FieldML, a proposed open standard for the Physiome project for mathematical model representation

[1]  P. Lamata,et al.  Share and enjoy: anatomical models database—generating and sharing cardiovascular model data using web services , 2013, Medical & Biological Engineering & Computing.

[2]  Pablo Lamata,et al.  Preterm Heart in Adult Life: Cardiovascular Magnetic Resonance Reveals Distinct Differences in Left Ventricular Mass, Geometry, and Function , 2012, Circulation.

[3]  Philipp Beerbaum,et al.  Accuracy vs. computational time: translating aortic simulations to the clinic. , 2012, Journal of biomechanics.

[4]  Thomas Hauser,et al.  Recent Updates to the CFD General Notation System (CGNS) , 2012 .

[5]  Pablo Lamata,et al.  An accurate, fast and robust method to generate patient-specific cubic Hermite meshes , 2011, Medical Image Anal..

[6]  Heye Zhang,et al.  OpenCMISS: a multi-physics & multi-scale computational infrastructure for the VPH/Physiome project. , 2011, Progress in biophysics and molecular biology.

[7]  S Niederer,et al.  Inter-model consistency and complementarity: learning from ex-vivo imaging and electrophysiological data towards an integrated understanding of cardiac physiology. , 2011, Progress in biophysics and molecular biology.

[8]  Alistair A. Young,et al.  Myocardial Contractility and Regional Work throughout the Cardiac Cycle Using FEM and MRI , 2011, STACOM.

[9]  Alistair A. Young,et al.  The Cardiac Atlas Project—an imaging database for computational modeling and statistical atlases of the heart , 2011, Bioinform..

[10]  Viatcheslav Gurev,et al.  Models of cardiac electromechanics based on individual hearts imaging data , 2011, Biomechanics and modeling in mechanobiology.

[11]  Peter J. Hunter,et al.  Bioinformatics Applications Note Databases and Ontologies the Physiome Model Repository 2 , 2022 .

[12]  N. Trayanova,et al.  Erratum to: Models of cardiac electromechanics based on individual hearts imaging data , 2011 .

[13]  Alan Garny,et al.  Biological Modelling Using CellML and MATLAB , 2010 .

[14]  Alistair A. Young,et al.  The Cardiac Atlas Project: Development of a Framework Integrating Cardiac Images and Models , 2010, STACOM/CESC.

[15]  Melanie I. Stefan,et al.  BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models , 2010, BMC Systems Biology.

[16]  Hervé Delingette,et al.  Sharing and reusing cardiovascular anatomical models over the Web: a step towards the implementation of the virtual physiological human project , 2010, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[17]  Alfio Quarteroni,et al.  A vision and strategy for the virtual physiological human in 2010 and beyond , 2010, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[18]  David P. Nickerson,et al.  An overview of the CellML API and its implementation , 2010, BMC Bioinformatics.

[19]  Alexander G. Fletcher,et al.  Chaste: A test-driven approach to software development for biological modelling , 2009, Comput. Phys. Commun..

[20]  Peter J. Hunter,et al.  FieldML: concepts and implementation , 2009, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[21]  Peter J. Hunter,et al.  CellML metadata standards, associated tools and repositories , 2009, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[22]  P. Hunter,et al.  The CellML Model Repository , 2008, Bioinform..

[23]  Rodrigo Weber dos Santos,et al.  CellML and associated tools and techniques , 2008, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[24]  E.R. Mark,et al.  Enhancements to the eXtensible Data Model and Format (XDMF) , 2007, 2007 DoD High Performance Computing Modernization Program Users Group Conference.

[25]  Benjamin S. Kirk,et al.  Library for Parallel Adaptive Mesh Refinement / Coarsening Simulations , 2006 .

[26]  K. T. ten Tusscher,et al.  Alternans and spiral breakup in a human ventricular tissue model. , 2006, American journal of physiology. Heart and circulatory physiology.

[27]  Peter J. Hunter,et al.  An Overview of CellML 1.1, a Biological Model Description Language , 2003, Simul..

[28]  Hiroaki Kitano,et al.  The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models , 2003, Bioinform..

[29]  John M. Lee.  Introduction to Smooth Manifolds , 2002 .

[30]  Diane M. A. Poirier,et al.  CFD general notation system (CGNS) - Status and future directions , 2002 .

[31]  Mark C. Miller,et al.  Enabling Interoperation of High Performance, Scientific Computing Applications: Modeling Scientific Data with the Sets & Fields (SAF) Modeling System , 2001, International Conference on Computational Science.

[32]  P. Hunter,et al.  Laminar structure of the heart: a mathematical model. , 1997, The American journal of physiology.

[33]  L. A. Schoof,et al.  EXODUS II: A finite element data model , 1994 .

[34]  P. Hunter,et al.  Mathematical model of geometry and fibrous structure of the heart. , 1991, The American journal of physiology.

[35]  Russ Rew,et al.  NetCDF: an interface for scientific data access , 1990, IEEE Computer Graphics and Applications.

[36]  Ken Shoemake,et al.  Animating rotation with quaternion curves , 1985, SIGGRAPH.

[37]  Alistair A. Young,et al.  Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges , 2013, Lecture Notes in Computer Science.

[38]  Tomi Kauppinen,et al.  Linked Open Science-Communicating, Sharing and Evaluating Data, Methods and Results for Executable Papers , 2011, ICCS.

[39]  David Orchard,et al.  XML Linking Language (XLink) , 2001 .

[40]  Stephen M. Watt,et al.  Mathematical Markup Language (MathML) Version 3.0 , 2001, WWW 2001.

[41]  P. Hunter,et al.  Computational Mechanics of the Heart , 2000 .

[42]  Dominic A. Orchard,et al.  XML Linking Language (XLink) Version 1. 0. World Wide Web Consortium, Proposed Recommendation PR - x , 2000 .

[43]  P. Hunter,et al.  Computational mechanics of the heart : From tissue structure to ventricular function , 2000 .