The Evidence of Clade 7.1 Avian Influenza Virus (H5N1) in Qinghai Lake

The highly pathogenic influenza A virus subtype H5N1 spread throughout Asia since 2003, reached to Europe in 2005, and the Middle East, as well as Africa and caused a global concern for a potential pandemic threat last decade. A Clade 2.3.2 H5N1 virus became dominate in the Qinghai Lake region in 2009 with sporadic mammal cases of infection and transferred to Russia and Europe through wild migratory birds. Currently, HPAI H5N1 of clades 2.3.4, 2.3.2, and 7 are the dominant co-circulating H5N1 viruses in poultry in Asia. 2.3.2 Clade is dominant in wild birds through the world whereas there is no evident data about Clade 7 circulation in wild birds. We detected HPAI H5N1 virus of Clade 7.1 in Qinghai Lake, that closely related to Shanxi-like and Vietnam viruses co-circulating in poultry. This is the first report of Clade 7.1 H5N1 in wild birds. Based on phylogenetic analyses, the virus can be originated from Clade 7.1 virus gene pool that spread in Vietnam and Chinese poultry and could spread with migratory birds to Qinghai Lake. The Qinghai Lake continues to be significant hotspot for H5N1 surveillance since the regular outbreaks occurred there in wild birds and mammals. Based on these facts and findings, the related researchers should pay more attention to the Qinghai Lake basin as significant hotspot for H5N1 avian influenza surveillance since the regular H5N1 outbreaks occurred there in wild birds with sporadic mammal cases of infection.

[1]  Ruben O. Donis,et al.  Revised and updated nomenclature for highly pathogenic avian influenza A (H5N1) viruses , 2014, Influenza and other respiratory viruses.

[2]  Y. Guan,et al.  Universal primer set for the full-length amplification of all influenza A viruses , 2001, Archives of Virology.

[3]  Hualan Chen,et al.  Continued Evolution of H5N1 Influenza Viruses in Wild Birds, Domestic Poultry, and Humans in China from 2004 to 2009 , 2010, Journal of Virology.

[4]  K. Sharshov,et al.  Avian Influenza (H5N1) Outbreak among Wild Birds, Russia, 2009 , 2010, Emerging infectious diseases.

[5]  Eun-Kyoung Lee,et al.  Novel Reassortant Influenza A ( H 5 N 8 ) Viruses among Inoculated Domestic and Wild Ducks , South Korea , 2014 , 2022 .

[6]  G. Gao,et al.  Clade 2.3.2 Avian Influenza Virus (H5N1), Qinghai Lake Region, China, 2009–2010 , 2011, Emerging infectious diseases.

[7]  T. Le,et al.  Evolutionary dynamics of highly pathogenic avian influenza A/H5N1 HA clades and vaccine implementation in Vietnam , 2014, Clinical and experimental vaccine research.

[8]  R. Webster,et al.  Continuing challenges in influenza , 2014, Annals of the New York Academy of Sciences.

[9]  C. Davis,et al.  Characterization of a highly pathogenic avian influenza H5N1 virus sublineage in poultry seized at ports of entry into Vietnam. , 2009, Virology.

[10]  Lanjuan Li,et al.  Characterization of the H5N1 Highly Pathogenic Avian Influenza Virus Derived from Wild Pikas in China , 2009, Journal of Virology.

[11]  Jian Wang,et al.  H5N1 avian influenza re-emergence of Lake Qinghai: phylogenetic and antigenic analyses of the newly isolated viruses and roles of migratory birds in virus circulation , 2008, The Journal of general virology.

[12]  O. Kurskaya,et al.  Genetic and biological characterization of avian influenza H5N1 viruses isolated from wild birds and poultry in Western Siberia , 2010, Archives of Virology.

[13]  Hyun-Jeong Lee,et al.  Novel Reassortant Influenza A(H5N8) Viruses, South Korea, 2014 , 2014, Emerging Infectious Diseases.

[14]  M. Nei,et al.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.

[15]  J. Veen An Atlas of Movements of Southwest Siberian Waterbirds , 2005 .

[16]  M. Simmons Independence of alignment and tree search. , 2004, Molecular phylogenetics and evolution.

[17]  Epidemiological situation and genetic analysis of H7N9 influenza viruses in Shanghai in 2013 , 2014, Archives of Virology.

[18]  Isolation and characterization of two H5N1 influenza viruses from swine in Jiangsu Province of China , 2013, Archives of Virology.

[19]  Y. Guan,et al.  Avian flu: H5N1 virus outbreak in migratory waterfowl , 2005, Nature.

[20]  G. Gao,et al.  Highly Pathogenic H5N1 Influenza Virus Infection in Migratory Birds , 2005, Science.

[21]  J. Thompson,et al.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. , 1997, Nucleic acids research.

[22]  J. Gu,et al.  Comparative Virus Replication and Host Innate Responses in Human Cells Infected with Three Prevalent Clades (2.3.4, 2.3.2, and 7) of Highly Pathogenic Avian Influenza H5N1 Viruses , 2013, Journal of Virology.