations , 2018, Journal of chemical theory and computation.
[11] Yi Liu,et al. The reactivity-driven biochemical mechanism of covalent KRASG12C inhibitors , 2018, Nature Structural & Molecular Biology.
[12] Robert Abel,et al. Motifs for molecular recognition exploiting hydrophobic enclosure in protein–ligand binding , 2007, Proceedings of the National Academy of Sciences.
[13] Yi Liu,et al. Selective Inhibition of Oncogenic KRAS Output with Small Molecules Targeting the Inactive State. , 2016, Cancer discovery.
[14] P. Jänne,et al. A phase I, open-label, dose-escalation trial of BI 1701963 as monotherapy and in combination with trametinib in patients with KRAS mutated advanced or metastatic solid tumors. , 2020 .
[15] Kevan M. Shokat,et al. K-Ras(G12C) inhibitors allosterically control GTP affinity and effector interactions , 2013, Nature.
[16] Paul Labute,et al. LowModeMD - Implicit Low-Mode Velocity Filtering Applied to Conformational Search of Macrocycles and Protein Loops , 2010, J. Chem. Inf. Model..
[17] Jennifer L. Knight,et al. Accurate and reliable prediction of relative ligand binding potency in prospective drug discovery by way of a modern free-energy calculation protocol and force field. , 2015, Journal of the American Chemical Society.
[18] M. Koegl,et al. Drugging an undruggable pocket on KRAS , 2019, Proceedings of the National Academy of Sciences.
[19] Kai Zhu,et al. Docking Covalent Inhibitors: A Parameter Free Approach To Pose Prediction and Scoring , 2014, J. Chem. Inf. Model..
[20] Jonathan W. Essex,et al. Strategies to Calculate Water Binding Free Energies in Protein-Ligand Complexes , 2014, J. Chem. Inf. Model..
[21] Michael S Bodnarchuk,et al. Utilizing Grand Canonical Monte Carlo Methods in Drug Discovery. , 2019, ACS medicinal chemistry letters.
[22] J. Desai,et al. Phase 1 study evaluating the safety, tolerability, pharmacokinetics (PK), and efficacy of AMG 510, a novel small molecule KRASG12C inhibitor, in advanced solid tumors. , 2019, Journal of Clinical Oncology.
[23] Carla Mattos,et al. A comprehensive survey of Ras mutations in cancer. , 2012, Cancer research.
[24] Doyle J Cassar,et al. Structure-based design and pharmacokinetic optimization of covalent allosteric inhibitors of the mutant GTPase KRASG12C. , 2020, Journal of medicinal chemistry.
[25] N. Chen,et al. Discovery of a covalent inhibitor of KRASG12C (AMG 510) for the treatment of solid tumors. , 2019, Journal of medicinal chemistry.
[26] P. Zarrinkar,et al. Targeting KRAS Mutant Cancers with a Covalent G12C-Specific Inhibitor , 2018, Cell.
[27] G. Vigers,et al. Identification of the Clinical Development Candidate MRTX849, a Covalent KRASG12C Inhibitor for the Treatment of Cancer. , 2020, Journal of medicinal chemistry.
[28] Shuai Liu,et al. Is Ring Breaking Feasible in Relative Binding Free Energy Calculations? , 2015, J. Chem. Inf. Model..
[29] Michael S Bodnarchuk,et al. Water, water, everywhere… It's time to stop and think. , 2016, Drug discovery today.
[30] K. Haigis. KRAS Alleles: The Devil Is in the Detail. , 2017, Trends in cancer.
[31] Themis Lazaridis,et al. Inhomogeneous Fluid Approach to Solvation Thermodynamics. 2. Applications to Simple Fluids , 1998 .
[32] T. Lazaridis. Inhomogeneous Fluid Approach to Solvation Thermodynamics. 1. Theory , 1998 .