Diffuse X-ray scattering to model protein motions.
暂无分享,去创建一个
Nicholas K Sauter | Paul D Adams | Michael E Wall | James S Fraser | M. Wall | P. Adams | J. Fraser | N. Sauter
[1] Jeremy C. Smith,et al. X-ray diffuse scattering and rigid-body motion in crystalline lysozyme probed by molecular dynamics simulation. , 1998, Journal of molecular biology.
[2] G. Phillips,et al. Diffuse x-ray scattering from tropomyosin crystals. , 1992, Biophysical journal.
[3] Axel T Brunger,et al. Exploring the structural dynamics of the E.coli chaperonin GroEL using translation-libration-screw crystallographic refinement of intermediate states. , 2004, Journal of molecular biology.
[4] B. Borie. X-Ray Diffraction in Crystals, Imperfect Crystals, and Amorphous Bodies. , 1965 .
[5] Nicholas K. Sauter,et al. Robust indexing for automatic data collection , 2004, Journal of applied crystallography.
[6] P. Moore,et al. On the relationship between diffraction patterns and motions in macromolecular crystals. , 2009, Structure.
[7] Randy J. Read,et al. Acta Crystallographica Section D Biological , 2003 .
[8] Loes M. J. Kroon-Batenburg,et al. EVAL15: a diffraction data integration method based on ab initio predicted profiles , 2010 .
[9] M. Wall,et al. High-resolution macromolecular structure determination using CCD detectors and synchrotron radiation. , 1995, Structure.
[10] Jeremy C. Smith,et al. Correlated dynamics determining x-ray diffuse scattering from a crystalline protein revealed by molecular dynamics simulation. , 2005, Physical review letters.
[11] S M Gruner,et al. Three-dimensional diffuse x-ray scattering from crystals of Staphylococcal nuclease. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[12] A. W. Pryor,et al. Thermal vibrations in crystallography , 1975 .
[13] Franci Merzel,et al. Lattice dynamics of a protein crystal. , 2007, Physical review letters.
[14] Mark A. Wilson,et al. Visualizing networks of mobility in proteins , 2013, Nature Methods.
[15] J. Amorós,et al. Molecular crystals : their transforms and diffuse scattering , 1968 .
[16] J. Clarage,et al. Liquid-like movements in crystalline insulin , 1988, Nature.
[17] Reginald W. James,et al. The Optical principles of the diffraction of X-rays , 1948 .
[18] T. Welberry,et al. Diffuse X-ray Scattering and Models of Disorder , 2004 .
[19] J B Clarage,et al. Analysis of diffuse scattering from yeast initiator tRNA crystals. , 1994, Acta crystallographica. Section D, Biological crystallography.
[20] Nicholas K. Sauter,et al. The Computational Crystallography Toolbox: crystallographic algorithms in a reusable software framework , 2002 .
[21] Michael E Wall,et al. Methods and software for diffuse X-ray scattering from protein crystals. , 2009, Methods in molecular biology.
[22] Vijay S. Pande,et al. Everything you wanted to know about Markov State Models but were afraid to ask. , 2010, Methods.
[23] André Guinier,et al. X-ray Crystallography. (Book Reviews: X-Ray Diffraction in Crystals, Imperfect Crystals, and Amorphous Bodies) , 1963 .
[24] D. Moss,et al. The Variety of X-ray Diffuse Scattering from Macromolecular Crystals and its Respective Components , 1991 .
[25] J. P. Grossman,et al. Biomolecular simulation: a computational microscope for molecular biology. , 2012, Annual review of biophysics.
[26] Nobuhiro Gō,et al. Collective motions in proteins investigated by X-ray diffuse scattering , 1993 .
[27] M E Wall,et al. Motions of calmodulin characterized using both Bragg and diffuse X-ray scattering. , 1997, Structure.
[28] Paul D Adams,et al. Modelling dynamics in protein crystal structures by ensemble refinement , 2012, eLife.
[29] J. Doucet,et al. Molecular dynamics studied by analysis of the X-ray diffuse scattering from lysozyme crystals , 1987, Nature.
[30] R M Sweet,et al. Correlations of atomic movements in lysozyme crystals , 1992, Proteins.
[31] Jeremy C. Smith,et al. Protein dynamics from X‐ray crystallography: Anisotropic, global motion in diffuse scattering patterns , 2006, Proteins.
[32] W. Wooster. Diffuse X-Ray Reflections from Crystals , 1962 .
[33] G. Phillips,et al. Motions of tropomyosin. Crystal as metaphor. , 1980, Biophysical journal.
[34] H. V. D. Bedem,et al. Automated identification of functional dynamic contact networks from X-ray crystallography , 2013 .
[35] Sol M. Gruner,et al. X-ray imaging detectors , 2012 .
[36] B M Pettitt,et al. A sampling problem in molecular dynamics simulations of macromolecules. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[37] Matthias Schroder,et al. Theory Of X Ray Diffraction In Crystals , 2016 .
[38] Henry van den Bedem,et al. Automated identification of functional dynamic networks from X-ray crystallography , 2013, Nature Methods.
[39] Jeremy C. Smith,et al. Correlated intramolecular motions and diffuse x–ray scattering in lysozyme , 1994, Nature Structural Biology.
[40] Jeremy C. Smith,et al. Fluctuations and correlations in crystalline protein dynamics: a simulation analysis of staphylococcal nuclease. , 2005, Biophysical journal.
[41] Michael W Deem,et al. Parallel tempering: theory, applications, and new perspectives. , 2005, Physical chemistry chemical physics : PCCP.
[42] W. Zachariasen,et al. Theory of X-Ray Diffraction in Crystals , 1968 .
[43] B. Warren,et al. X-Ray Diffraction , 2014 .
[44] George N Phillips,et al. Evaluating elastic network models of crystalline biological molecules with temperature factors, correlated motions, and diffuse x-ray scattering. , 2010, Biophysical journal.