NMR analysis of cross strand aromatic interactions in an 8 residue hairpin and a 14 residue three stranded β-sheet peptide.
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P. Balaram | R. Sonti | S. Ragothama | R. Rai
[1] B. Solomonov,et al. Solvophobic effects and relationships between the Gibbs energy and enthalpy for the solvation process , 2011 .
[2] F. Diederich,et al. Aromatic rings in chemical and biological recognition: energetics and structures. , 2011, Angewandte Chemie.
[3] B. Halle,et al. Protein cold denaturation as seen from the solvent. , 2009, Journal of the American Chemical Society.
[4] M. Jiménez,et al. The turn sequence directs β‐ strand alignment in designed β‐hairpins , 2008, Protein science : a publication of the Protein Society.
[5] John A. Robinson. Beta-hairpin peptidomimetics: design, structures and biological activities. , 2008, Accounts of chemical research.
[6] C. David Sherrill,et al. High-Accuracy Quantum Mechanical Studies of π−π Interactions in Benzene Dimers , 2006 .
[7] P. Balaram,et al. Design of a peptide hairpin containing a central three-residue loop. , 2006, Journal of the American Chemical Society.
[8] P. Balaram,et al. NMR analysis of aromatic interactions in designed peptide beta-hairpins. , 2006, Journal of the American Chemical Society.
[9] P. Balaram,et al. Molecular conformation and packing of peptide beta hairpins in the solid state: structures of two synthetic octapeptides containing 1-aminocycloalkane-1-carboxylic acid residues at the i+2 position of the beta turn. , 2005, Chemistry.
[10] S. Gellman,et al. Effects of alternative side chain pairings and reverse turn sequences on antiparallel sheet structure in beta-peptide hairpins. , 2004, Organic letters.
[11] P. Balaram,et al. Structure and assembly of designed beta-hairpin peptides in crystals as models for beta-sheet aggregation. , 2004, Biochemistry.
[12] P. Balaram,et al. Non-protein amino acids in peptide design , 2003 .
[13] E. Pérez-Payá,et al. Insights into the determinants of β-sheet stability: 1H and 13C NMR conformational investigation of three-stranded antiparallel β-sheet-forming peptides , 2003 .
[14] F. Diederich,et al. Interactions with aromatic rings in chemical and biological recognition. , 2003, Angewandte Chemie.
[15] Marcey L Waters,et al. Aromatic interactions in model systems. , 2002, Current opinion in chemical biology.
[16] P. Balaram,et al. A crystalline beta-hairpin peptide nucleated by a type I' Aib-D-Ala beta-turn: evidence for cross-strand aromatic interactions. , 2002, Angewandte Chemie.
[17] Edward F. Valeev,et al. Estimates of the Ab Initio Limit for π−π Interactions: The Benzene Dimer , 2002 .
[18] Sara M. Butterfield,et al. Contribution of Aromatic Interactions to α-Helix Stability , 2002 .
[19] C. Tatko,et al. Selective Aromatic Interactions in β-Hairpin Peptides , 2002 .
[20] Torsten Herrmann,et al. Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. , 2002, Journal of molecular biology.
[21] P. Balaram,et al. Design and construction of an open multistranded beta-sheet polypeptide stabilized by a disulfide bridge. , 2002, Journal of the American Chemical Society.
[22] S. Tsuzuki,et al. Origin of attraction and directionality of the pi/pi interaction: model chemistry calculations of benzene dimer interaction. , 2002, Journal of the American Chemical Society.
[23] P. Balaram,et al. Design of folded peptides. , 2001, Chemical reviews.
[24] N. Skelton,et al. Tryptophan zippers: Stable, monomeric β-hairpins , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[25] I. Karle,et al. Designed beta-hairpin peptides with defined tight turn stereochemistry. , 2001, Biopolymers.
[26] T. Szyperski,et al. Aromatic ring-flipping in supercooled water: implications for NMR-based structural biology of proteins. , 2001, Journal of the American Chemical Society.
[27] A. Cochran,et al. Designing Stable β-Hairpins: Energetic Contributions from Cross-Strand Residues , 2000 .
[28] P. Balaram,et al. De novo protein design: crystallographic characterization of a synthetic peptide containing independent helical and hairpin domains. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[29] Chittaranjan Das,et al. A Designed Three Stranded beta-Sheet Peptide as a Multiple beta-Hairpin Model , 1998 .
[30] S. Gellman,et al. Rules for Antiparallel β-Sheet Design: d-Pro-Gly Is Superior to l-Asn-Gly for β-Hairpin Nucleation1 , 1998 .
[31] K. Wüthrich,et al. Torsion angle dynamics for NMR structure calculation with the new program DYANA. , 1997, Journal of molecular biology.
[32] P. Balaram,et al. NMR Analysis of a Conformational Transition in an Acyclic Peptide. Model System for Studying Helix Unfolding , 1996 .
[33] Pavel Hobza,et al. Potential Energy Surface for the Benzene Dimer. Results of ab Initio CCSD(T) Calculations Show Two Nearly Isoenergetic Structures: T-Shaped and Parallel-Displaced , 1996 .
[34] Peter A. Kollman,et al. Benzene Dimer: A Good Model for π−π Interactions in Proteins? A Comparison between the Benzene and the Toluene Dimers in the Gas Phase and in an Aqueous Solution , 1996 .
[35] E. Bernstein,et al. Aromatic van der Waals Clusters: Structure and Nonrigidity , 1996 .
[36] I. Karle,et al. A designed beta-hairpin peptide in crystals. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[37] Masuhiro Mikami,et al. Basis set effects on the calculated bonding energies of neutral benzene dimers: importance of diffuse polarization functions , 1996 .
[38] H. Nakamura,et al. Roles of electrostatic interaction in proteins , 1996, Quarterly Reviews of Biophysics.
[39] K Wüthrich,et al. The program XEASY for computer-supported NMR spectral analysis of biological macromolecules , 1995, Journal of biomolecular NMR.
[40] S. Gellman,et al. MIRROR IMAGE REVERSE TURNS PROMOTE BETA -HAIRPIN FORMATION , 1994 .
[41] Pavel Hobza,et al. Potential Energy Surface of the Benzene Dimer: Ab Initio Theoretical Study , 1994 .
[42] K. Wüthrich,et al. Disulfide bond isomerization in BPTI and BPTI(G36S): an NMR study of correlated mobility in proteins. , 1993, Biochemistry.
[43] B. Kronberg,et al. A thermodynamic study of the solvophobic effect in formamide solutions of nonpolar molecules , 1993 .
[44] Paul A. Keifer,et al. Pure absorption gradient enhanced heteronuclear single quantum correlation spectroscopy with improved sensitivity , 1992 .
[45] Charles L. Brooks,et al. The thermodynamics of solvophobic effects: A molecular‐dynamics study of n‐butane in carbon tetrachloride and water , 1990 .
[46] K. Wüthrich,et al. Efficient purging scheme for proton-detected heteronuclear two-dimensional NMR , 1988 .
[47] A. Furano,et al. Brain "identifier sequence". , 1986, Science.
[48] G A Petsko,et al. Aromatic-aromatic interaction: a mechanism of protein structure stabilization. , 1985, Science.
[49] C. Warren,et al. Structure determination of a tetrasaccharide: transient nuclear Overhauser effects in the rotating frame , 1984 .
[50] Richard R. Ernst,et al. Coherence transfer by isotropic mixing: Application to proton correlation spectroscopy , 1983 .
[51] Ad Bax,et al. Investigation of complex networks of spin-spin coupling by two-dimensional NMR , 1981 .
[52] L. Pauling. Diamagnetic anisotropy of the peptide group. , 1979, Proceedings of the National Academy of Sciences of the United States of America.
[53] K. Wüthrich,et al. NMR investigations of the dynamics of the aromatic amino acid residues in the basic pancreatic trypsin inhibitor , 1975, FEBS letters.
[54] P. Balaram,et al. Aromatic interactions in model peptide β‐hairpins: Ring current effects on proton chemical shifts , 2012, Biopolymers.
[55] P. Balaram,et al. Conformations of heterochiral and homochiral proline‐pseudoproline segments in peptides: Context dependent cis–trans peptide bond isomerization , 2009, Biopolymers.
[56] T. Keiderling,et al. Spectroscopic characterization of selected β- sheet hairpin models , 2002 .
[57] L. Serrano,et al. β-hairpin and β-sheet formation in designed linear peptides , 1999 .
[58] P. Balaram,et al. A four stranded beta-sheet structure in a designed, synthetic polypeptide , 1999 .
[59] S. Gellman. Minimal model systems for β-sheet secondary structure in proteins , 1998 .
[60] Christopher A. Hunter. ?-? interactions: the geometry and energetics of phenylalanine-phenylalanine interactions in proteins , 1991 .
[61] M. Vijayan,et al. X-Ray crystal structure of pivaloyl-D-Pro-L-Pro-L-Ala-N-methylamide; observation of a consecutive β-turn conformation , 1979 .