NMR analysis of cross strand aromatic interactions in an 8 residue hairpin and a 14 residue three stranded β-sheet peptide.

Cross strand aromatic interactions between a facing pair of phenylalanine residues in antiparallel β-sheet structures have been probed using two structurally defined model peptides. The octapeptide Boc-LFV(D)P(L)PLFV-OMe (peptide 1) favors the β-hairpin conformation nucleated by the type II' β-turn formed by the (D)Pro-(L)Pro segment, placing Phe2 and Phe7 side chains in proximity. Two centrally positioned (D)Pro-(L)Pro segments facilitate the three stranded β-sheet formation in the 14 residue peptide Boc-LFV(D)P(L)PLFVA(D)P(L)PLFV-OMe (peptide 2) in which the Phe2/Phe7 orientations are similar to that in the octapeptide. The anticipated folded conformations of peptides 1 and 2 are established by the delineation of intramolecularly hydrogen bonded NH groups and by the observation of specific cross strand NOEs. The observation of ring current shifted aromatic protons is a diagnostic of close approach of the Phe2 and Phe7 side chains. Specific assignment of aromatic proton resonances using HSQC and HSQC-TOCSY methods allow an analysis of interproton NOEs between the spatially proximate aromatic rings. This approach facilitates specific assignments in systems containing multiple aromatic rings in spectra at natural abundance. Evidence is presented for a dynamic process which invokes a correlated conformational change about the C(α)-C(β)(χ(1)) bond for the pair of interacting Phe residues. NMR results suggest that aromatic ring orientations observed in crystals are maintained in solution. Anomalous temperature dependence of ring current induced proton chemical shifts suggests that solvophobic effects may facilitate aromatic ring clustering in apolar solvents.

[1]  B. Solomonov,et al.  Solvophobic effects and relationships between the Gibbs energy and enthalpy for the solvation process , 2011 .

[2]  F. Diederich,et al.  Aromatic rings in chemical and biological recognition: energetics and structures. , 2011, Angewandte Chemie.

[3]  B. Halle,et al.  Protein cold denaturation as seen from the solvent. , 2009, Journal of the American Chemical Society.

[4]  M. Jiménez,et al.  The turn sequence directs β‐ strand alignment in designed β‐hairpins , 2008, Protein science : a publication of the Protein Society.

[5]  John A. Robinson Beta-hairpin peptidomimetics: design, structures and biological activities. , 2008, Accounts of chemical research.

[6]  C. David Sherrill,et al.  High-Accuracy Quantum Mechanical Studies of π−π Interactions in Benzene Dimers , 2006 .

[7]  P. Balaram,et al.  Design of a peptide hairpin containing a central three-residue loop. , 2006, Journal of the American Chemical Society.

[8]  P. Balaram,et al.  NMR analysis of aromatic interactions in designed peptide beta-hairpins. , 2006, Journal of the American Chemical Society.

[9]  P. Balaram,et al.  Molecular conformation and packing of peptide beta hairpins in the solid state: structures of two synthetic octapeptides containing 1-aminocycloalkane-1-carboxylic acid residues at the i+2 position of the beta turn. , 2005, Chemistry.

[10]  S. Gellman,et al.  Effects of alternative side chain pairings and reverse turn sequences on antiparallel sheet structure in beta-peptide hairpins. , 2004, Organic letters.

[11]  P. Balaram,et al.  Structure and assembly of designed beta-hairpin peptides in crystals as models for beta-sheet aggregation. , 2004, Biochemistry.

[12]  P. Balaram,et al.  Non-protein amino acids in peptide design , 2003 .

[13]  E. Pérez-Payá,et al.  Insights into the determinants of β-sheet stability: 1H and 13C NMR conformational investigation of three-stranded antiparallel β-sheet-forming peptides , 2003 .

[14]  F. Diederich,et al.  Interactions with aromatic rings in chemical and biological recognition. , 2003, Angewandte Chemie.

[15]  Marcey L Waters,et al.  Aromatic interactions in model systems. , 2002, Current opinion in chemical biology.

[16]  P. Balaram,et al.  A crystalline beta-hairpin peptide nucleated by a type I' Aib-D-Ala beta-turn: evidence for cross-strand aromatic interactions. , 2002, Angewandte Chemie.

[17]  Edward F. Valeev,et al.  Estimates of the Ab Initio Limit for π−π Interactions: The Benzene Dimer , 2002 .

[18]  Sara M. Butterfield,et al.  Contribution of Aromatic Interactions to α-Helix Stability , 2002 .

[19]  C. Tatko,et al.  Selective Aromatic Interactions in β-Hairpin Peptides , 2002 .

[20]  Torsten Herrmann,et al.  Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. , 2002, Journal of molecular biology.

[21]  P. Balaram,et al.  Design and construction of an open multistranded beta-sheet polypeptide stabilized by a disulfide bridge. , 2002, Journal of the American Chemical Society.

[22]  S. Tsuzuki,et al.  Origin of attraction and directionality of the pi/pi interaction: model chemistry calculations of benzene dimer interaction. , 2002, Journal of the American Chemical Society.

[23]  P. Balaram,et al.  Design of folded peptides. , 2001, Chemical reviews.

[24]  N. Skelton,et al.  Tryptophan zippers: Stable, monomeric β-hairpins , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[25]  I. Karle,et al.  Designed beta-hairpin peptides with defined tight turn stereochemistry. , 2001, Biopolymers.

[26]  T. Szyperski,et al.  Aromatic ring-flipping in supercooled water: implications for NMR-based structural biology of proteins. , 2001, Journal of the American Chemical Society.

[27]  A. Cochran,et al.  Designing Stable β-Hairpins: Energetic Contributions from Cross-Strand Residues , 2000 .

[28]  P. Balaram,et al.  De novo protein design: crystallographic characterization of a synthetic peptide containing independent helical and hairpin domains. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[29]  Chittaranjan Das,et al.  A Designed Three Stranded beta-Sheet Peptide as a Multiple beta-Hairpin Model , 1998 .

[30]  S. Gellman,et al.  Rules for Antiparallel β-Sheet Design: d-Pro-Gly Is Superior to l-Asn-Gly for β-Hairpin Nucleation1 , 1998 .

[31]  K. Wüthrich,et al.  Torsion angle dynamics for NMR structure calculation with the new program DYANA. , 1997, Journal of molecular biology.

[32]  P. Balaram,et al.  NMR Analysis of a Conformational Transition in an Acyclic Peptide. Model System for Studying Helix Unfolding , 1996 .

[33]  Pavel Hobza,et al.  Potential Energy Surface for the Benzene Dimer. Results of ab Initio CCSD(T) Calculations Show Two Nearly Isoenergetic Structures: T-Shaped and Parallel-Displaced , 1996 .

[34]  Peter A. Kollman,et al.  Benzene Dimer: A Good Model for π−π Interactions in Proteins? A Comparison between the Benzene and the Toluene Dimers in the Gas Phase and in an Aqueous Solution , 1996 .

[35]  E. Bernstein,et al.  Aromatic van der Waals Clusters: Structure and Nonrigidity , 1996 .

[36]  I. Karle,et al.  A designed beta-hairpin peptide in crystals. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[37]  Masuhiro Mikami,et al.  Basis set effects on the calculated bonding energies of neutral benzene dimers: importance of diffuse polarization functions , 1996 .

[38]  H. Nakamura,et al.  Roles of electrostatic interaction in proteins , 1996, Quarterly Reviews of Biophysics.

[39]  K Wüthrich,et al.  The program XEASY for computer-supported NMR spectral analysis of biological macromolecules , 1995, Journal of biomolecular NMR.

[40]  S. Gellman,et al.  MIRROR IMAGE REVERSE TURNS PROMOTE BETA -HAIRPIN FORMATION , 1994 .

[41]  Pavel Hobza,et al.  Potential Energy Surface of the Benzene Dimer: Ab Initio Theoretical Study , 1994 .

[42]  K. Wüthrich,et al.  Disulfide bond isomerization in BPTI and BPTI(G36S): an NMR study of correlated mobility in proteins. , 1993, Biochemistry.

[43]  B. Kronberg,et al.  A thermodynamic study of the solvophobic effect in formamide solutions of nonpolar molecules , 1993 .

[44]  Paul A. Keifer,et al.  Pure absorption gradient enhanced heteronuclear single quantum correlation spectroscopy with improved sensitivity , 1992 .

[45]  Charles L. Brooks,et al.  The thermodynamics of solvophobic effects: A molecular‐dynamics study of n‐butane in carbon tetrachloride and water , 1990 .

[46]  K. Wüthrich,et al.  Efficient purging scheme for proton-detected heteronuclear two-dimensional NMR , 1988 .

[47]  A. Furano,et al.  Brain "identifier sequence". , 1986, Science.

[48]  G A Petsko,et al.  Aromatic-aromatic interaction: a mechanism of protein structure stabilization. , 1985, Science.

[49]  C. Warren,et al.  Structure determination of a tetrasaccharide: transient nuclear Overhauser effects in the rotating frame , 1984 .

[50]  Richard R. Ernst,et al.  Coherence transfer by isotropic mixing: Application to proton correlation spectroscopy , 1983 .

[51]  Ad Bax,et al.  Investigation of complex networks of spin-spin coupling by two-dimensional NMR , 1981 .

[52]  L. Pauling Diamagnetic anisotropy of the peptide group. , 1979, Proceedings of the National Academy of Sciences of the United States of America.

[53]  K. Wüthrich,et al.  NMR investigations of the dynamics of the aromatic amino acid residues in the basic pancreatic trypsin inhibitor , 1975, FEBS letters.

[54]  P. Balaram,et al.  Aromatic interactions in model peptide β‐hairpins: Ring current effects on proton chemical shifts , 2012, Biopolymers.

[55]  P. Balaram,et al.  Conformations of heterochiral and homochiral proline‐pseudoproline segments in peptides: Context dependent cis–trans peptide bond isomerization , 2009, Biopolymers.

[56]  T. Keiderling,et al.  Spectroscopic characterization of selected β- sheet hairpin models , 2002 .

[57]  L. Serrano,et al.  β-hairpin and β-sheet formation in designed linear peptides , 1999 .

[58]  P. Balaram,et al.  A four stranded beta-sheet structure in a designed, synthetic polypeptide , 1999 .

[59]  S. Gellman Minimal model systems for β-sheet secondary structure in proteins , 1998 .

[60]  Christopher A. Hunter ?-? interactions: the geometry and energetics of phenylalanine-phenylalanine interactions in proteins , 1991 .

[61]  M. Vijayan,et al.  X-Ray crystal structure of pivaloyl-D-Pro-L-Pro-L-Ala-N-methylamide; observation of a consecutive β-turn conformation , 1979 .