Statistical Computing on Manifolds for Computational Anatomy

During the last decade, my main research topic was on medical image analysis, and more particularly on image registration. However, I was also following in background a more theoretical research track on statistical computing on manifolds. With the recent emergence of computational anatomy, this topic gained a lot of importance in the medical image analysis community. During the writing of this habilitation manuscript, I felt that it was time to present a more simple and uni ed view of how it works and why it can be important. This is why the usual short synthesis of the habilitation became a hundred pages long text where I tried to synthesizes the main notions of statistical computing on manifolds with application in registration and computational anatomy. Of course, this synthesis is centered on and illustrated by my personal research work.

[1]  Arthur W. Toga,et al.  Brain Image Analysis and Atlas Construction , 2000 .

[2]  Alan Edelman,et al.  The Geometry of Algorithms with Orthogonality Constraints , 1998, SIAM J. Matrix Anal. Appl..

[3]  Alejandro F. Frangi,et al.  Automatic Construction of 3D Statistical Deformation Models of the Brain using Non-Rigid Registration , 2003, IEEE Trans. Medical Imaging.

[4]  Rachid Deriche,et al.  A fast and rigorous anisotropic smoothing method for DT-MRI , 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

[5]  Matthew R. Pocock,et al.  Taverna: a tool for the composition and enactment of bioinformatics workflows , 2004, Bioinform..

[6]  V. Arsigny,et al.  A novel family of geometrical transformations: Polyrigid transformations. Application to the registration of histological slices , 2003 .

[7]  O. Ciccarelli,et al.  Diffusion MRI in multiple sclerosis , 2005, Neurology.

[8]  Vijay Kumar,et al.  Metrics and Connections for Rigid-Body Kinematics , 1999, Int. J. Robotics Res..

[9]  Alain Trouvé,et al.  Diffeomorphisms Groups and Pattern Matching in Image Analysis , 1998, International Journal of Computer Vision.

[10]  Nicholas Ayache,et al.  Multi-subject anatomo-functional classification for activation studies , 2004 .

[11]  William M. Wells,et al.  Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation , 2004, IEEE Transactions on Medical Imaging.

[12]  Nicholas Ayache,et al.  Towards Optical Biopsies with an Integrated Fibered Confocal Fluorescence Microscope , 2004, MICCAI.

[13]  Michael I. Miller,et al.  Deformable templates using large deformation kinematics , 1996, IEEE Trans. Image Process..

[14]  N. Ayache,et al.  Multimodal Image Registration by Maximization of the Correlation Ratio , 1998 .

[15]  J. M. Oller,et al.  AN EXPLICIT SOLUTION OF INFORMATION GEODESIC EQUATIONS FOR THE MULTIVARIATE NORMAL MODEL , 1991 .

[16]  Nicholas Ayache,et al.  A Log-Euclidean Framework for Statistics on Diffeomorphisms , 2006, MICCAI.

[17]  Luc Soler,et al.  An augmented reality system to guide radio‐frequency tumour ablation , 2005, Comput. Animat. Virtual Worlds.

[18]  Sébastien Ourselin,et al.  Reconstructing a 3D structure from serial histological sections , 2001, Image Vis. Comput..

[19]  Nicholas Ayache,et al.  Non-rigid MR/US registration for tracking brain deformations , 2001, Proceedings International Workshop on Medical Imaging and Augmented Reality.

[20]  Benny Lautrup,et al.  Brownian Warps: A Least Committed Prior for Non-rigid Registration , 2002, MICCAI.

[21]  Nicholas Ayache,et al.  Guidage de ponctions percutanées à l'aide d'un système de vision basé sur une méthode de recalage 3D/2D , 2003 .

[22]  R. Darling Martingales on noncompact manifolds : maximal inequalities and prescribed limits , 1996 .

[23]  David J. Hawkes,et al.  Voxel Similarity Measures for 3D Serial MR Brain Image Registration , 2000, IEEE Trans. Medical Imaging.

[24]  C. Y. Kaya,et al.  Geodesics and an optimal control algorithm , 1997, Proceedings of the 36th IEEE Conference on Decision and Control.

[25]  L. Skovgaard A Riemannian geometry of the multivariate normal model , 1984 .

[26]  Johan Montagnat,et al.  Flexible and Efficient Workflow Deployment of Data-Intensive Applications On Grids With MOTEUR , 2008, Int. J. High Perform. Comput. Appl..

[27]  J. Gee,et al.  Geodesic estimation for large deformation anatomical shape averaging and interpolation , 2004, NeuroImage.

[28]  N. Ayache,et al.  Clinical DT-MRI Estimation, Smoothing, and Fiber Tracking With Log-Euclidean Metrics , 2007 .

[29]  Robert J. Maciunas,et al.  Registration of head volume images using implantable fiducial markers , 1997, IEEE Transactions on Medical Imaging.

[30]  R Stefanescu,et al.  A Grid service for the interactive use of a parallel non-rigid registration algorithm of medical images. , 2005, Methods of information in medicine.

[31]  Nicholas Ayache,et al.  3D anatomical variability assessment of the scoliotic spine using statistics on Lie groups , 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

[32]  L. Santaló Integral geometry and geometric probability , 1976 .

[33]  Luc Soler,et al.  A Complete Augmented Reality Guidance System for Liver Punctures: First Clinical Evaluation , 2005, MICCAI.

[34]  D. Mumford,et al.  Riemannian Geometries on Spaces of Plane Curves , 2003, math/0312384.

[35]  Michael I. Miller,et al.  Group Actions, Homeomorphisms, and Matching: A General Framework , 2004, International Journal of Computer Vision.

[36]  Peter E. Jupp,et al.  A Unified View of the Theory of Directional Statistics, 1975-1988 , 1989 .

[37]  Hervé Delingette,et al.  Towards a Statistical Atlas of Cardiac Fiber Structure , 2006, MICCAI.

[38]  Rachid Deriche,et al.  Variational, geometric, and statistical methods for modeling brain anatomy and function , 2004, NeuroImage.

[39]  Luc Soler,et al.  An Augmented Reality & Virtuality Interface for a Puncture Guidance System: Design and Validation on an Abdominal Phantom , 2004, MIAR.

[40]  J. Thirion,et al.  Automatic detection of hippocampal atrophy on magnetic resonance images. , 1999, Magnetic resonance imaging.

[41]  Johan Montagnat,et al.  Probabilistic and dynamic optimization of job partitioning on a grid infrastructure , 2006, 14th Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP'06).

[42]  Xavier Pennec,et al.  A Riemannian Framework for Tensor Computing , 2005, International Journal of Computer Vision.

[43]  P. Fillard,et al.  Dispositif perfectionné de traitement ou de production d'images de tenseurs , 2006 .

[44]  Richard McClatchey,et al.  Health-e-Child: An Integrated Biomedical Platform for Grid-Based Pediatrics , 2005 .

[45]  Guido Gerig,et al.  Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis. , 2006, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention.

[46]  Paul M. Thompson,et al.  Extrapolation of Sparse Tensor Fields: Application to the Modeling of Brain Variability , 2005, IPMI.

[47]  Simon R. Arridge,et al.  Diffusion tensor magnetic resonance image regularization , 2004, Medical Image Anal..

[48]  Xavier Pennec,et al.  Feature-Based Registration of Medical Images: Estimation and Validation of the Pose Accuracy , 1998, MICCAI.

[49]  K. Mardia Directional statistics and shape analysis , 1999 .

[50]  Nicholas Ayache,et al.  Uniform Distribution, Distance and Expectation Problems for Geometric Features Processing , 1998, Journal of Mathematical Imaging and Vision.

[51]  Michael I. Miller,et al.  Landmark matching via large deformation diffeomorphisms , 2000, IEEE Trans. Image Process..

[52]  Xavier Pennec,et al.  Multi-scale EM-ICP: A Fast and Robust Approach for Surface Registration , 2002, ECCV.

[53]  E. Tronci,et al.  1996 , 1997, Affair of the Heart.

[54]  Maher Moakher,et al.  Means and Averaging in the Group of Rotations , 2002, SIAM J. Matrix Anal. Appl..

[55]  N. Ayache,et al.  AN INTERACTIVE INTENSITY-AND FEATURE-BASED NON-RIGID REGISTRATION FRAMEWORK FOR 3 D MEDICAL IMAGES , 2005 .

[56]  Bo Markussen A Statistical Approach to Large Deformation Diffeomorphisms , 2004, 2004 Conference on Computer Vision and Pattern Recognition Workshop.

[57]  R. Bhattacharya,et al.  Large sample theory of intrinsic and extrinsic sample means on manifolds--II , 2005, math/0507423.

[58]  Nicholas Ayache,et al.  The Correlation Ratio as a New Similarity Measure for Multimodal Image Registration , 1998, MICCAI.

[59]  M. Unser,et al.  Interpolation Revisited , 2000, IEEE Trans. Medical Imaging.

[60]  裴继红,et al.  Image registration by maximization of mutual information based on edge width matching using particle swarm optimization , 2005 .

[61]  Nicholas Ayache,et al.  A Riemannian Framework for the Processing of Tensor-Valued Images , 2005, DSSCV.

[62]  Nicholas Ayache,et al.  Improved Detection Sensitivity in Functional MRI Data Using a Brain Parcelling Technique , 2002, MICCAI.

[63]  Alain Trouvé,et al.  Geodesic Shooting for Computational Anatomy , 2006, Journal of Mathematical Imaging and Vision.

[64]  Michael I. Miller,et al.  Volumetric transformation of brain anatomy , 1997, IEEE Transactions on Medical Imaging.

[65]  N. Ayache,et al.  Assessment of brace local action on vertebrae relative poses. , 2006, Studies in health technology and informatics.

[66]  Sébastien Granger,et al.  Une approche statistique multi-échelle au recalage rigide de surfaces : Application à l'implantologie dentaire , 2003 .

[67]  Xavier Pennec,et al.  Registration of Uncertain Geometric Features: Estimating the Pose and its Accuracy , 1997 .

[68]  Thomas Brox,et al.  Nonlinear structure tensors , 2006, Image Vis. Comput..

[69]  J. M. Oller On an intrinsic analysis of statistical estimation , 1993 .

[70]  Marc Arnaudon Barycentres convexes et approximations des martingales continues dans les variétés , 1995 .

[71]  Xavier Pennec,et al.  A Framework for Uncertainty and Validation of 3-D Registration Methods Based on Points and Frames , 2004, International Journal of Computer Vision.

[72]  J. Gallier,et al.  COMPUTING EXPONENTIALS OF SKEW-SYMMETRIC MATRICES AND LOGARITHMS OF ORTHOGONAL MATRICES , 2002 .

[73]  X. Pennec Toward a generic framework for recognition based on uncertain geometric features , 1998 .

[74]  R. Bhatia On the exponential metric increasing property , 2003 .

[75]  I. Holopainen Riemannian Geometry , 1927, Nature.

[76]  D. Kendall,et al.  The Riemannian Structure of Euclidean Shape Spaces: A Novel Environment for Statistics , 1993 .

[77]  E. Duchesnay,et al.  A framework to study the cortical folding patterns , 2004, NeuroImage.

[78]  Nicholas Ayache,et al.  Iconic feature based nonrigid registration: the PASHA algorithm , 2003, Comput. Vis. Image Underst..

[79]  Xavier Pennec Recaler pour mieux soigner , 2005 .

[80]  Hervé Delingette,et al.  Automatic Detection and Segmentation of Evolving Processes in 3D Medical Images: Application to Multiple Sclerosis , 1999, IPMI.

[81]  A. Toga,et al.  Mapping brain asymmetry , 2003, Nature Reviews Neuroscience.

[82]  Xavier Pennec,et al.  A Framework for Uncertainty and Validation of 3-D Registration Methods Based on Points and Frames , 1995, Proceedings of IEEE International Conference on Computer Vision.

[83]  Johan Montagnat,et al.  An experimental comparison of Grid5000 clusters and the EGEE grid , 2006 .

[84]  Christos Davatzikos,et al.  Hierarchical Matching of Cortical Features for Deformable Brain Image Registration , 1999, IPMI.

[85]  Claus Gramkow,et al.  On Averaging Rotations , 2004, Journal of Mathematical Imaging and Vision.

[86]  X. Pennec Computing the Mean of Geometric Features Application to the Mean Rotation , 1998 .

[87]  Xavier Pennec,et al.  A new approach for dental implant aided surgery. A pilot evaluation , 2000 .

[88]  Mi-Suen Lee,et al.  A Computational Framework for Segmentation and Grouping , 2000 .

[89]  N. Ayache,et al.  Landmark-based registration using features identified through differential geometry , 2000 .

[90]  Luc Soler,et al.  An Accuracy Certified Augmented Reality System for Therapy Guidance , 2004, ECCV.

[91]  Miroslav Lovric,et al.  Multivariate Normal Distributions Parametrized as a Riemannian Symmetric Space , 2000 .

[92]  L. Younes,et al.  Statistics on diffeomorphisms via tangent space representations , 2004, NeuroImage.

[93]  X. Pennec,et al.  MOTEUR: a data-intensive service-based workflow manager , 2006 .

[94]  Laurent Younes,et al.  Computable Elastic Distances Between Shapes , 1998, SIAM J. Appl. Math..

[95]  Anuj Srivastava,et al.  Analysis of planar shapes using geodesic paths on shape spaces , 2004, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[96]  D. Louis Collins,et al.  Automated extraction and variability analysis of sulcal neuroanatomy , 1999, IEEE Transactions on Medical Imaging.

[97]  Nicholas Ayache,et al.  Principal Spine Shape Deformation Modes Using Riemannian Geometry and Articulated Models , 2006, AMDO.

[98]  Rachid Deriche,et al.  Statistics on the Manifold of Multivariate Normal Distributions: Theory and Application to Diffusion Tensor MRI Processing , 2006, Journal of Mathematical Imaging and Vision.

[99]  Carl-Fredrik Westin,et al.  Processing and visualization for diffusion tensor MRI , 2002, Medical Image Anal..

[100]  N. Ayache,et al.  A novel framework for the 3D analysis of spine deformation modes. , 2006, Studies in health technology and informatics.

[101]  Nicholas Ayache,et al.  Geometric Means in a Novel Vector Space Structure on Symmetric Positive-Definite Matrices , 2007, SIAM J. Matrix Anal. Appl..

[102]  Johan Montagnat,et al.  Bridging clinical information systems and grid middleware: a Medical Data Manager , 2006, HealthGrid.

[103]  Xavier Pennec,et al.  Quelques problèmes posés par la gestion des primitives géométriques en vision par ordinateur , 1996 .

[104]  W. Kendall Probability, Convexity, and Harmonic Maps with Small Image I: Uniqueness and Fine Existence , 1990 .

[105]  Nicholas Ayache,et al.  Generalized Image Models and Their Application as Statistical Models of Images , 2003, MICCAI.

[106]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.

[107]  D. Louis Collins,et al.  Automatic 3‐D model‐based neuroanatomical segmentation , 1995 .

[108]  N. Ayache,et al.  Log‐Euclidean metrics for fast and simple calculus on diffusion tensors , 2006, Magnetic resonance in medicine.

[109]  Nicholas Ayache,et al.  Grid powered nonlinear image registration with locally adaptive regularization , 2004, Medical Image Anal..

[110]  W. Kendall Convexity and the Hemisphere , 1991 .

[111]  Benoit M. Dawant,et al.  Comparison and evaluation of retrospective intermodality image registration techniques , 1996, Medical Imaging.

[112]  Sebastien Ourselin,et al.  Automatic Alignment of Histological Sections , 1998 .

[113]  Joachim Weickert E � cient and Reliable Schemes for Nonlinear Di usion Filtering , 2005 .

[114]  D. Louis Collins,et al.  Retrospective evaluation of intersubject brain registration , 2003, IEEE Transactions on Medical Imaging.

[115]  Nicholas Ayache,et al.  Rigid registration of 3-D ultrasound with MR images: a new approach combining intensity and gradient information , 2001, IEEE Transactions on Medical Imaging.

[116]  V. Breton,et al.  Grid-enabling medical image analysis , 2005, CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid, 2005..

[117]  Nicholas Ayache,et al.  Smoothing and matching of 3-d space curves , 2005, International Journal of Computer Vision.

[118]  Jan Sijbers,et al.  Maximum-likelihood estimation of Rician distribution parameters , 1998, IEEE Transactions on Medical Imaging.

[119]  Xavier Pennec L'incertitude dans les problèmes de reconnaissance et de recalage - Applications en imagerie médicale et biologie moléculaire , 1996 .

[120]  Ron Kikinis,et al.  3D Image Matching Using a Finite Element Based Elastic Deformation Model , 1999, MICCAI.

[121]  W. Förstner,et al.  A Metric for Covariance Matrices , 2003 .

[122]  E. Hairer,et al.  Geometric Numerical Integration: Structure Preserving Algorithms for Ordinary Differential Equations , 2004 .

[123]  Irène Buvat,et al.  A Methodology to Validate MRI/SPECT Registration Methods Using Realistic Simulated SPECT Data , 2001, MICCAI.

[124]  Xavier Pennec,et al.  Correctness and robustness of 3D rigid matching with bounded sensor error , 1993 .

[125]  Luc Soler,et al.  Validation of a New 3D/2D Registration Criterion including Error Prediction. Application to Image Guided Radio-Frequency Ablation of the Liver Tumors , 2003 .

[126]  D. Louis Collins,et al.  Object-based morphometry of the cerebral cortex , 2004, IEEE Transactions on Medical Imaging.

[127]  Guillermo Sapiro,et al.  A geometric method for automatic extraction of sulcal fundi , 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

[128]  Agatha D. Lee,et al.  Abnormal Cortical Complexity and Thickness Profiles Mapped in Williams Syndrome , 2005, The Journal of Neuroscience.

[129]  Stephen D. Howard,et al.  SENSOR MANAGEMENT FOR RADAR: A TUTORIAL , 2006 .

[130]  Xavier Pennec,et al.  Multiple Registration and Mean Rigid Shape - Application to the 3D case , 1996 .

[131]  M. Fréchet Les éléments aléatoires de nature quelconque dans un espace distancié , 1948 .

[132]  Xavier Pennec,et al.  Intrinsic Statistics on Riemannian Manifolds: Basic Tools for Geometric Measurements , 2006, Journal of Mathematical Imaging and Vision.

[133]  Nicholas Ayache,et al.  A multisubject anatomo-functional parcellation of the brain , 2003 .

[134]  Rachid Deriche,et al.  Regularizing Flows for Constrained Matrix-Valued Images , 2004, Journal of Mathematical Imaging and Vision.

[135]  A. Toga,et al.  A SURFACE-BASED TECHNIQUE FOR WARPING 3-DIMENSIONAL IMAGES OF THE BRAIN , 2000 .

[136]  K. Mardia,et al.  Theoretical and Distributional Aspects of Shape Analysis , 1991 .

[137]  P. Thomas Fletcher,et al.  Gaussian Distributions on Lie Groups and Their Application to Statistical Shape Analysis , 2003, IPMI.

[138]  Nicholas Ayache,et al.  Clinical DT-MRI estimation, smoothing and fiber tracking with Log-Euclidean metrics , 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

[139]  Jay B. West,et al.  Predicting error in rigid-body point-based registration , 1998, IEEE Transactions on Medical Imaging.

[140]  Gary E. Christensen,et al.  Consistent image registration , 2001, IEEE Transactions on Medical Imaging.

[141]  Michael I. Miller,et al.  Hilbert-Schmidt Lower Bounds for Estimators on Matrix Lie Groups for ATR , 1998, IEEE Trans. Pattern Anal. Mach. Intell..

[142]  Hervé Delingette,et al.  Biomechanical Model Construction from Different Modalities: Application to Cardiac Images , 2002, MICCAI.

[143]  D. Tschumperlé PDE's based regularization of multivalued images and applications , 2002 .

[144]  Nicholas Ayache,et al.  Parallel non-rigid registration on a cluster of workstations , 2002 .

[145]  J. Régis,et al.  Generic model for the localization of the cerebral cortex and preoperative multimodal integration in epilepsy surgery. , 1995, Stereotactic and functional neurosurgery.

[146]  Paul M. Thompson,et al.  Measuring brain variability by extrapolating sparse tensor fields measured on sulcal lines , 2007, NeuroImage.

[147]  Ivan Bricault,et al.  Registration of real and CT-derived virtual bronchoscopic images to assist transbronchial biopsy , 1998, IEEE Transactions on Medical Imaging.

[148]  Sebastien Ourselin,et al.  Automatic alignement of histological sections for 3D reconstruction and analysis , 1998 .

[149]  Robert B. Fisher,et al.  Estimating 3-D rigid body transformations: a comparison of four major algorithms , 1997, Machine Vision and Applications.

[150]  X. Pennec,et al.  3D non-rigid registration by gradient descent on a Gaussian-windowed similarity measure using convolutions , 2000, Proceedings IEEE Workshop on Mathematical Methods in Biomedical Image Analysis. MMBIA-2000 (Cat. No.PR00737).

[151]  Alain Trouvé,et al.  Computing Large Deformation Metric Mappings via Geodesic Flows of Diffeomorphisms , 2005, International Journal of Computer Vision.

[152]  Hervé Delingette,et al.  An electromechanical model of the heart for image analysis and simulation , 2006, IEEE Transactions on Medical Imaging.

[153]  H. Hendriks A Crame´r-Rao–type lower bound for estimators with values in a manifold , 1991 .

[154]  Nicholas Ayache,et al.  Randomness and geometric features in computer vision , 1996, Proceedings CVPR IEEE Computer Society Conference on Computer Vision and Pattern Recognition.

[155]  N. Ayache,et al.  Bi-invariant Means in Lie Groups. Application to Left-invariant Polyaffine Transformations , 2006 .

[156]  R. Stefanescu,et al.  Parallel nonlinear registration of medical images with a priori information on anatomy and pathology , 2005 .

[157]  Nicholas Ayache,et al.  Riemannian Elasticity: A Statistical Regularization Framework for Non-linear Registration , 2005, MICCAI.

[158]  N. Ayache,et al.  Augmented Reality guided radio-frequency tumor ablation , 2003 .

[159]  David Cohen-Steiner,et al.  Restricted delaunay triangulations and normal cycle , 2003, SCG '03.

[160]  Jean-Francois Mangin,et al.  Multisubject Non-rigid Registration of Brain MRI Using Intensity and Geometric Features , 2001, MICCAI.

[161]  X. Pennec Left-Invariant Riemannian Elasticity: a distance on shape diffeomorphisms ? , 2006 .

[162]  Nicholas Ayache,et al.  Grid Enabled Non-rigid Registration with a Dense Transformation and a priori Information , 2003, MICCAI.

[163]  Hervé Delingette,et al.  Towards a Statistical Atlas of Cardiac Fiber Architecture , 2006 .

[164]  Gerald Q. Maguire,et al.  Comparison and evaluation of retrospective intermodality brain image registration techniques. , 1997, Journal of computer assisted tomography.

[165]  N. Ayache,et al.  Fast Non Rigid Matching by Gradient Descent: Study and Improvements of the "Demons" Algorithm , 1999 .

[166]  N. Ayache,et al.  Joint Estimation and Smoothing of Clinical DT-MRI with a Log-Euclidean Metric , 2005 .

[167]  Guillaume Flandin,et al.  Utilisation d'informations géométriques pour l'analyse statistique des données d'IRM fonctionnelle. (ntroduction of geometrical features for the statistical analysis of functional MRI data) , 2004 .

[168]  J. Picard Barycentres et martingales sur une variété , 1994 .

[169]  Morten Bro-Nielsen,et al.  Fast Fluid Registration of Medical Images , 1996, VBC.

[170]  Nicholas Ayache,et al.  Non-linear 2D and 3D Registration Using Block-Matching and B-Splines , 2005, Bildverarbeitung für die Medizin.

[171]  Nicholas Ayache,et al.  Polyrigid and polyaffine transformations: A novel geometrical tool to deal with non-rigid deformations - Application to the registration of histological slices , 2005, Medical Image Anal..

[172]  Johan Montagnat,et al.  Performance Evaluation of Grid-Enabled Registration Algorithms Using Bronze-Standards , 2006, MICCAI.

[173]  Xavier Pennec,et al.  Proceedings of the Second International Workshop on Mathematical Foundations of Computational Anatomy (MFCA'08) - Geometrical and Statistical Methods for Modelling Biological Shape Variability , 2006 .

[174]  Paul Rougée,et al.  Mécanique des grandes transformations , 1997 .

[175]  Anders Brun,et al.  Manifold learning and representations for image analysis and visualization , 2006 .

[176]  David J. Hawkes,et al.  Overview of an ultrasound to CT or MR registration system for use in thermal ablation of liver metastases , 2001 .

[177]  Luc Soler,et al.  An Augmented Reality System to Guide Liver Punctures , 2003 .

[178]  Ramin Shahidi,et al.  Validation of medical image processing in image-guided therapy , 2002, IEEE Transactions on Medical Imaging.

[179]  Sébastien Ourselin,et al.  Robust Registration of Multi-modal Images: Towards Real-Time Clinical Applications , 2002, MICCAI.

[180]  Johan Montagnat,et al.  Intraoperable Medical Image Registration Grid Service , 2004 .

[181]  Nicholas Ayache,et al.  A geometric algorithm to find small but highly similar 3D substructures in proteins , 1998, Bioinform..

[182]  R. Deriche Recursively Implementing the Gaussian and its Derivatives , 1993 .

[183]  Nicholas Ayache,et al.  A new representation of fMRI data using anatomo-functional constraints , 2001 .

[184]  Daniel Rueckert,et al.  Nonrigid registration using free-form deformations: application to breast MR images , 1999, IEEE Transactions on Medical Imaging.

[185]  Zhizhou Wang,et al.  A constrained variational principle for direct estimation and smoothing of the diffusion tensor field from complex DWI , 2004, IEEE Transactions on Medical Imaging.

[186]  Nicholas Ayache,et al.  Fast and Simple Calculus on Tensors in the Log-Euclidean Framework , 2005, MICCAI.

[187]  Hervé Delingette,et al.  Computational Models for Image-Guided Robot-Assisted and Simulated Medical Interventions , 2006, Proceedings of the IEEE.

[188]  Benoit M. Dawant,et al.  Brain Atlas Deformation in the Presence of Large Space-occupying Tumors , 1999, MICCAI.

[189]  Ruzena Bajcsy,et al.  Multiresolution elastic matching , 1989, Comput. Vis. Graph. Image Process..

[190]  Paul M. Thompson,et al.  Multivariate Statistics of the Jacobian Matrices in Tensor Based Morphometry and Their Application to HIV/AIDS , 2006, MICCAI.

[191]  S. Granger,et al.  Statistiques exactes et approchées sur les normales aléatoires , 2002 .

[192]  Johan Montagnat,et al.  Medical image registration algorithms assesment: Bronze Standard application enactment on grids using the MOTEUR workflow engine , 2006, HealthGrid.

[193]  T. Brox,et al.  Diffusion and regularization of vector- and matrix-valued images , 2002 .

[194]  Nicholas Ayache,et al.  Grid-Enabled Non-Rigid Registration Of Medical Images , 2004, Parallel Process. Lett..

[195]  Gabriele Lohmann,et al.  Investigating Cortical Variability Using a Generic Gyral Model , 2006, MICCAI.

[196]  Nicholas Ayache,et al.  An interactive hybrid non-rigid registration framework for 3D medical images , 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

[197]  Hervé Delingette,et al.  Deformable biomechanical models: Application to 4D cardiac image analysis , 2003, Medical Image Anal..

[198]  L. Soler,et al.  Traitement d'images medicales pour la planification, la simulation et l'aide intra-operatoire des actes chirurgicaux , 2004 .

[199]  Gjlles Aubert,et al.  Mathematical problems in image processing , 2001 .

[200]  P. Thomas Fletcher,et al.  Principal Geodesic Analysis on Symmetric Spaces: Statistics of Diffusion Tensors , 2004, ECCV Workshops CVAMIA and MMBIA.

[201]  R. Woods,et al.  Cortical change in Alzheimer's disease detected with a disease-specific population-based brain atlas. , 2001, Cerebral cortex.

[202]  Nicholas Ayache,et al.  Understanding the "Demon's Algorithm": 3D Non-rigid Registration by Gradient Descent , 1999, MICCAI.

[203]  Roger P. Woods,et al.  Characterizing volume and surface deformations in an atlas framework: theory, applications, and implementation , 2003, NeuroImage.

[204]  Luc Soler,et al.  Virtual reality and augmented reality in digestive surgery , 2004, Third IEEE and ACM International Symposium on Mixed and Augmented Reality.

[205]  Christopher Bingham An Antipodally Symmetric Distribution on the Sphere , 1974 .

[206]  Nicholas Ayache,et al.  Incorporating Statistical Measures of Anatomical Variability in Atlas-to-Subject Registration for Conformal Brain Radiotherapy , 2005, MICCAI.

[207]  H Benoit-Cattin,et al.  The SIMRI project: a versatile and interactive MRI simulator. , 2005, Journal of magnetic resonance.

[208]  Nicholas Ayache,et al.  An 0(n2) algorithm for 3D substructure matching of proteins , 1994 .

[209]  Neil Roberts,et al.  Automatic Analysis of Normal Brain Dissymmetry of Males and Females in MR Images , 1998, MICCAI.

[210]  Pierre Hellier,et al.  Coupling dense and landmark-based approaches for nonrigid registration , 2003, IEEE Transactions on Medical Imaging.

[211]  L. Younes,et al.  On the metrics and euler-lagrange equations of computational anatomy. , 2002, Annual review of biomedical engineering.

[212]  Xavier Pennec,et al.  Probabilities and statistics on Riemannian manifolds: Basic tools for geometric measurements , 1999, NSIP.

[213]  Nicholas Ayache,et al.  Non-rigid Atlas to Subject Registration with Pathologies for Conformal Brain Radiotherapy , 2004, MICCAI.

[214]  N. Ayache,et al.  Fast and Simple Computations on Tensors with Log-Euclidean Metrics. , 2005 .

[215]  K. Nomizu Invariant Affine Connections on Homogeneous Spaces , 1954 .

[216]  Nicholas Ayache,et al.  Vision augmentée de structures anatomiques abdominales recalées par stéréoscopie , 2003 .

[217]  Nicholas Ayache,et al.  Robust mosaicing with correction of motion distortions and tissue deformations for in vivo fibered microscopy , 2006, Medical Image Anal..

[218]  Joan Alexis Glaunès,et al.  Surface Matching via Currents , 2005, IPMI.

[219]  D'arcy W. Thompson,et al.  On Growth and Form , 1917, Nature.

[220]  Luc Soler,et al.  Evaluation of a New 3D/2D Registration Criterion for Liver Radio-Frequencies Guided by Augmented Reality , 2003, IS4TH.

[221]  John H. Gilmore,et al.  Quantitative Analysis of White Matter Fiber Properties along Geodesic Paths , 2003, MICCAI.

[222]  Nicholas Ayache,et al.  Fusing 3-D ultrasound and MRI for real-time image-guided neurosurgery , 2001 .

[223]  E. Meijering A chronology of interpolation: from ancient astronomy to modern signal and image processing , 2002, Proc. IEEE.

[224]  Daniel P Barboriak,et al.  Diffusion-weighted and perfusion MR imaging for brain tumor characterization and assessment of treatment response. , 2006, Radiology.

[225]  Hervé Delingette,et al.  Virtual Reality, Augmented Reality and Robotics in surgical procedures of the liver , 2004 .

[226]  M. Émery,et al.  Sur le barycentre d'une probabilité dans une variété , 1991 .

[227]  Nicholas Ayache,et al.  Geometric Variability of the Scoliotic Spine Using Statistics on Articulated Shape Models , 2008, IEEE Transactions on Medical Imaging.

[228]  X. Pennec Probabilities and Statistics on Riemannian Manifolds : A Geometric approach , 2004 .

[229]  Carl-Fredrik Westin,et al.  Fast Manifold Learning Based on Riemannian Normal Coordinates , 2005, SCIA.

[230]  Niels Holm Olsen,et al.  Linear Transformation Groups and Shape Space , 2004, Journal of Mathematical Imaging and Vision.

[231]  U. Grenander,et al.  Computational anatomy: an emerging discipline , 1998 .

[232]  Johan Montagnat,et al.  An optimized workflow enactor for data-intensive grid applications , 2005 .

[233]  Peter J. Rousseeuw,et al.  Robust Regression and Outlier Detection , 2005, Wiley Series in Probability and Statistics.

[234]  Sébastien Ourselin,et al.  Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images , 2000, MICCAI.

[235]  Alain Pitiot,et al.  Learning Object Correspondences with the Observed Transport Shape Measure , 2003, IPMI.

[236]  Nicholas Ayache,et al.  Tracking brain deformations in time sequences of 3D US images , 2003, Pattern Recognit. Lett..

[237]  Xavier Pennec,et al.  Rigid Point-Surface Registration Using an EM Variant of ICP for Computer Guided Oral Implantology , 2001, MICCAI.

[238]  Olivier D. Faugeras,et al.  Variational Methods for Multimodal Image Matching , 2002, International Journal of Computer Vision.

[239]  X. Pennec,et al.  Rigid Point-Surface Registration using Oriented Points and an EM Variant of ICP for Computer Guided , 2001 .

[240]  Simon R. Arridge,et al.  Non-linear Registration with the Variable Viscosity Fluid Algorithm , 1999, IPMI.

[241]  Nicholas Ayache,et al.  Medical image registration using geometric hashing , 1997 .

[242]  L. Miles,et al.  2000 , 2000, RDH.

[243]  Jitendra Malik,et al.  Scale-Space and Edge Detection Using Anisotropic Diffusion , 1990, IEEE Trans. Pattern Anal. Mach. Intell..

[244]  Nicholas Ayache,et al.  Mosaicing of Confocal Microscopic In Vivo Soft Tissue Video Sequences , 2005, MICCAI.

[245]  Johan Montagnat,et al.  Efficient services composition for grid-enabled data-intensive applications , 2006, 2006 15th IEEE International Conference on High Performance Distributed Computing.

[246]  R. Bhattacharya,et al.  Nonparametic estimation of location and dispersion on Riemannian manifolds , 2002 .

[247]  H. Karcher Riemannian center of mass and mollifier smoothing , 1977 .

[248]  D. Kendall A Survey of the Statistical Theory of Shape , 1989 .

[249]  Jean-Francois Mangin,et al.  Automatic Recognition of Cortical Sulci Using a Congregation of Neural Networks , 2000, MICCAI.

[250]  Jean-Philippe Thirion,et al.  Image matching as a diffusion process: an analogy with Maxwell's demons , 1998, Medical Image Anal..

[251]  Nicholas Ayache,et al.  Parcellation of brain images with anatomical and functional constraints for fMRI data analysis , 2002, Proceedings IEEE International Symposium on Biomedical Imaging.

[252]  Sébastien Ourselin,et al.  Block Matching: A General Framework to Improve Robustness of Rigid Registration of Medical Images , 2000, MICCAI.