Gene Ontology Consortium: The Gene Ontology (GO) database and informatics resource

The Gene Ontology (GO) project (http://www. geneontology.org/) provides structured, controlled vocabularies and classifications that cover several domains of molecular and cellular biology and are freely available for community use in the annotation of genes, gene products and sequences. Many model organism databases and genome annotation groups use the GO and contribute their annotation sets to the GO resource. The GO database integrates the vocabularies and contributed annotations and provides full access to this information in several formats. Members of the GO Consortium continually work collectively, involving outside experts as needed, to expand and update the GO vocabularies. The GO Web resource also provides access to extensive documentation about the GO project and links to applications that use GO data for functional analyses.

B Marshall | Eurie L. Hong | Chandra L. Theesfeld | J M Cherry | E Camon | R Apweiler | K Dolinski | G M Rubin | J A Blake | M Dolan | D P Hill | A Ireland | P Gaudet | E Dimmer | J Lomax | M A Harris | V Wood | R Balakrishnan | M C Costanzo | S S Dwight | D G Fisk | E L Hong | R S Nash | R Kishore | J Clark | M Ashburner | R Foulger | K Eilbeck | S Lewis | C Mungall | J Richter | C Bult | H Drabkin | J T Eppig | L Ni | M Ringwald | K R Christie | S Engel | J E Hirschman | A Sethuraman | C L Theesfeld | D Botstein | B Feierbach | T Berardini | S Mundodi | S Y Rhee | D Barrell | V Lee | R Chisholm | W Kibbe | E M Schwarz | P Sternberg | M Gwinn | L Hannick | J Wortman | M Berriman | N de la Cruz | P Tonellato | P Jaiswal | T Seigfried | R White | Jennifer I. Clark | C. Bult | M. Ashburner | J. Blake | D. Botstein | J. Cherry | K. Dolinski | S. Dwight | J. Eppig | M. Harris | D. Hill | S. Lewis | M. Ringwald | G. Rubin | D. Barrell | C. Mungall | H. Drabkin | R. Balakrishnan | S. Rhee | P. Sternberg | M. Dolan | E. Camon | R. Apweiler | R. Kishore | E. Dimmer | W. Kibbe | K. Eilbeck | K. R. Christie | D. Fisk | A. Sethuraman | V. Wood | M. Berriman | J. Hirschman | A. Ireland | J. Lomax | P. Tonellato | L. Hannick | J. Wortman | V. Lee | R. Chisholm | J. Richter | M. Costanzo | R. Foulger | B. Marshall | T. Berardini | E. Schwarz | P. Jaiswal | S. Mundodi | L. Ni | S. Engel | R. Nash | P. Gaudet | C. Theesfeld | E. Hong | B. Feierbach | M. Gwinn | T. Seigfried | W. Kibbe | E. Hong | R. White | Lee | R. L. Chisholm | J. Clark | N. De La Cruz | Wood | K. Christie | Kara Dolinski | Selina S. Dwight | David Botstein | Janan T. Eppig | Matthew Berriman | Pascale Gaudet | Rex L. Chisholm | Midori A. Harris | Jennifer I. Clark | Amelia Ireland | Jane Lomax | Michael Ashburner | R. Foulger | Karen Eilbeck | B. Marshall | Christopher J. Mungall | Gerald M. Rubin | Carol J. Bult | Hill Dp | Rama Balakrishnan | Karen R. Christie | Stacia R. Engel | Dianna G. Fisk | Jodi E. Hirschman | Robert S. Nash | Anand Sethuraman | Chandra L. Theesfeld | Becket Feierbach | Tanya Z. Berardini | S. Mundodi | S. Y. Rhee | Rolf Apweiler | Daniel Barrell | Warren A. Kibbe | Ranjana Kishore | Linda Hannick | N delaCruz | Peter J. Tonellato | T Seigfried | R. White | N. Delacruz | Hill Dp | T. Seigfried | S. Lewis

[1]  Midori A Harris,et al.  The Gene Ontology (GO) Project: Structured Vocabularies for Molecular Biology and Their Application to Genome and Expression Analysis , 2003, Current protocols in bioinformatics.

[2]  Ray Paton,et al.  Toward Principles for the Representation of Hierarchical Knowledge in Formal Ontologies , 1999, Data Knowl. Eng..

[3]  Stephen M. Mount,et al.  The genome sequence of Drosophila melanogaster. , 2000, Science.

[4]  Michael Ashburner,et al.  Assessment of genome-wide protein function classification for Drosophila melanogaster. , 2003, Genome research.

[5]  Steffen Schulze-Kremer,et al.  Ontologies for Molecular Biology , 2001, Electron. Trans. Artif. Intell..

[6]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[7]  E. Birney,et al.  Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs , 2002, Nature.

[8]  D. Barrell,et al.  The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. , 2003, Genome research.

[9]  Carole A. Goble,et al.  Ontology-based Knowledge Representation for Bioinformatics , 2000, Briefings Bioinform..

[10]  Avi Shoshan,et al.  Large-scale protein annotation through gene ontology. , 2002, Genome research.

[11]  J. Blake,et al.  Creating the Gene Ontology Resource : Design and Implementation The Gene Ontology Consortium 2 , 2001 .

[12]  W. Pearson,et al.  Current Protocols in Bioinformatics , 2002 .

[13]  Y. Pouliot,et al.  DIAN: a novel algorithm for genome ontological classification. , 2001, Genome research.