Quantum topological molecular similarity. Part 5. Further development with an application to the toxicity of polychlorinated dibenzo-p-dioxinsThe IUPAC name for dibenzo-p-dioxin is dibenzo[b,e][1,4]dioxin.(PCDDs)

A new method called quantum topological molecular similarity (QTMS), which was previously introduced, is further developed and applied. An excellent and statistically validated QSAR is obtained for the Hammett acidity constants of a set of 68 carboxylic acids including p- and m-benzoic acids, p-phenylacetic acid, 4-X-bicyclo[2.2.2]octane-1-carboxylic acids and poly-substituted benzoic acids. This investigation shows that the previously imposed condition for a minimal and restricted common molecular skeleton can be relaxed. The O–H and the C–O bonds are recovered as the active center as expected. The first time use of atomic properties instead of bond properties leads to valid QSARs. Finally QTMS is applied to predict three different activities (pEC50) of the ecologically relevant polychlorinated dibenzo-p-dioxins (PCDDs). We find that the active center is concentrated near the lateral C–Cl bonds.

[1]  C. Hansch,et al.  p-σ-π Analysis. A Method for the Correlation of Biological Activity and Chemical Structure , 1964 .

[2]  Ronald J. Gillespie,et al.  Chemical Bonding and Molecular Geometry: From Lewis to Electron Densities , 1972 .

[3]  T W Schultz,et al.  Comparison of the QSAR models for toxicity and biodegradability of anilines and phenols. , 1997, Chemosphere.

[4]  M. Lasagni,et al.  Toward a mechanistic understanding of PCDD biological activity based on molecular electrostatic potential modeling , 1994 .

[5]  S. Safe,et al.  Comparative toxicology and mechanism of action of polychlorinated dibenzo-p-dioxins and dibenzofurans. , 1986, Annual review of pharmacology and toxicology.

[6]  Paul L. A. Popelier,et al.  Quantum Molecular Similarity. 3. QTMS Descriptors , 2001, J. Chem. Inf. Comput. Sci..

[7]  Alexandru T. Balaban,et al.  From Chemical Topology to 3D Geometry , 1997, J. Chem. Inf. Comput. Sci..

[8]  S. Wold,et al.  Partial Least Squares Projections to Latent Structures (PLS) in Chemistry , 2002 .

[9]  I. Gutman,et al.  Topological indices and graph polynomials of some macrocyclic belt-shaped molecules , 1996 .

[10]  Paul L. A. Popelier,et al.  Molecular similarity and complementarity based on the theory of atoms in molecules , 1995 .

[11]  Milan Randic,et al.  On Interpretation of Well-Known Topological Indices , 2001, J. Chem. Inf. Comput. Sci..

[12]  Siân T. Howard,et al.  Benzenoid hydrocarbon aromaticity in terms of charge density descriptors , 1997 .

[13]  Paul L. A. Popelier,et al.  A ROBUST ALGORITHM TO LOCATE AUTOMATICALLY ALL TYPES OF CRITICAL-POINTS IN THE CHARGE-DENSITY AND ITS LAPLACIAN , 1994 .

[14]  G. Schaftenaar,et al.  Molden: a pre- and post-processing program for molecular and electronic structures* , 2000, J. Comput. Aided Mol. Des..

[15]  R. Bader Atoms in molecules , 1990 .

[16]  Paul L. A. Popelier,et al.  A method to integrate an atom in a molecule without explicit representation of the interatomic surface , 1998 .

[17]  Paul L. A. Popelier,et al.  Integration of atoms in molecules: a critical examination , 1996 .

[18]  C. Waller,et al.  Comparative molecular field analysis of polyhalogenated dibenzo-p-dioxins, dibenzofurans, and biphenyls. , 1992, Journal of medicinal chemistry.

[19]  Paul L. A. Popelier,et al.  Atoms in molecules , 2000 .

[20]  M. Randic Characterization of molecular branching , 1975 .

[21]  L. Hall,et al.  Molecular Structure Description: The Electrotopological State , 1999 .

[22]  Paul L. A. Popelier,et al.  Quantum molecular similarity. Part 2: The relation between properties in BCP space and bond length , 1999 .

[23]  Ramon Carbó-Dorca,et al.  Molecular basis of quantitative structure-properties relationships (QSPR): A quantum similarity approach , 1999, J. Comput. Aided Mol. Des..

[24]  Bjørn K. Alsberg,et al.  A new 3D molecular structure representation using quantum topology with application to structure–property relationships , 2000 .

[25]  Emili Besalú,et al.  Molecular Quantum Similarity Measures Tuned 3D QSAR: An Antitumoral Family Validation Study , 1998, J. Chem. Inf. Comput. Sci..

[26]  Paul L. A. Popelier,et al.  Quantum molecular similarity. 1. BCP space , 1999 .

[27]  Æleen Frisch,et al.  Exploring chemistry with electronic structure methods , 1996 .

[28]  L. Hall,et al.  Molecular connectivity in chemistry and drug research , 1976 .

[29]  S. Wold,et al.  PLS: Partial Least Squares Projections to Latent Structures , 1993 .

[30]  Emili Besalú,et al.  Quantum molecular similarity measures (QMSM) as a natural way leading towards a theoretical foundation of quantitative structure-properties relationships (QSPR) , 1995 .